Intraspecific variation in indirect plant-soil feedbacks influences a wetland plant invasion

The invasion threat of the emerging alien cactus Cylindropuntia pallida (Rosa), F.M. Knuth in South Africa and the potential for control using herbicides

The emerging alien cactus Cylindropuntia pallida (Rose) F.M. Knuth originates from northern Mexico and introduced into South Africa in 1940s as an ornamental plant.  Multiple populations of C. pallida have been detected in various areas of South Africa. C. pallida has effective propagule dispersal and rapid recruitment making it a likely key future invader, and thus, is a target for eradication in South Africa. To eradicate C. pallida populations, a foliar spray (i.e. using a 2% concentration of herbicide with fluroxypyr and triclopyr) has been applied to plants in nine populations, with population sizes ranging between 535 and 2701 plants and populations covering areas of 100 -1000 ha. The aims of the study were to investigate the efficacy of the foliar spray method used to eradicate C. pallida; to investigate the impacts of C. pallida invasions on native vegetation integrity; to apply species distribution models (SDMs) to identify suitable climates for C. pallida in South Africa; and to document the biomes vulnerable to the negative impact of C. pallida in South Africa. Results show that foliar spray killed many C. pallida plants (mean percentage of dead plants ± SE, 83.3 ± 6.4; n = 9; range, 70-96%), with adult plants taking about 2 months to die completely. The efficacy of the herbicide was not affected by plant size or the concentration of the herbicide used. The invaded site had significantly greater vegetation cover which persisted across winter compared to the uninvaded site, but the latter site's vegetation cover significantly dropped in winter. Also, the invaded site had lower plant species diversity than the uninvaded site and was dominated by species in the Poaceae and Asteraceae plant families. Additionally, a normalised difference vegetation index (NDVI) analysis shows that the uninvaded site has higher vegetation cover and health than the invaded site wherein a notable decline in vegetation health was observed between 2019 and 2022. A large area (> 15 million hectares) was predicted to be suitable for invasion by C. pallida in provinces with arid and warm temperate climates - the fynbos and grassland biomes are the most vulnerable. Because of the observed negative impacts, high environmental compatibility, and high cost of clearing large infestations, we advocate for considering the biocontrol method for effectively managing C. pallida invasion in South Africa.

The soil microbiome affects patterns of local adaptation in an alpine plant under moisture stress

PREMISE

The soil microbiome plays a role in plant trait expression and fitness, and plants may be locally adapted or maladapted to their soil microbiota. However, few studies of local adaptation in plants have incorporated a microbial treatment separate from manipulations of the abiotic environment, so our understanding of microbes in plant adaptation is limited.

METHODS

Here we tested microbial effects on local adaptation in four paired populations of an abundant alpine plant from two community types, dry and moist meadow. In a 5-month greenhouse experiment, we manipulated source population, soil moisture, and soil microbiome and measured plant survival and biomass to assess treatment effects.

RESULTS

Dry meadow populations had higher biomass than moist meadow populations at low moisture, demonstrating evidence of local adaptation to soil moisture in the absence of microbes. In the presence of microbes, dry meadow populations had greater survival than moist meadow populations when grown with dry meadow microbes regardless of moisture. Moist meadow populations showed no signs of adaptation or maladaptation.

CONCLUSIONS

Our research highlights the importance of microbial mutualists in local adaptation, particularly in dry environments with higher abiotic stress. Plant populations from environments with greater abiotic stress exhibit different patterns of adaptation when grown with soil microbes versus without, while plant populations from less abiotically stressful environments do not. Improving our understanding of the role microbes play in plant adaptation will require further studies incorporating microbial manipulations.

Plant-soil feedback and plant invasion: effect of soil conditioning on native and invasive Prosopis species using the plant functional trait approach

Introduction

Invasive species have been identified as a major threat to native biodiversity and ecosystem functioning worldwide due to their superiority in spread and growth. Such superiority is explained by the invasional meltdown phenomena, which suggests that invasive species facilitate the establishment of more invasive species rather than native species by modifying the plant-soil feedback (PSF).

Methods

We conducted a two-phase plant-soil feedback experiment using the native Prosopis cineraria and the invasive Prosopis juliflora in Oman. Firstly, we conditioned the soil by planting seedlings of native species, invasive species, native and invasive species "mixed", and unconditioned soil served as a control. Secondly, we tested the feedback of these four conditioned soil on the two species separately by measuring the productivity (total biomass) and the performance in the form of plant functional traits (plant height, specific leaf area (SLA), leaf nitrogen content (Nmass), leaf carbon content (Cmass) and specific root length (SRL) of native and invasive species as well as the nutrient availability in soil (soil organic carbon (SOC) and soil total nitrogen (STN)).

Results and discussion

We found that the native species produced more biomass, best performance, and higher SOC and STN when grown in soil conditioned by native species, additionally, it gave lower biomass, reduced performance, and lower SOC and STN when grown in the soil conditioned by invasive and mixed species. These results suggest negative PSF for native species and positive PSF for invasive species in the soil conditioned by invasive species, which can be considered as red flag concerning the restoration of P. cineraria as an important native species in Oman, as such positive PSF of the invasive species P. juliflora will inhibit the regeneration of P. cineraria.

Metabolomic Evenness Underlies Intraspecific Differences Among Lineages of a Wetland Grass

The metabolome represents an important functional trait likely important to plant invasion success, but we have a limited understanding of whether the entire metabolome or targeted groups of compounds confer an advantage to invasive as compared to native taxa. We conducted a lipidomic and metabolomic analysis of the cosmopolitan wetland grass Phragmites australis. We classified features into metabolic pathways, subclasses, and classes. Subsequently, we used Random Forests to identify informative features to differentiate five phylogeographic and ecologically distinct lineages: European native, North American invasive, North American native, Gulf, and Delta. We found that lineages had unique phytochemical fingerprints, although there was overlap between the North American invasive and North American native lineages. Furthermore, we found that divergence in phytochemical diversity was driven by compound evenness rather than metabolite richness. Interestingly, the North American invasive lineage had greater chemical evenness than the Delta and Gulf lineages but lower evenness than the North American native lineage. Our results suggest that metabolomic evenness may represent a critical functional trait within a plant species. Its role in invasion success, resistance to herbivory, and large-scale die-off events common to this and other plant species remain to be investigated.

Invasion patterns of Spartina alterniflora: Response of clones and seedlings to flooding and salinity-A case study in the Yellow River Delta, China

The invasion of Spartina alterniflora has caused severe damage to the coastal wetland ecosystem of the Yellow River Delta, China. Flooding and salinity are key factors influencing the growth and reproduction of S. alterniflora. However, the differences in response of S. alterniflora seedlings and clonal ramets to these factors remain unclear, and it is not known how these differences affect invasion patterns. In this paper, clonal ramets and seedlings were studied separately. Through literature data integration analysis, field investigation, greenhouse experiments, and situational simulation, we demonstrated significant differences in the responses of clonal ramets and seedlings to flooding and salinity changes. Clonal ramets have no theoretical inundation duration threshold with a salinity threshold of 57 ppt (part per thousand); Seedlings have an inundation duration threshold of about 11 h/day and a salinity threshold of 43 ppt. The sensitivity of belowground indicators of two propagules-types to flooding and salinity changes was stronger than that of aboveground indicators, and it is significant for clones (P < 0.05). Clonal ramets have a larger potentially invadable area than seedlings in the Yellow River Delta. However, the actual invasion area of S. alterniflora is often limited by the responses of seedlings to flooding and salinity. In a future sea-level rise scenario, the difference in responses to flooding and salinity will cause S. alterniflora to further compress native species habitats. Our research findings can improve the efficiency and accuracy of S. alterniflora control. Management of hydrological connectivity and strict restrictions on nitrogen input to wetlands, for example, are potential new initiatives to control S. alterniflora invasion.

Structure and impact of root-associated fungi in treatment wetland mesocosms

Root fungal endophytes have been shown to play a positive role in soil phytoremediation by immobilizing or degrading contaminants. In comparison, little is known about their ecological functions and possible role in improving plant performance in treatment wetlands. In a greenhouse study, we compared the structure of fungal communities associated with Phragmites australis roots in treatment wetland mesocosms fed with pre-treated wastewater to mesocosms fed with drinking water. We evaluated the role of water source as an environmental filter structuring fungal communities, and correlated the relative abundances of fungal taxa with key services delivered by the wetlands (i.e., biomass production and nutrient removal). Mesocosms fed with wastewater had higher fungal alpha-diversity. Contrary to expectations, many fungi were unique to drinking water-fed mesocosms, suggesting that the oligotrophic conditions prevailing in these mesocosms benefited specific fungal taxa. On the other hand, wastewater-fed mesocosms had a slightly higher proportion of sequence reads belonging to fungal species recognized as potential endophytes and phytopathogens, highlighting the potential role of wastewater as a source of plant-associated fungi. Interestingly, we found contrasted association patterns between fungal species' relative abundances and different treatment wetland services (e.g., N vs P removal), such that some fungi were positively associated with N removal but negatively associated with P removal. This suggests that fungal endophytes may be functionally complementary in their contribution to distinct mesocosm services, thus supporting arguments in favor of microbial diversity in phytotechnologies. Because of the wide alpha-diversity of fungal communities, and the fact that with current databases, most species remained unassigned to a specific function (or even guild), further investigation is needed to link fungal community structure and service delivery in treatment wetlands.

Saltwater intrusion indirectly intensifies Phragmites australis invasion via alteration of soil microbes

Although global change clearly influences species invasion, the exact mechanisms by which global change either intensifies or limits invasive spread remain elusive. Global change can affect invasion directly by altering abiotic conditions, as well as indirectly by altering the abundance and composition of interacting species. Here we examine the relative impacts of direct effects of saltwater intrusion and indirect effects via microbial interactions on the expansion of a model invasive plant species, Phragmites australis, in freshwater marshes of coastal Louisiana. Using a mesocosm experiment, we found that overall salinity strongly increases invasion, but the direction and magnitude of direct and indirect effects were context dependent. Indirect effects of salinity, via alterations in soil microbial composition, increased invasive performance when grown in monoculture and decreased native performance in native-only communities. However, when P. australis and natives were grown together, microbial indirect effects were not important; rather the salinity treatment increased P. australis invasion through reduction of native plant growth. Results suggest that salinity-induced alteration of soil microbes will increase susceptibility of native communities to invasion and promote P. australis monoculture expansion in later stages of invasion; whereas non-microbial effects of salinity are more important in early stages of invasion when P. australis is competing with native species. More broadly, these results underscore the importance of considering microbially-mediated indirect effects of global change in investigating the long-term outcomes of plant species interactions.

Plant effects on and response to soil microbes in native and non-native Phragmites australis

Plant-soil feedbacks (PSFs) mediate plant community dynamics and may plausibly facilitate plant invasions. Microbially mediated PSFs are defined by plant effects on soil microbes and subsequent changes in plant performance (responses), both positive and negative. For microbial interactions to benefit invasive plants disproportionately, native and invasive plants must either (1) have different effects on and responses to soil microbial communities or (2) only respond differently to similar microbial communities. In other words, invasive plants do not need to cultivate different microbial communities than natives if they respond differently to them. However, effects and responses are not often explored separately, making it difficult to determine the underlying causes of performance differences. We performed a reciprocal-transplant PSF experiment with multiple microbial inhibition treatments to determine how native and non-native lineages of Phragmites australis affect and respond to soil bacteria, fungi, and oomycetes. Non-native Phragmites is a large, fast-growing, cosmopolitan invasive plant, whereas the North American native variety is comparatively smaller, slower growing, and typically considered a desirable wetland plant. We identified the effects of each plant lineage on soil microbes using DNA meta-barcoding and linked plant responses to microbial communities. Both Phragmites lineages displayed equally weak, insignificant PSFs. We found evidence of slight differential effects on microbial community composition, but no significant differential plant responses. Soils conditioned by each lineage differed only slightly in bacterial community composition, but not in fungal composition. Additionally, native and non-native Phragmites lineages did not significantly differ in their response to similar soil microbial communities. Neither lineage appreciably differed when plant biomass was compared between those grown in sterile and live soils. Targeted microbial inhibitor treatments revealed both lineages were negatively impacted by soil bacteria, but the negative response was stronger in non-native Phragmites. These observations were opposite of expectations from invasion theory and imply that the success of non-native Phragmites, relative to the native lineage, does not result from its interaction with soil microorganisms. More broadly, quantifying plant effects on, and responses to soil microbes separately provides detailed and nuanced insight into plant-microbial interactions and their role in invasions, which could inform management outcomes for invasive plants.

Salt Marsh Plant Community Structure Influences Success of Avicennia germinans During Poleward Encroachment

Along the Florida coast, decreasing freeze events are promoting the range shift of the mangrove species Avicennia germinans northward into temperate salt marsh wetlands. Although plant species' ranges are tightly linked with their climatic tolerances, there is considerable variability in the magnitude by which biotic factors like competition and facilitation may also influence range shifts. Changes in mangrove and marsh plant abundance can alter both the above and belowground environment, which may in turn influence ecosystem services typically associated with these systems such as storm surge abatement and carbon storage. Therefore, it is key to understand (1) how the above and belowground environment of established salt marshes influences establishment of mangroves, and (2) how above and belowground environments shift in response to mangrove encroachment. Using a semi-natural mangrove planting experiment, we investigated the impact of four distinct marsh plant community structures (Batis maritima, Spartina alterniflora, mixture of B. maritima and S. alterniflora, mudflat) on mangrove survivorship and decomposition rate. In mixed marsh plots, mangrove survivorship was 42 % higher compared to survivorship in mudflat plots, and decomposition rate was 47 % greater in mixed marsh plots compared to mudflat. However, percent cover of vegetation differed across treatments, and was highest in mixed marsh plots. High survivorship in mixed marsh plots is likely due to increased protection from physical stressors by the dense aboveground cover, and belowground plant root-driven effects such as nutrient availability and oxygen delivery. Our findings suggest that above and below ground differences in salt marsh plant community structure can have an impact on the survival of encroaching mangroves, which may have implications for predicting future mangrove encroachment and improving mangrove restoration techniques.

Soil sample pooling generates no consistent inference bias: a meta-analysis of 71 plant-soil feedback experiments

There is current debate on how soil sample pooling affects the measurement of plant-soil feedbacks. Several studies have suggested that pooling soil samples among experimental units reduces variance and can bias estimates of plant-soil feedbacks. However, it is unclear whether pooling has resulted in systematic mismeasurement of plant-soil feedbacks in the literature. Using data from 71 experiments, we tested whether pairwise plant-soil feedback direction, magnitude and variance differed among soil pooling treatments. We also tested whether pooling has altered our understanding of abiotic and biotic drivers that influence pairwise plant-soil feedbacks. Pooling of soil samples among experimental units was used in 42% of examined experiments. Contrary to predictions, pooling did not affect mean pairwise plant-soil feedback effect size or within-experiment variance. Accounting for soil sample pooling also did not significantly alter our understanding of the drivers of pairwise plant-soil feedbacks. We conclude that there is no evidence that soil sample pooling systematically biases estimates of plant-soil feedback direction, magnitude, variance or drivers across many studies. Given the debate of whether to pool soil samples, researchers should be aware of potential criticisms and carefully consider how experimental design and soil pooling methods influence interpretation of experiments.

Latitudinal variation in the diversity and composition of various organisms associated with an exotic plant: the role of climate and plant invasion

Climate and plant invasion can shape biotic communities at large spatial scales. Yet, how diverse groups of organisms associated with an invasive plant change simultaneously with latitude and the roles of climate and plant invasion remains unclear. We conducted a field survey of plants (native vs exotic), soil fungi (pathogenic, saprotrophic, arbuscular mycorrhiza fungi (AMF) and ectomycorrhizal (EcM) fungi) and arthropods (herbivores, predators and detritivores) associated with the invasive plant Alternanthera philoxeroides at 49 sites spanning 14 latitudinal degrees in China. Results showed that diversity and composition of these functional groups changed differently with latitude, partially due to their specific responses to climate, invasion of A. philoxeroides and other biotic environments. Moreover, A. philoxeroides invasion and/or composition of other plants, rather than climate, predicted the diversity and richness of major functional groups and partly explained variance in composition of putative fungal pathogens. Our results suggest that climate and plant invasion could affect the diversity and composition of diverse groups of organisms simultaneously and their relative importance might vary among functional groups. Thus, it is necessary to explore latitudinal patterns and underlying drivers of diverse groups of organisms simultaneously to improve our ability to predict and mitigate threats posed by plant invasion and climate change.

Ecological Consequences of Intraspecific Variation in Coevolutionary Systems

AbstractThe patterns and outcomes of coevolution are expected to depend on intraspecific trait variation. Various evolutionary factors can change this variation in time. As a result, modeling coevolutionary processes solely in terms of mean trait values may not be sufficient; one may need to study the dynamics of the whole trait distribution. Here, we develop a theoretical framework for studying the effects of evolving intraspecific variation in two-species coevolutionary systems. In particular, we build and study mathematical models of competition, exploiter-victim interactions, and mutualism in which the strength of within- and between-species interactions depends on the difference in continuously varying traits between individuals reproducing asexually. We use analytical approximations based on the invasion analysis and supplement them with numerical results. We find that intraspecific variation can be maintained if stabilizing selection is weak in at least one species. When intraspecific variation is maintained under competition or mutualism, coexistence in a stable equilibrium is promoted when between-species interactions mostly happen between individuals similar in trait values. In contrast, in exploiter-victim systems coexistence typically requires strong interactions between dissimilar exploiters and victims. We show that trait distributions can become multimodal. Our approach and results contribute to the understanding of the ecological consequences of intraspecific variation in coevolutionary systems by exploring its effects on population densities and trait distributions.

Differences in rhizosphere microbial communities between native and non-native Phragmites australis may depend on stand density

Microorganisms surrounding plant roots may benefit invasive species through enhanced mutualism or decreased antagonism, when compared to surrounding native species. We surveyed the rhizosphere soil microbiome of a prominent invasive plant, Phragmites australis, and its co-occurring native subspecies for evidence of microbial drivers of invasiveness. If the rhizosphere microbial community is important in driving plant invasions, we hypothesized that non-native Phragmites would cultivate a different microbiome from native Phragmites, containing fewer pathogens, more mutualists, or both. We surveyed populations of native and non-native Phragmites across Michigan and Ohio USA, and we described rhizosphere microbial communities using culture-independent next-generation sequencing. We found little evidence that native and non-native Phragmites cultivate distinct bacterial, fungal, or oomycete rhizosphere communities. Microbial community differences in our Michigan survey were not associated with plant lineage but were mainly driven by environmental factors, such as soil saturation and nutrient concentrations. Intensive sampling along transects consisting of dense monocultures of each lineage and mixed zones revealed bacterial community differences between lineages in dense monoculture, but not in mixture. We found no evidence of functional differences in the microbial communities surrounding each lineage. We extrapolate that the invasiveness of non-native Phragmites, when compared to its native congener, does not result from the differential cultivation of beneficial or antagonistic rhizosphere microorganisms.

Phragmites australis Associates with Belowground Fungal Communities Characterized by High Diversity and Pathogen Abundance

Microbial symbionts are gaining attention as crucial drivers of invasive species spread and dominance. To date, much research has quantified the net effects of plant–microbe interactions on the relative success of native and invasive species. However, little is known about how the structure (composition and diversity) of microbial symbionts can differ among native and invasive species, or vary across the invasive landscape. Here, we explore the structure of endosphere and soil fungal communities associated with a monoculture-forming widespread invader, Phragmites australis, and co-occurring native species. Using field survey data from marshes in coastal Louisiana, we tested three hypotheses: (1) Phragmites australis root and soil fungal communities differ from that of co-occurring natives, (2) Phragmites australis monocultures harbor distinct fungal communities at the expanding edge compared to the monodominant center, and (3) proximity to the P. australis invading front alters native root endosphere and soil fungal community structure. We found that P. australis cultivates root and soil fungal communities with higher richness, diversity, and pathogen abundances compared to native species. While P. australis was found to have higher endosphere pathogen abundances at its expanding edge compared to the monodominant center, we found no evidence of compositional changes or pathogen spillover in native species in close proximity to the invasion front. This work suggests that field measurements of fungal endosphere communities in native and invasive plants are useful to help understand (or rule out) mechanisms of invasion.

The independent effects of nutrient enrichment and pulsed nutrient delivery on a common wetland invader and its native conspecific

Human activities often lead natural systems to be nutrient enriched, with anthropogenically derived nutrients commonly delivered in discrete pulses. Both nutrient enrichment and nutrient pulses can impact plant performance and phenotypic plasticity, especially in invasive species, but quantifying their independent effects remains challenging. To explore the effects of nutrient enrichment and nutrient pulse magnitude, we established a common garden experiment using the North American wetland invader Phragmites australis and its native conspecific Phragmites australis subsp. americanus (five source populations each). We exposed plants to three levels of nutrient enrichment that were delivered either in small or large-magnitude pulses, examining productivity and plasticity responses over a single growing season. Productivity and biomass allocation differed by lineage, with invasive Phragmites producing 73% more biomass and 66% more culms, but with the native growing 31% taller and allocating more of its biomass belowground. Contrary to expectations, both lineages responded similarly to nutrient enrichment and were similarly plastic in their traits. Nutrient enrichment, rather than nutrient pulses, led to large productivity gains and trait plasticity magnitudes. However, total biomass and leaf-level traits (specific leaf area and chlorophyll concentration) were responsive to variation in nutrient pulse magnitudes. By decoupling the effects of nutrient enrichment from nutrient pulses, our study demonstrates the independent effects of these two key factors for plant performance and, by extension, invasion success. We report trait-based similarities between two lineages of Phragmites that play contrasting ecological roles in North American wetlands, and we highlight the potentially detrimental effects of nutrient pulses.

A native parasitic plant and soil microorganisms facilitate a native plant co-occurrence with an invasive plant

Invasive plants often interact with antagonists that include native parasitic plants and pathogenic soil microbes, which may reduce fitness of the invaders. However, to date, most of the studies on the ecological consequences of antagonistic interactions between invasive plants and the resident biota focused only on pairwise interactions. A full understanding of invasion dynamics requires studies that test the effects of multiple antagonists on fitness of invasive plants and co-occurring native plants. Here, we used an invasive plant Mikania micrantha, a co-occurring native plant Coix lacryma-jobi, and a native holoparasitic plant Cuscuta campestris to test whether parasitism on M. micrantha interacts with soil fungi and bacteria to reduce fitness of the invader and promote growth of the co-occurring native plant. In a factorial setup, M. micrantha and C. lacryma-jobi were grown together in pots in the presence versus absence of parasitism on M. micrantha by C. campestris and in the presence versus absence of full complements of soil bacteria and fungi. Fungicide and bactericide were used to suppress soil fungi and bacteria, respectively. Findings show that heavy parasitism by C. campestris caused the greatest reduction in M. micrantha biomass when soil fungi and bacteria were suppressed. In contrast, the co-occurring native plant C. lacryma-jobi experienced the greatest increase in biomass when grown with heavily parasitized M. micrantha and in the presence of a full complement of soil fungi and bacteria. Taken together, our results suggest that selective parasitism on susceptible invasive plants by native parasitic plants and soil microorganisms may diminish competitive ability of invasive plants and facilitate native plant coexistence with invasive plants.