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Bucholz JR, Hopper GW, González IS, Kelley TE, Jackson CR, Garrick RC, Atkinson CL, Lozier JD. Community-wide correlations between species richness, abundance and population genomic diversity in a freshwater biodiversity hotspot. Mol Ecol 2023; 32:5894-5912. [PMID: 37203688 DOI: 10.1111/mec.16991] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 02/16/2023] [Accepted: 05/04/2023] [Indexed: 05/20/2023]
Abstract
Understanding patterns of diversity across macro (e.g. species-level) and micro (e.g. molecular-level) scales can shed light on community function and stability by elucidating the abiotic and biotic drivers of diversity within ecological communities. We examined the relationships among taxonomic and genetic metrics of diversity in freshwater mussels (Bivalvia: Unionidae), an ecologically important and species-rich group in the southeastern United States. Using quantitative community surveys and reduced-representation genome sequencing across 22 sites in seven rivers and two river basins, we surveyed 68 mussel species and sequenced 23 of these species to characterize intrapopulation genetic variation. We tested for the presence of species diversity-abundance correlations (i.e. the more-individuals hypothesis, MIH), species-genetic diversity correlations (SGDCs) and abundance-genetic diversity correlations (AGDCs) across all sites to evaluate relationships between different metrics of diversity. Sites with greater cumulative multispecies density (a standardized metric of abundance) had a greater number of species, consistent with the MIH hypothesis. Intrapopulation genetic diversity was strongly associated with the density of most species, indicating the presence of AGDCs. However, there was no consistent evidence for SGDCs. Although sites with greater overall densities of mussels had greater species richness, sites with higher genetic diversity did not always exhibit positive correlations with species richness, suggesting that there are spatial and evolutionary scales at which the processes influencing community-level diversity and intraspecific diversity differ. Our work reveals the importance of local abundance as indicator (and possibly a driver) of intrapopulation genetic diversity.
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Affiliation(s)
- Jamie R Bucholz
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama, USA
| | - Garrett W Hopper
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama, USA
| | | | - Taylor E Kelley
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama, USA
| | - Colin R Jackson
- Department of Biology, University of Mississippi, Mississippi, Mississippi, USA
| | - Ryan C Garrick
- Department of Biology, University of Mississippi, Mississippi, Mississippi, USA
| | - Carla L Atkinson
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama, USA
| | - Jeffrey D Lozier
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama, USA
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Sedláček O, Pernice R, Ferenc M, Mudrová K, Motombi FN, Albrecht T, Hořák D. Abundance variations within feeding guilds reveal ecological mechanisms behind avian species richness pattern along the elevational gradient of Mount Cameroon. Biotropica 2023. [DOI: 10.1111/btp.13221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
Affiliation(s)
- Ondřej Sedláček
- Department of Ecology, Faculty of Science Charles University Viničná 7 Praha 2 128 44 Czech Republic
| | - Riccardo Pernice
- Department of Ecology, Faculty of Science Charles University Viničná 7 Praha 2 128 44 Czech Republic
| | - Michal Ferenc
- Department of Ecology, Faculty of Science Charles University Viničná 7 Praha 2 128 44 Czech Republic
| | - Karolína Mudrová
- Department of Ecology, Faculty of Science Charles University Viničná 7 Praha 2 128 44 Czech Republic
| | | | - Tomáš Albrecht
- Institute of Vertebrate Biology Czech Academy of Sciences Brno Czech Republic
- Department of Zoology, Faculty of Science Charles University Viničná 7 Praha 2 128 44 Czech Republic
| | - David Hořák
- Department of Ecology, Faculty of Science Charles University Viničná 7 Praha 2 128 44 Czech Republic
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3
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Delabye S, Storch D, Sedláček O, Albrecht T, Hořák D, Maicher V, Tószögyová A, Tropek R. Moth Diversity Increases along a Continent-Wide Gradient of Environmental Productivity in South African Savannahs. INSECTS 2022; 13:778. [PMID: 36135479 PMCID: PMC9500993 DOI: 10.3390/insects13090778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 08/22/2022] [Accepted: 08/26/2022] [Indexed: 06/16/2023]
Abstract
Environmental productivity, i.e., the amount of biomass produced by primary producers, belongs among the key factors for the biodiversity patterns. Although the relationship of diversity to environmental productivity differs among studied taxa, detailed data are largely missing for most groups, including insects. Here, we present a study of moth diversity patterns at local and regional scales along a continent-wide gradient of environmental productivity in southern African savannah ecosystems. We sampled diversity of moths (Lepidoptera: Heterocera) at 120 local plots along a gradient of normalized difference vegetation index (NDVI) from the Namib Desert to woodland savannahs along the Zambezi River. By standardized light trapping, we collected 12,372 specimens belonging to 487 moth species. The relationship between species richness for most analyzed moth groups and environmental productivity was significantly positively linear at the local and regional scales. The absence of a significant relationship of most moth groups' abundance to environmental productivity did not support the role of the number of individuals in the diversity-productivity relationship for south African moths. We hypothesize the effects of water availability, habitat complexity, and plant diversity drive the observed moth diversity patterns.
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Affiliation(s)
- Sylvain Delabye
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
- Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 37005 České Budějovice, Czech Republic
- Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005 České Budějovice, Czech Republic
| | - David Storch
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
- Center for Theoretical Study, Charles University, Prague and the Czech Academy of Sciences, Jilská 1, 11000 Prague, Czech Republic
| | - Ondřej Sedláček
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
| | - Tomáš Albrecht
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
- Institute of Vertebrate Biology, The Czech Academy of Sciences, Studenec 122, 67502 Koněšín, Czech Republic
| | - David Hořák
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
| | - Vincent Maicher
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
- Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 37005 České Budějovice, Czech Republic
- Nicholas School of the Environment, Duke University, 9 Circuit Dr., Durham, NC 27710, USA
| | - Anna Tószögyová
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
- Center for Theoretical Study, Charles University, Prague and the Czech Academy of Sciences, Jilská 1, 11000 Prague, Czech Republic
| | - Robert Tropek
- Departments of Ecology and Zoology, Faculty of Science, Charles University, Viničná 7, 12844 Prague, Czech Republic
- Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 37005 České Budějovice, Czech Republic
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4
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Blowes SA, Daskalova GN, Dornelas M, Engel T, Gotelli NJ, Magurran AE, Martins IS, McGill B, McGlinn DJ, Sagouis A, Shimadzu H, Supp SR, Chase JM. Local biodiversity change reflects interactions among changing abundance, evenness, and richness. Ecology 2022; 103:e3820. [DOI: 10.1002/ecy.3820] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 05/30/2022] [Accepted: 06/02/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Shane A. Blowes
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Germany
- Department of Computer Science Martin Luther University Halle‐Wittenberg Halle (Salle) Germany
| | - Gergana N. Daskalova
- School of GeoSciences University of Edinburgh Scotland, UK
- International Institute for Applied Systems Analysis (IIASA) Laxenburg Austria
| | - Maria Dornelas
- Centre for Biological Diversity University of St Andrews KY16 9TH
| | - Thore Engel
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Germany
- Department of Computer Science Martin Luther University Halle‐Wittenberg Halle (Salle) Germany
| | | | - Anne E. Magurran
- Centre for Biological Diversity University of St Andrews KY16 9TH
| | - Inês S. Martins
- Centre for Biological Diversity University of St Andrews KY16 9TH
- Leverhulme Centre for Anthropocene Biodiversity and Department of Biology University of York York UK
| | - Brian McGill
- School of Biology and Ecology and Mitchell Center for Sustainability Solutions University of Maine Orono, ME United States
| | | | - Alban Sagouis
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Germany
- Department of Computer Science Martin Luther University Halle‐Wittenberg Halle (Salle) Germany
| | - Hideyasu Shimadzu
- Department of Mathematical Sciences Loughborough University UK
- Graduate School of Public Health Teikyo University Tokyo Japan
| | - Sarah R. Supp
- Data Analytics Program Denison University Granville Ohio USA
| | - Jonathan M. Chase
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig Germany
- Department of Computer Science Martin Luther University Halle‐Wittenberg Halle (Salle) Germany
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Yanco SW, McDevitt A, Trueman CN, Hartley L, Wunder MB. A modern method of multiple working hypotheses to improve inference in ecology. ROYAL SOCIETY OPEN SCIENCE 2020; 7:200231. [PMID: 32742690 PMCID: PMC7353960 DOI: 10.1098/rsos.200231] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 05/15/2020] [Indexed: 05/06/2023]
Abstract
Science provides a method to learn about the relationships between observed patterns and the processes that generate them. However, inference can be confounded when an observed pattern cannot be clearly and wholly attributed to a hypothesized process. Over-reliance on traditional single-hypothesis methods (i.e. null hypothesis significance testing) has resulted in replication crises in several disciplines, and ecology exhibits features common to these fields (e.g. low-power study designs, questionable research practices, etc.). Considering multiple working hypotheses in combination with pre-data collection modelling can be an effective means to mitigate many of these problems. We present a framework for explicitly modelling systems in which relevant processes are commonly omitted, overlooked or not considered and provide a formal workflow for a pre-data collection analysis of multiple candidate hypotheses. We advocate for and suggest ways that pre-data collection modelling can be combined with consideration of multiple working hypotheses to improve the efficiency and accuracy of research in ecology.
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Affiliation(s)
- Scott W. Yanco
- Department of Integrative Biology, University of Colorado Denver, Denver, CO, USA
- Author for correspondence: Scott W. Yanco e-mail:
| | - Andrew McDevitt
- Department of Integrative Biology, University of Colorado Denver, Denver, CO, USA
| | - Clive N. Trueman
- Ocean and Earth Science, University of Southampton, National Oceanography Centre, Southampton, UK
| | - Laurel Hartley
- Department of Integrative Biology, University of Colorado Denver, Denver, CO, USA
| | - Michael B. Wunder
- Department of Integrative Biology, University of Colorado Denver, Denver, CO, USA
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