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Schulz A, Surkau J. Main group cyanides: from hydrogen cyanide to cyanido-complexes. REV INORG CHEM 2022. [DOI: 10.1515/revic-2021-0044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Homoleptic cyanide compounds exist of almost all main group elements. While the alkali metals and alkaline earth metals form cyanide salts, the cyanides of the lighter main group elements occur mainly as covalent compounds. This review gives an overview of the status quo of main group element cyanides and cyanido complexes. Information about syntheses are included as well as applications, special substance properties, bond lengths, spectroscopic characteristics and computations. Cyanide chemistry is presented mainly from the field of inorganic chemistry, but aspects of chemical biology and astrophysics are also discussed in relation to cyano compounds.
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Affiliation(s)
- Axel Schulz
- Chemie , Universität Rostock , Albert-Einstein-Straße 3a, 18059 Rostock , Mecklenburg-Vorpommern , Germany
| | - Jonas Surkau
- Chemie , Universität Rostock , Albert-Einstein-Straße 3a, 18059 Rostock , Mecklenburg-Vorpommern , Germany
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2
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Ishigaki Y, Asai K, Jacquot de Rouville HP, Shimajiri T, Hu J, Heitz V, Suzuki T. Solid-State Assembly by Chelating Chalcogen Bonding in Quinodimethane Tetraesters Fused with a Chalcogenadiazole. Chempluschem 2022; 87:e202200075. [PMID: 35420722 DOI: 10.1002/cplu.202200075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 03/23/2022] [Indexed: 11/09/2022]
Abstract
In contrast to p-quinodimethane tetraesters, which undergo facile polymerization due to their diradical character, newly synthesized 1 and 2 consisting of a chalcogenadiazole fused to a p-naphthoquinodimethane tetraester are thermodynamically stable due to butterfly-shaped deformation. Such a folded molecular structure is also favorable for chalcogen bond (ChB) formation through intermolecular close contacts between a chalcogen atom (E: Se or S) and the oxygen atoms of ester groups in a crystal. The less-explored chelating-ChB through a C=O⋅⋅⋅E⋅⋅⋅O=C contact [Se⋅⋅⋅O: 2.94-3.37 Å] is the key supramolecular synthon for the formation of a one-dimensional rod-like assembly in a crystal, which is commonly observed in selenadiazole-tetraesters (1) with OMe, OEt, and OiPr groups. The formation of inclusion cavities between the rods shows that 1 could serve as solid-state host molecules for clathrate formation, as found in a hexane-solvated crystal. In contrast, thiadiazole-tetraesters (2) are less suitable for the formation of a rod-like assembly since the ChB involving S is less effective, and thus is overwhelmed by weak hydrogen bonds through C-H⋅⋅⋅O contacts.
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Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Kota Asai
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Henri-Pierre Jacquot de Rouville
- Laboratoire de Synthèse des Assemblages Moléculaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Takuya Shimajiri
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Johnny Hu
- Laboratoire de Synthèse des Assemblages Moléculaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Valérie Heitz
- Laboratoire de Synthèse des Assemblages Moléculaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Takanori Suzuki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
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3
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Ishigaki Y, Shimomura K, Asai K, Shimajiri T, Akutagawa T, Fukushima T, Suzuki T. Chalcogen Bond versus Halogen Bond: Changing Contributions in Determining the Crystal Packing of Dihalobenzochalcogenadiazoles. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2022. [DOI: 10.1246/bcsj.20220008] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Kai Shimomura
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Kota Asai
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Takuya Shimajiri
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Tomoyuki Akutagawa
- Institute of Multidisiplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577 Japan
| | - Takanori Fukushima
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama 226-8503, Japan
| | - Takanori Suzuki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
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4
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Kumar V, Triglav M, Morin VM, Bryce DL. Predictability of Chalcogen-Bond-Driven Crystal Engineering: An X-ray Diffraction and Selenium-77 Solid-State NMR Investigation of Benzylic Selenocyanate Cocrystals. ACS ORGANIC & INORGANIC AU 2022; 2:252-260. [PMID: 36855468 PMCID: PMC9954200 DOI: 10.1021/acsorginorgau.1c00051] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We describe a series of new chalcogen-bonded cocrystals featuring 1,2-bis(selenocyanatomethyl)benzene (DSN) and 1,2,4,5-tetrakis(selenocyanatomethyl)-benzene (TSN) as the donor moieties and a variety of Lewis bases such as onium halides, N-oxides, and pyridine-containing heterocycles as the acceptors. Single-crystal X-ray diffraction demonstrates that, in every case, the selenocyanates consistently interact with the acceptor molecules through strong and directional Se···X chalcogen-bonds (ChBs) (X = halides, oxygen, and nitrogen). 77Se solid-state nuclear magnetic resonance spectroscopy was applied to measure selenium chemical shift tensor magnitudes and to explore potential correlations between these tensor elements and the local ChB geometry. In every case, the isotropic 77Se chemical shift decreases, and the chemical shift tensor span increases upon cocrystallization of DSN with the various ChB acceptors. This work contributes to a growing body of knowledge concerning the predictability and robustness of chalcogen bonds in crystal engineering as well as the NMR response to the establishment of chalcogen bonds. In particular, among the systems studied here, highly linear chalcogen bonds are formed exclusively at the stronger σ-hole of each and every selenium atom regardless of the size, charge, or denticity of the electron donor moiety.
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Ishigaki Y, Asai K, Shimajiri T, Suzuki T. [1,2,5]Chalcogenadiazole-fused Dicyanonaphthoquinodiimines: Larger Contribution from Chalcogen Bond than Weak Hydrogen Bond in Determining Crystal Structures. CHEM LETT 2021. [DOI: 10.1246/cl.210095] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
| | - Kota Asai
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
| | - Takuya Shimajiri
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
| | - Takanori Suzuki
- Department of Chemistry, Faculty of Science, Hokkaido University, N10, W8, North-ward, Sapporo, Hokkaido 060-0810, Japan
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6
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Ishigaki Y, Asai K, Rouville HJ, Shimajiri T, Heitz V, Fujii‐Shinomiya H, Suzuki T. Molecular Recognition by Chalcogen Bond: Selective Charge‐Transfer Crystal Formation of Dimethylnaphthalene with Selenadiazolotetracyanonaphthoquinodimethane. European J Org Chem 2021. [DOI: 10.1002/ejoc.202001554] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Yusuke Ishigaki
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Kota Asai
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Henri‐Pierre Jacquot Rouville
- Institut de Chimie de Strasbourg CNRS UMR 7177 Université de Strasbourg 4, rue Blaise Pascal 67000 Strasbourg France
| | - Takuya Shimajiri
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
| | - Valérie Heitz
- Institut de Chimie de Strasbourg CNRS UMR 7177 Université de Strasbourg 4, rue Blaise Pascal 67000 Strasbourg France
| | - Hiroshi Fujii‐Shinomiya
- Department of Chemistry Faculty of Science Tohoku University Sendai 980-8578 Japan
- On leave from Mitsubishi Oil Company, Co. Ltd
| | - Takanori Suzuki
- Department of Chemistry Faculty of Science Hokkaido University Sapporo 060-0810 Japan
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7
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Scilabra P, Terraneo G, Resnati G. The Chalcogen Bond in Crystalline Solids: A World Parallel to Halogen Bond. Acc Chem Res 2019; 52:1313-1324. [PMID: 31082186 DOI: 10.1021/acs.accounts.9b00037] [Citation(s) in RCA: 259] [Impact Index Per Article: 51.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The distribution of the electron density around covalently bonded atoms is anisotropic, and this determines the presence, on atoms surface, of areas of higher and lower electron density where the electrostatic potential is frequently negative and positive, respectively. The ability of positive areas on atoms to form attractive interactions with electron rich sites became recently the subject of a flurry of papers. The halogen bond (HaB), the attractive interaction formed by halogens with nucleophiles, emerged as a quite common and dependable tool for controlling phenomena as diverse as the binding of small molecules to proteinaceous targets or the organization of molecular functional materials. The mindset developed in relation to the halogen bond prompted the interest in the tendency of elements of groups 13-16 of the periodic table to form analogous attractive interactions with nucleophiles. This Account addresses the chalcogen bond (ChB), the attractive interaction formed by group 16 elements with nucleophiles, by adopting a crystallographic point of view. Structures of organic derivatives are considered where chalcogen atoms form close contacts with nucleophiles in the geometry typical for chalcogen bonds. It is shown how sulfur, selenium, and tellurium can all form chalcogen bonds, the tendency to give rise to close contacts with nucleophiles increasing with the polarizability of the element. Also oxygen, when conveniently substituted, can form ChBs in crystalline solids. Chalcogen bonds can be strong enough to allow for the interaction to function as an effective and robust tool in crystal engineering. It is presented how chalcogen containing heteroaromatics, sulfides, disulfides, and selenium and tellurium analogues as well as some other molecular moieties can afford dependable chalcogen bond based supramolecular synthons. Particular attention is given to chalcogen containing azoles and their derivatives due to the relevance of these moieties in biosystems and molecular materials. It is shown how the interaction pattern around electrophilic chalcogen atoms frequently recalls the pattern around analogous halogen, pnictogen, and tetrel derivatives. For instance, directionalities of chalcogen bonds around sulfur and selenium in some thiazolium and selenazolium derivatives are similar to directionalities of halogen bonds around bromine and iodine in bromonium and iodonium compounds. This gives experimental evidence that similarities in the anisotropic distribution of the electron density in covalently bonded atoms translates in similarities in their recognition and self-assembly behavior. For instance, the analogies in interaction patterns of carbonitrile substituted elements of groups 17, 16, 15, and 14 will be presented. While the extensive experimental and theoretical data available in the literature prove that HaB and ChB form twin supramolecular synthons in the solid, more experimental information has to become available before such a statement can be safely extended to interactions wherein elements of groups 14 and 15 are the electrophiles. It will nevertheless be possible to develop some general heuristic principles for crystal engineering. Being based on the groups of the periodic table, these principles offer the advantage of being systematic.
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Affiliation(s)
- Patrick Scilabra
- Department of Chemistry, Materials, and Chemical Engineering ’’Giulio Natta’’, Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy
| | - Giancarlo Terraneo
- Department of Chemistry, Materials, and Chemical Engineering ’’Giulio Natta’’, Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy
| | - Giuseppe Resnati
- Department of Chemistry, Materials, and Chemical Engineering ’’Giulio Natta’’, Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy
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8
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Murray JS, Resnati G, Politzer P. Close contacts and noncovalent interactions in crystals. Faraday Discuss 2019; 203:113-130. [PMID: 28731117 DOI: 10.1039/c7fd00062f] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Close contacts, defined as interatomic separations less than the sum of the respective van der Waals radii, are commonly invoked to identify attractive nonbonded interactions in crystal lattices. While this is often effective, it can also be misleading because (a) there are significant uncertainties associated with van der Waals radii, and (b) it may not be valid to attribute the interactions solely to specific pairs of atoms. The interactions within crystal lattices are Coulombic, and the strongest positive and/or negative regions do not always correspond to the positions of atoms; they are sometimes located between atoms. Examples of both types are given and discussed, focusing in particular upon σ-hole interactions.
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Affiliation(s)
- Jane S Murray
- Department of Chemistry, University of New Orleans, New Orleans, LA 70148, USA.
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9
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Riel AMS, Jeannin O, Berryman OB, Fourmigué M. Co-crystals of an organic triselenocyanate with ditopic Lewis bases: recurrent chalcogen bond interactions motifs. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS 2019; 75:34-38. [DOI: 10.1107/s2052520618017778] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Accepted: 12/15/2018] [Indexed: 01/24/2023]
Abstract
Organic selenocyanates R–Se–CN can act as an amphoteric chalcogen bond (ChB) donor (through the Se atom) and acceptor (through the N atom lone pair). Co-crystallization of tri-substituted 1,3,5-tris(selenocyanatomethyl)-2,4,6-trimethylbenzene (1) is investigated with different ditopic Lewis bases acting as chalcogen bond (ChB) acceptors to investigate the outcome of the competition, as ChB acceptor, between the nitrogen lone pair of the SeCN group and other Lewis bases involving pyridinyl or carbonyl functions. In the presence of tetramethylpyrazine (TMP), benzoquinone (BQ) and para-dinitrobenzene (pDNB) as ditopic Lewis bases, a recurrent oligomeric motif stabilized by six ChB interactions is observed, involving six SeCN groups and the ChB acceptor sites of TMP, BQ and pDNB in the 2:1 adducts (1)2·TMP, (1)2·BQ and (1)2·pDNB.
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10
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Huynh HT, Jeannin O, Fourmigué M. Organic selenocyanates as strong and directional chalcogen bond donors for crystal engineering. Chem Commun (Camb) 2018; 53:8467-8469. [PMID: 28703236 DOI: 10.1039/c7cc04833e] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Organic bis(selenocyanate) derivatives act as powerful chalcogen bond donors for the elaboration of 1D extended structures upon co-crystallization with 4,4'-bipyridine as a ditopic chalcogen bond acceptor.
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Affiliation(s)
- Huu-Tri Huynh
- Institut des Sciences Chimiques de Rennes (ISCR), UMR 6226 Université de Rennes 1 and CNRS, Campus de Beaulieu, 35042 Rennes, France.
| | - Olivier Jeannin
- Institut des Sciences Chimiques de Rennes (ISCR), UMR 6226 Université de Rennes 1 and CNRS, Campus de Beaulieu, 35042 Rennes, France.
| | - Marc Fourmigué
- Institut des Sciences Chimiques de Rennes (ISCR), UMR 6226 Université de Rennes 1 and CNRS, Campus de Beaulieu, 35042 Rennes, France.
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11
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Abstract
A covalently-bonded atom typically has a region of lower electronic density, a "σ-hole," on the side of the atom opposite to the bond, along its extension. There is frequently a positive electrostatic potential associated with this region, through which the atom can interact attractively but noncovalently with negative sites. This positive potential reflects not only the lower electronic density of the σ-hole but also contributions from other portions of the molecule. These can significantly influence both the value and also the angular position of the positive potential, causing it to deviate from the extension of the covalent bond. We have surveyed these effects, and their consequences for the directionalities of subsequent noncovalent intermolecular interactions, for atoms of Groups IV-VII. The overall trends are that larger deviations of the positive potential result in less linear intermolecular interactions, while smaller deviations lead to more linear interactions. We find that the deviations of the positive potentials and the nonlinearities of the noncovalent interactions tend to be greatest for atoms of Groups V and VI. We also present arguments supporting the use of the 0.001 a.u. contour of the electronic density as the molecular surface on which to compute the electrostatic potential.
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Affiliation(s)
- Peter Politzer
- Department of Chemistry, University of New Orleans, New Orleans, LA 70148, USA.
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12
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Frogley BJ, Hill AF, Manzano RA, Sharma M. Bis(alkylidynyl)tellurides and ditellurides. Chem Commun (Camb) 2018; 54:1702-1705. [DOI: 10.1039/c7cc08776d] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The tellurocarbonylates [M(CTe)(CO)2(Tp*)]− (M = Mo, W; obtained from [M(CBr)(CO)2(Tp*)] and Li2Te or [M(CLi)(CO)2(Tp*)] and Te) react with an additional equivalent of [M(CBr)(CO)2(Tp*)] to give bis(alkylidynyl)tellurides, [M2(μ-CTeC)(CO)4(Tp*)2], whilst oxidation with [Fe(η-C5H5)2]PF6 affords the corresponding ditellurides [M2(μ-CTe2C)(CO)4(Tp*)2].
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Affiliation(s)
| | - Anthony F. Hill
- Research School of Chemistry
- Australian National University
- Canberra
- Australia
| | - Richard A. Manzano
- Research School of Chemistry
- Australian National University
- Canberra
- Australia
| | - Manab Sharma
- Research School of Chemistry
- Australian National University
- Canberra
- Australia
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13
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Scilabra P, Terraneo G, Resnati G. Fluorinated elements of Group 15 as pnictogen bond donor sites. J Fluor Chem 2017. [DOI: 10.1016/j.jfluchem.2017.10.002] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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14
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Cavallo G, Murray JS, Politzer P, Pilati T, Ursini M, Resnati G. Halogen bonding in hypervalent iodine and bromine derivatives: halonium salts. IUCRJ 2017; 4:411-419. [PMID: 28875028 PMCID: PMC5571804 DOI: 10.1107/s2052252517004262] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2017] [Accepted: 03/16/2017] [Indexed: 06/07/2023]
Abstract
Halogen bonds have been identified in a series of ionic compounds involving bromonium and iodonium cations and several different anions, some also containing hypervalent atoms. The hypervalent bromine and iodine atoms in the examined compounds are found to have positive σ-holes on the extensions of their covalent bonds, while the hypervalent atoms in the anions have negative σ-holes. The positive σ-holes on the halogens of the studied halonium salts determine the linearity of the short contacts between the halogen and neutral or anionic electron donors, as usual in halogen bonds.
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Affiliation(s)
- Gabriella Cavallo
- NFMLab, Department of Chemistry, Materials and Chemical Engineering ‘Giulio Natta’, via Mancinelli 7, Milan I-20131, Italy
| | - Jane S. Murray
- Department of Chemistry, University of New Orleans, New Orleans, LA 70148, USA
| | - Peter Politzer
- Department of Chemistry, University of New Orleans, New Orleans, LA 70148, USA
| | - Tullio Pilati
- NFMLab, Department of Chemistry, Materials and Chemical Engineering ‘Giulio Natta’, via Mancinelli 7, Milan I-20131, Italy
| | - Maurizio Ursini
- NFMLab, Department of Chemistry, Materials and Chemical Engineering ‘Giulio Natta’, via Mancinelli 7, Milan I-20131, Italy
| | - Giuseppe Resnati
- NFMLab, Department of Chemistry, Materials and Chemical Engineering ‘Giulio Natta’, via Mancinelli 7, Milan I-20131, Italy
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Affiliation(s)
- Stefanie Fritz
- Institut für
Chemie und Biochemie, Anorganische
Chemie, Freie Universität Berlin, Fabeckstrasse 34/36, 14195 Berlin, Germany
| | - Christian Ehm
- Institut für
Chemie und Biochemie, Anorganische
Chemie, Freie Universität Berlin, Fabeckstrasse 34/36, 14195 Berlin, Germany
| | - Dieter Lentz
- Institut für
Chemie und Biochemie, Anorganische
Chemie, Freie Universität Berlin, Fabeckstrasse 34/36, 14195 Berlin, Germany
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16
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George J, Deringer VL, Dronskowski R. Dimensionality of Intermolecular Interactions in Layered Crystals by Electronic-Structure Theory and Geometric Analysis. Inorg Chem 2014; 54:956-62. [DOI: 10.1021/ic5023328] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Janine George
- Institute
of Inorganic Chemistry, Chair of Solid-State and Quantum Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Volker L. Deringer
- Institute
of Inorganic Chemistry, Chair of Solid-State and Quantum Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Richard Dronskowski
- Institute
of Inorganic Chemistry, Chair of Solid-State and Quantum Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
- Jülich-Aachen
Research Alliance (JARA-HPC), RWTH Aachen University, 52056 Aachen, Germany
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17
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Alikhani E, Fuster F, Madebene B, Grabowski SJ. Topological reaction sites--very strong chalcogen bonds. Phys Chem Chem Phys 2014; 16:2430-42. [PMID: 24358473 DOI: 10.1039/c3cp54208d] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The analysis of interactions in complexes of S(CN)2, Se(CN)2, SFCl and SeFCl with F(-) and Cl(-) anions is performed here. The sulphur and selenium atoms act in these complexes as Lewis acid centres interacting with fluorine and chlorine anions. The arrangement of sub-units in complexes is in agreement with the σ-hole concept; particularly it is a result of contacts between positive and negative electrostatic potential sites. The interactions in complexes analyzed may be classified as very strong charge assisted chalcogen bonds and they possess numerous characteristics typical for covalent bonds. Even in the case of complexes of SFCl and SeFCl, i.e. SFCl2(-) and SeFCl2(-), the trivalency of the chalcogen atom is observed. The calculations were carried out at the MP2(full)/aug-cc-pVTZ level of approximation, the analyses were performed with the use of the Natural Bond Orbital (NBO) method, the Quantum Theory of 'Atoms in Molecules' (QTAIM) and the Electron Localization Function (ELF) approach. The results obtained by these methods are in agreement giving the consistent picture of the complexes' configurations and their electron charge distribution. The QTAIM and ELF approaches allow us to predict for S(CN)2, Se(CN)2, SFCl and SeFCl molecules the directions of nucleophilic attack. They are in line with the prediction based on the σ-hole concept. The Symmetry Adapted Perturbation Theory (SAPT) approach was also applied.
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Affiliation(s)
- Esmail Alikhani
- UPMC Univ. Paris 06, UMR 7075, Laboratoire de Dynamique, Interactions et Réactivité (LADIR), F-75005, Paris, France.
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18
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George J, Deringer VL, Dronskowski R. Cooperativity of Halogen, Chalcogen, and Pnictogen Bonds in Infinite Molecular Chains by Electronic Structure Theory. J Phys Chem A 2014; 118:3193-200. [DOI: 10.1021/jp5015302] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Janine George
- Institute
of Inorganic Chemistry, Chair of Solid-State and Quantum Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Volker L. Deringer
- Institute
of Inorganic Chemistry, Chair of Solid-State and Quantum Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Richard Dronskowski
- Institute
of Inorganic Chemistry, Chair of Solid-State and Quantum Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
- Jülich-Aachen
Research Alliance (JARA-HPC), RWTH Aachen University, 52056 Aachen, Germany
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19
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20
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Fritz S, Lentz D, Szwak M. Synthesis and Structure Determination of Selenium(IV) Cyanides. Eur J Inorg Chem 2008. [DOI: 10.1002/ejic.200800712] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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21
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Klapötke TM, Krumm B, Scherr M. Homoleptic Selenium Cyanides: Attempted Preparation of Se(CN)4 and Redetermination of the Crystal Structure of Se(CN)2. Inorg Chem 2008; 47:7025-8. [DOI: 10.1021/ic801011g] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Thomas M. Klapötke
- Department of Chemistry and Biochemistry, Ludwig-Maximilian University of Munich, Butenandtstr. 5-13(D), D-81377 Munich, Germany
| | - Burkhard Krumm
- Department of Chemistry and Biochemistry, Ludwig-Maximilian University of Munich, Butenandtstr. 5-13(D), D-81377 Munich, Germany
| | - Matthias Scherr
- Department of Chemistry and Biochemistry, Ludwig-Maximilian University of Munich, Butenandtstr. 5-13(D), D-81377 Munich, Germany
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Burchell CJ, Kilian P, Slawin AMZ, Woollins JD, Tersago K, Van Alsenoy C, Blockhuys F. E2(CN)2 (E = S, Se) and related compounds. Inorg Chem 2006; 45:710-6. [PMID: 16411706 DOI: 10.1021/ic0515103] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A synthetic, spectroscopic, and theoretical study of Ex(CN)2 (E = S, Se; x = 1-3) is described. The X-ray structures of Se2(CN)2 and Se3(CN)2 have been determined. Se2(CN)2 crystallizes in a chiral space group with the CN groups approximately gauche.
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Affiliation(s)
- Colin J Burchell
- Department of Chemistry, University of St. Andrews, St. Andrews, Fife KY16 9ST, Scotland, U.K
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Klapötke TM, Krumm B, Mayer P, Polborn K, Schwab I. Some Investigations on Organotellurium(IV) Cyanides. Z Anorg Allg Chem 2005. [DOI: 10.1002/zaac.200500108] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Lentz D, Szwak M. Synthesis and Structure Determination of Tellurium Tetracyanide Solvates: Pseudopolymorphism of Te(CN)4 and TeF4. Angew Chem Int Ed Engl 2005; 44:5079-82. [PMID: 16034990 DOI: 10.1002/anie.200500168] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Dieter Lentz
- Fachbereich Biologie, Chemie, Pharmazie, Institut für Chemie-Anorganische und Analytische Chemie, Freie Universität Berlin, Fabeckstrasse 34-36, 14195 Berlin, Germany.
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Lentz D, Szwak M. Synthese und Strukturuntersuchung von Tellurtetracyanid-Solvaten: Pseudopolymorphie bei Te(CN)4 und TeF4. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200500168] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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