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Gasevic T, Kleine Büning JB, Grimme S, Bursch M. Benchmark Study on the Calculation of 207Pb NMR Chemical Shifts. Inorg Chem 2024; 63:5052-5064. [PMID: 38446045 PMCID: PMC10951955 DOI: 10.1021/acs.inorgchem.3c04539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 02/08/2024] [Accepted: 02/14/2024] [Indexed: 03/07/2024]
Abstract
A benchmark set for the computation of 207Pb nuclear magnetic resonance (NMR) chemical shifts is presented. The PbS50 set includes conformer ensembles of 50 lead-containing molecular compounds and their experimentally measured 207Pb NMR chemical shifts. Various bonding motifs at the Pb center with up to seven bonding partners are included. Six different solvents were used in the measurements. The respective shifts lie in the range between +10745 and -5030 ppm. Several calculation settings are assessed by evaluating computed 207Pb NMR shifts for the use with different density functional approximations (DFAs), relativistic approaches, treatment of the conformational space, and levels for geometry optimization. Relativistic effects were included explicitly with the zeroth order regular approximation (ZORA), for which only the spin-orbit variant was able to yield reliable results. In total, seven GGAs and three hybrid DFAs were tested. Hybrid DFAs significantly outperform GGAs. The most accurate DFAs are mPW1PW with a mean absolute deviation (MAD) of 429 ppm and PBE0 with an MAD of 446 ppm. Conformational influences are small as most compounds are rigid, but more flexible structures still benefit from Boltzmann averaging. Including explicit relativistic treatments such as SO-ZORA in the geometry optimization does not show any significant improvement over the use of effective core potentials (ECPs).
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Affiliation(s)
- Thomas Gasevic
- Mulliken
Center for Theoretical Chemistry, Clausius Institute for Physical
and Theoretical Chemistry, University of
Bonn, Beringstr. 4, 53115 Bonn, Germany
| | - Julius B. Kleine Büning
- Mulliken
Center for Theoretical Chemistry, Clausius Institute for Physical
and Theoretical Chemistry, University of
Bonn, Beringstr. 4, 53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken
Center for Theoretical Chemistry, Clausius Institute for Physical
and Theoretical Chemistry, University of
Bonn, Beringstr. 4, 53115 Bonn, Germany
| | - Markus Bursch
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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Huedo C, Zani F, Mendiola A, Pradhan S, Sinha C, López-Torres E. Synthesis, antimicrobial activity and molecular docking of di- and triorganotin (IV) complexes with thiosemicarbazide derivatives. Appl Organomet Chem 2018. [DOI: 10.1002/aoc.4700] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Claudia Huedo
- Departamento de Química Inorgánica; Universidad Autónoma de Madrid; C/Francisco Tomás y Valiente 7 28049 Madrid Spain
| | - Franca Zani
- Dipartimento di Farmacia; Università degli Studi di Parma; Parco Area delle Scienze 27/A 43124 Parma Italy
| | - Antonia Mendiola
- Departamento de Química Inorgánica; Universidad Autónoma de Madrid; C/Francisco Tomás y Valiente 7 28049 Madrid Spain
| | - Sayantan Pradhan
- Department of Chemistry; Jadavpur University; Kolkata 700 032 India
| | | | - Elena López-Torres
- Departamento de Química Inorgánica; Universidad Autónoma de Madrid; C/Francisco Tomás y Valiente 7 28049 Madrid Spain
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Stylidou V, Kavaratzi K, Papazoglou I, Hatzidimitriou AG, Papadopoulos AG, Angaridis P, Aslanidis P. Binuclear Copper(I) Compounds with N-Heterocyclic Thiolate and Diphosphane Ligands: Effects of Thiolate Ligands on Solid-State Molecular Structures and Luminescence Properties. Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201800076] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Vilelmini Stylidou
- Laboratory of Inorganic Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; University Campus 54124 Thessaloniki Greece
| | - Konstantina Kavaratzi
- Laboratory of Inorganic Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; University Campus 54124 Thessaloniki Greece
| | - Ioannis Papazoglou
- Laboratory of Inorganic Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; University Campus 54124 Thessaloniki Greece
| | - Antonios G. Hatzidimitriou
- Laboratory of Inorganic Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; University Campus 54124 Thessaloniki Greece
| | - Anastasios G. Papadopoulos
- Laboratory of Applied Quantum Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; 54124 Thessaloniki Greece
| | - Panagiotis Angaridis
- Laboratory of Inorganic Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; University Campus 54124 Thessaloniki Greece
| | - Paraskevas Aslanidis
- Laboratory of Inorganic Chemistry; Department of Chemistry; Aristotle University of Thessaloniki; University Campus 54124 Thessaloniki Greece
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Barreiro S, Durán-Carril ML, Viqueira J, Sousa-Pedrares A, García-Vázquez JA, Romero J. Structural studies and bioactivity of diorganotin(IV) complexes of pyridin-2-thionato derivatives. J Organomet Chem 2015. [DOI: 10.1016/j.jorganchem.2015.05.030] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Schwade VD, Lang ES, Floriano L. A three-dimensional metal-organic polymer: poly[bis(μ₂-pyrimidine-2-thiolato-κ⁴N¹,S:S,N³)lead(II)]. Acta Crystallogr C Struct Chem 2015; 71:517-20. [PMID: 26146386 DOI: 10.1107/s2053229615010359] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 05/29/2015] [Indexed: 11/10/2022] Open
Abstract
The title compound, [Pb(C4H3N2S)2]n, was prepared by the reaction of [Pb(OAc)2]·3H2O (OAc is acetate) with pyrimidine-2-thione in the presence of triethylamine in methanol. In the crystal structure, the Pb(II) atom has an N4S4 coordination environment with four ligands coordinated by N- and S-donor atoms. This compound shows that the pyrimidine-2-thiolate anion can lead to a three-dimensional network when the coordination number of the metal ion can be higher than 6, as is the case with the Pb(II) ion. This compound presents only covalent bonds, showing that despite the possibility of the hemidirected geometries of Pb(II), the eight-coordinated ion does not allow the formation of an isolated molecular structure with pyrimidine-2-thiolate as the ligand.
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Affiliation(s)
- Vania Denise Schwade
- Faculdade de Ciências Exatas e Tecnologia, Universidade Federal da Grande Dourados, Rodovia Dourados-Itahum, km 12, Dourados-MS 79804-970, Brazil
| | - Ernesto Schulz Lang
- Departamento de Química, Universidade Federal de Santa Maria, Avenida Roraima, 1000, Camobi, Santa Maria-RS 97105-900, Brazil
| | - Luana Floriano
- Departamento de Química, Universidade Federal de Santa Maria, Avenida Roraima, 1000, Camobi, Santa Maria-RS 97105-900, Brazil
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Isaia F, Aragoni MC, Arca M, Caltagirone C, Garau A, Jones PG, Lippolis V, Montis R. Reactivity of the drug methimazole and its iodine adduct with elemental zinc. CrystEngComm 2014. [DOI: 10.1039/c3ce42601g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Mononuclear cycloplatinated complexes derived from 2-tolylpyridine with N-donor ligands: Reactivity and structural characterization. Polyhedron 2012. [DOI: 10.1016/j.poly.2011.11.055] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Ozerianskyi A, Švec P, Vaňkátová H, Vejsová M, Česlová L, Padělková Z, Růžička A, Holeček J. S,N-Chelated organotin(IV) compounds containing 6-phenylpyridazine-3-thiolate ligand-structural, antibacterial and antifungal study. Appl Organomet Chem 2011. [DOI: 10.1002/aoc.1823] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Rodríguez A, Sousa-Pedrares A, García-Vázquez JA, Romero J, Sousa A. Synthesis and Structural Characterization of Copper(I), Silver(I) and Gold(I) Complexes with Pyrimidine-2-thionato Ligands and their Adducts with Phosphanes. Eur J Inorg Chem 2011. [DOI: 10.1002/ejic.201100156] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Li HX, Cheng ML, Wang HM, Yang XJ, Ren ZG, Lang JP. Lanthanide(III) 4,6-Dimethylpyrimidine-2-thionate Complexes as Efficient Catalysts for Isocyanate Cyclodimerization. Organometallics 2010. [DOI: 10.1021/om100671s] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hong-Xi Li
- College of Chemistry, Chemical Engineering and Materials Science, Suzhou University, Suzhou 215123, People's Republic of China
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 210032, People's Republic of China
| | - Mei-Ling Cheng
- College of Chemistry, Chemical Engineering and Materials Science, Suzhou University, Suzhou 215123, People's Republic of China
- School of Chemistry and Chemical Engineering, Changzhou University, Changzhou 213164, People's Republic of China
| | - He-Ming Wang
- College of Chemistry, Chemical Engineering and Materials Science, Suzhou University, Suzhou 215123, People's Republic of China
| | - Xiao-Juan Yang
- College of Chemistry, Chemical Engineering and Materials Science, Suzhou University, Suzhou 215123, People's Republic of China
| | - Zhi-Gang Ren
- College of Chemistry, Chemical Engineering and Materials Science, Suzhou University, Suzhou 215123, People's Republic of China
| | - Jian-Ping Lang
- College of Chemistry, Chemical Engineering and Materials Science, Suzhou University, Suzhou 215123, People's Republic of China
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 210032, People's Republic of China
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Lang ES, Stieler R, de Oliveira GM. Synthetic procedures and structural features of new di- and tri-nuclear chelate compounds of Cd(II) with sulfur and nitrogen donor ligands. Polyhedron 2009. [DOI: 10.1016/j.poly.2009.08.018] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Rodríguez A, Sousa-Pedrares A, García-Vázquez JA, Romero J, Sousa A. Electrochemical synthesis and characterization of zinc(II) complexes with pyrimidine-2-thionato ligands and their adducts with N,N donors. Polyhedron 2009. [DOI: 10.1016/j.poly.2009.03.029] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Esparza-Ruiz A, Peña-Hueso A, Ramos-García I, Flores-Parra A, Contreras R. Heptacoordinated diphenyllead; hexa- and pentacoordinated triphenyllead and tin compounds derived from 5H-benzimidazo[1,2-c]quinazoline-6-thione. J Organomet Chem 2008. [DOI: 10.1016/j.jorganchem.2008.05.022] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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