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Ondar EE, Polynski MV, Ananikov VP. Predicting 195 Pt NMR Chemical Shifts in Water-Soluble Inorganic/Organometallic Complexes with a Fast and Simple Protocol Combining Semiempirical Modeling and Machine Learning. Chemphyschem 2023:e202200940. [PMID: 36806426 DOI: 10.1002/cphc.202200940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 02/20/2023] [Accepted: 02/20/2023] [Indexed: 02/23/2023]
Abstract
Water-soluble Pt complexes are the key components in medicinal chemistry and catalysis. The well-known cisplatin family of anticancer drugs and industrial hydrosylilation catalysts are two leading examples. On the molecular level, the activity mechanisms of such complexes mostly involve changes in the Pt coordination sphere. Using 195 Pt NMR spectroscopy for operando monitoring would be a valuable tool for uncovering the activity mechanisms; however, reliable approaches for the rapid correlation of Pt complex structure with 195 Pt chemical shifts are very challenging and not available for everyday research practice. While NMR shielding is a response property, molecular 3D structure determines NMR spectra, as widely known, which allows us to build up 3D structure to 195 Pt chemical shift correlations. Accordingly, we present a new workflow for the determination of lowest-energy configurational/conformational isomers based on the GFN2-xTB semiempirical method and prediction of corresponding chemical shifts with a Machine Learning (ML) model tuned for Pt complexes. The workflow was designed for the prediction of 195 Pt chemical shifts of water-soluble Pt(II) and Pt(IV) anionic, neutral, and cationic complexes with halide, NO2 - , (di)amino, and (di)carboxylate ligands with chemical shift values ranging from -6293 to 7090 ppm. The model offered an accuracy (normalized root-mean-square deviation/RMSD) of 1.08 %/145.02 ppm on the held-out test set.
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Affiliation(s)
- Evgeniia E Ondar
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
| | - Mikhail V Polynski
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia.,Scientific Technological Center of Organic and Pharmaceutical Chemistry, National Academy of Sciences, 26 Azatutyan Ave, 0014, Yerevan, Armenia
| | - Valentine P Ananikov
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect 47, Moscow, 119991, Russia
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2
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Tomioka N, Misawa-Suzuki T, Nagao H. N N bond cleavage upon reduction and protonation of phenylazophenylate coordinated to ruthenium complex. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115193] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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3
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Synthesis and reactivity of a cationic palladium complex as possible intermediate in a Suzuki-Miyaura cross-coupling reaction. J Fluor Chem 2017. [DOI: 10.1016/j.jfluchem.2017.08.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Kohlmann J, Braun T, Laubenstein R, Herrmann R. Suzuki-Miyaura Cross-Coupling Reactions of Highly Fluorinated Arylboronic Esters: Catalytic Studies and Stoichiometric Model Reactions on the Transmetallation Step. Chemistry 2017; 23:12218-12232. [DOI: 10.1002/chem.201700549] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Indexed: 12/23/2022]
Affiliation(s)
- Johannes Kohlmann
- Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Thomas Braun
- Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Reik Laubenstein
- Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Germany
| | - Roy Herrmann
- Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Germany
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5
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Jadhav S, Jagdale A, Kamble S, Kumbhar A, Salunkhe R. Palladium nanoparticles supported on a titanium dioxide cellulose composite (PdNPs@TiO2–Cell) for ligand-free carbon–carbon cross coupling reactions. RSC Adv 2016. [DOI: 10.1039/c5ra20680d] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Well-dispersed non-spherical PdNPs with a diameter of 39–45 nm supported on a TiO2–cellulose composite can be synthesized by a simple route, and used for many coupling reactions under mild reaction conditions.
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Affiliation(s)
- Sanjay Jadhav
- Department of Chemistry
- Shivaji University
- Kolhapur
- India
| | - Ashutosh Jagdale
- Department of Chemistry
- Padmabhushan Dr Vasantraodada Patil College
- Tasgaon
- India
| | - Santosh Kamble
- Department of Chemistry
- Yashvantrao Chavan Institute of Science
- Satara
- India
| | - Arjun Kumbhar
- Department of Chemistry
- Padmabhushan Dr Vasantraodada Patil College
- Tasgaon
- India
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6
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Limberger J, Leal BC, Monteiro AL, Dupont J. Charge-tagged ligands: useful tools for immobilising complexes and detecting reaction species during catalysis. Chem Sci 2014; 6:77-94. [PMID: 28553458 PMCID: PMC5424467 DOI: 10.1039/c4sc02151g] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Accepted: 08/06/2014] [Indexed: 11/21/2022] Open
Abstract
A critical overview is presented on the use of charged tagged ligands (CTLs) as immobilising agents in organometallic catalysis and as probes for studying mechanisms through electrospray ionisation mass spectrometry (ESI-MS) based on the most recent literature.
In recent years, charge-tagged ligands (CTLs) have become valuable tools in organometallic catalysis. Insertion of an ionic side chain into the molecular skeleton of a known ligand has become a useful protocol for anchoring ligands, and consequently catalysts, in polar and ionic liquid phases. In addition, the insertion of a cationic moiety into a ligand is a powerful tool that can be used to detect reaction intermediates in organometallic catalysis through electrospray ionisation mass spectrometry (ESI-MS) experiments. The insertion of an ionic tag ensures the charge in the intermediates independently of the ESI-MS. For this reason, these ligands have been used as ionic probes in mechanistic studies for several catalytic reactions. Here, we summarise selected examples on the use of CTLs as immobilising agents in organometallic catalysis and as probes for studying mechanisms through ESI-MS.
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Affiliation(s)
- Jones Limberger
- Laboratory of Molecular Catalysis , Institute of Chemistry - UFRGS , Av. Bento Gonçalves 9500, 91501-970, CP 15003 , Porto Alegre , RS , Brazil
| | - Bárbara C Leal
- Laboratory of Molecular Catalysis , Institute of Chemistry - UFRGS , Av. Bento Gonçalves 9500, 91501-970, CP 15003 , Porto Alegre , RS , Brazil
| | - Adriano L Monteiro
- Laboratory of Molecular Catalysis , Institute of Chemistry - UFRGS , Av. Bento Gonçalves 9500, 91501-970, CP 15003 , Porto Alegre , RS , Brazil
| | - Jairton Dupont
- Laboratory of Molecular Catalysis , Institute of Chemistry - UFRGS , Av. Bento Gonçalves 9500, 91501-970, CP 15003 , Porto Alegre , RS , Brazil .,School of Chemistry , University of Nottingham , University Park , Nottingham , NG7 2RD , UK .
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7
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Zhang W, Li K, Zhao B. Diaryl Sulfones Synthesis with Aryltrifluoroborates and Aryl Sulfinic Salts under Mild Conditions. JOURNAL OF CHEMICAL RESEARCH 2014. [DOI: 10.3184/174751914x13946468223913] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
CuI-catalysed cross-coupling reactions of various aryltrifluoroborates with aryl sulfinic salts have been achieved in good yields. A new efficient method is described for the conversion of potassium aryltrifluoroborates into diaryl sulfones. The reported reactions are tolerant to common functional groups regardless of whether they are electron-rich or electron-deficient, making this transformation an attractive alternative to traditional approaches.
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Affiliation(s)
- Wei Zhang
- Department of Chemistry and Chemical Engineering; Xinxiang University; Xinxiang 453003, P.R. China
| | - Ke Li
- Jiaozuo City Environmental Protection Bureau, Jiaozuo, Henan Province, 453003, P.R. China
| | - Baoli Zhao
- Institute of Applied Chemistry and Department of Chemistry, Shaoxing University, Shaoxing, Zhejiang Province 312000, P.R. China
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8
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Gas-phase studies of copper catalyzed aerobic cross coupling of thiol esters and arylboronic acids. J PHYS ORG CHEM 2013. [DOI: 10.1002/poc.3262] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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9
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Cheng K, Zhao B, Hu S, Zhang XM, Qi C. Pd-catalyzed cross-coupling reactions of arenediazonium salts with arylsilanes and aryltrifluoroborates in water. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.09.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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10
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Ma XT, Tian SK. Palladium-Catalyzed Regioselective Halogenation of Aromatic Azo Compounds. Adv Synth Catal 2013. [DOI: 10.1002/adsc.201200902] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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11
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Szulmanowicz MS, Gniewek A, Gil W, Trzeciak AM. Palladium(II) Complexes with Small N-Heterocyclic Carbene Ligands as Highly Active Catalysts for the Suzuki-Miyaura Cross-Coupling Reaction. ChemCatChem 2012. [DOI: 10.1002/cctc.201200428] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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12
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He X, Zhang S, Guo Y, Wang H, Lin G. Mechanistic Investigations of a Palladium-Diene Catalyzed Suzuki–Miyaura Cross-Coupling Reaction. Organometallics 2012. [DOI: 10.1021/om300115x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Xiaoshuang He
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Shusheng Zhang
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Yinlong Guo
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Haoyang Wang
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
| | - Guoqiang Lin
- Shanghai Institute of Organic Chemistry, Chinese Academy
of Sciences, 345 Lingling Road, Shanghai 200032,
People's Republic of China
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Schade MA, Fleckenstein JE, Knochel P, Koszinowski K. Charged tags as probes for analyzing organometallic intermediates and monitoring cross-coupling reactions by electrospray-ionization mass spectrometry. J Org Chem 2011; 75:6848-57. [PMID: 20836538 DOI: 10.1021/jo101337a] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Organic iodides bearing a cationic quaternary ammonium group at a remote position react with zerovalent Pd complexes, Zn, or In leading to a C-I bond insertion. The resulting charge-tagged organometallics can be detected by electrospray-ionization mass spectrometry, which provides detailed information on their stoichiometry, oxidation state, and coordination sphere. The properties of the observed organopalladium and -zinc intermediates largely agree with previous findings, whereas the organoindium species show a surprisingly high tendency to form ate complexes. Magnesium also undergoes insertion into the C-I bond of the charge-tagged organic iodides, but instead of the expected organomagnesium intermediates only the corresponding hydrolysis products could be detected in the diluted solutions. Electrospray-ionization mass spectrometry can also be used to study the reactivity of the charge-tagged species, as was demonstrated for a Pd-catalyzed Negishi cross-coupling reaction. The presented approach permits a straightforward identification of the rate-limiting step and the determination of the corresponding second-order rate constant.
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Affiliation(s)
- Matthias A Schade
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
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Grisorio R, Suranna G, Mastrorilli P. Chain-Growth Versus Step-Growth Mechanisms for the Suzuki-Heck Polymerisation of Fluorenyldibromides with Potassium Vinyl Trifluoroborate. Chemistry 2010; 16:8054-61. [DOI: 10.1002/chem.201000110] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Thiery E, Aouf C, Belloy J, Harakat D, Le Bras J, Muzart J. Palladium-Catalyzed Allylic Acyloxylation of Terminal Alkenes in the Presence of a Base. J Org Chem 2010; 75:1771-4. [DOI: 10.1021/jo902587u] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Emilie Thiery
- Institut de Chimie Moléculaire de Reims, UMR 6229 CNRS-Université de Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Chahinez Aouf
- Institut de Chimie Moléculaire de Reims, UMR 6229 CNRS-Université de Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Julien Belloy
- Institut de Chimie Moléculaire de Reims, UMR 6229 CNRS-Université de Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Dominique Harakat
- Institut de Chimie Moléculaire de Reims, UMR 6229 CNRS-Université de Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Jean Le Bras
- Institut de Chimie Moléculaire de Reims, UMR 6229 CNRS-Université de Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Jacques Muzart
- Institut de Chimie Moléculaire de Reims, UMR 6229 CNRS-Université de Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
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16
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Chisholm DM, Oliver AG, McIndoe JS. Mono-alkylated bisphosphines as dopants for ESI-MS analysis of catalytic reactions. Dalton Trans 2010:364-73. [DOI: 10.1039/b913225b] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Thiery E, Harakat D, Le Bras J, Muzart J. Palladium-Catalyzed Oxidative Coupling of 2-Alkylfurans with Olefins through C−H Activation: Synthesis of Difurylalkanes. Organometallics 2008. [DOI: 10.1021/om8004433] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Emilie Thiery
- Institut de Chimie Moléculaire de Reims, UMR 6229, CNRS-Université Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Dominique Harakat
- Institut de Chimie Moléculaire de Reims, UMR 6229, CNRS-Université Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Jean Le Bras
- Institut de Chimie Moléculaire de Reims, UMR 6229, CNRS-Université Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
| | - Jacques Muzart
- Institut de Chimie Moléculaire de Reims, UMR 6229, CNRS-Université Reims Champagne-Ardenne, UFR des Sciences exactes et naturelles, BP 1039, 51687 REIMS Cedex 2, France
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18
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Paolillo R, Gallo V, Mastrorilli P, Nobile CF, Rosé J, Braunstein P. Tri- and Tetranuclear Homo- and Heterometallic Clusters as Precatalysts for the Pauson−Khand Reaction. Organometallics 2008. [DOI: 10.1021/om7010112] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rossella Paolillo
- Department of Water Engineering and of Chemistry, Polytechnic of Bari, Via Orabona, 4 I-70125 Bari, Italy, and Laboratoire de Chimie de Coordination, Institut de Chimie (UMR 7177 CNRS), Université Louis Pasteur, 4 Rue Blaise Pascal, F-67070 Strasbourg, France
| | - Vito Gallo
- Department of Water Engineering and of Chemistry, Polytechnic of Bari, Via Orabona, 4 I-70125 Bari, Italy, and Laboratoire de Chimie de Coordination, Institut de Chimie (UMR 7177 CNRS), Université Louis Pasteur, 4 Rue Blaise Pascal, F-67070 Strasbourg, France
| | - Piero Mastrorilli
- Department of Water Engineering and of Chemistry, Polytechnic of Bari, Via Orabona, 4 I-70125 Bari, Italy, and Laboratoire de Chimie de Coordination, Institut de Chimie (UMR 7177 CNRS), Université Louis Pasteur, 4 Rue Blaise Pascal, F-67070 Strasbourg, France
| | - Cosimo F. Nobile
- Department of Water Engineering and of Chemistry, Polytechnic of Bari, Via Orabona, 4 I-70125 Bari, Italy, and Laboratoire de Chimie de Coordination, Institut de Chimie (UMR 7177 CNRS), Université Louis Pasteur, 4 Rue Blaise Pascal, F-67070 Strasbourg, France
| | - Jacky Rosé
- Department of Water Engineering and of Chemistry, Polytechnic of Bari, Via Orabona, 4 I-70125 Bari, Italy, and Laboratoire de Chimie de Coordination, Institut de Chimie (UMR 7177 CNRS), Université Louis Pasteur, 4 Rue Blaise Pascal, F-67070 Strasbourg, France
| | - Pierre Braunstein
- Department of Water Engineering and of Chemistry, Polytechnic of Bari, Via Orabona, 4 I-70125 Bari, Italy, and Laboratoire de Chimie de Coordination, Institut de Chimie (UMR 7177 CNRS), Université Louis Pasteur, 4 Rue Blaise Pascal, F-67070 Strasbourg, France
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19
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Chisholm DM, Scott McIndoe J. Charged ligands for catalyst immobilisation and analysis. Dalton Trans 2008:3933-45. [DOI: 10.1039/b800371h] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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