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Tapala KC, Ndlangamandla NG, Ngoepe MP, Clayton HS. Molecular Structure, Spectroscopic, Frontier Molecular Orbital Analysis, Molecular Docking Studies, and In Vitro DNA-Binding Studies of Osmium(II)-Cymene Complexes with Aryl Phosphine and Aryl Phosphonium Assemblies. Bioinorg Chem Appl 2024; 2024:6697523. [PMID: 38840845 PMCID: PMC11152764 DOI: 10.1155/2024/6697523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 10/25/2023] [Accepted: 04/23/2024] [Indexed: 06/07/2024] Open
Abstract
X-ray crystallography, spectroscopy, computational methods, molecular docking studies, and in vitro DNA-binding studies have been useful in the investigations of intermolecular and intramolecular interactions of osmium-cymene oxalato complexes with aryl phosphine and aryl phosphonium groups in both primary and secondary coordination spheres, respectively. Molecular structures of the novel complexes PPh4[Os(η6-p-cymene)Br(κ2-O,O'-C2O4)] (1) and [Os(η6-p-cymene) (κ2-O,O'-C2O4)PPh3] (2) were resolved by single-crystal X-ray diffraction (XRD). Primary and secondary coordination sphere contacts were investigated using Hirshfeld surface analysis which was supported by molecular docking (MD) studies. The MD data obtained predicted significant differences in binding energy across three receptors for the two osmium complexes. An in vitro DNA-binding study was accomplished using UV-Vis spectroscopy which showed that both 1 and 2 bond with DNA through an intercalation approach. The optimized molecular geometry, frontier molecular orbital (EHOMO and ELUMO) energies, global electrophilicity index (ω), chemical hardness (η), chemical potential (µ), and the energy band gap (EHOMO-ELUMO) were calculated utilizing density functional theory (DFT) methods. Computed structural parameters (bond lengths and angles) support the experimental single-crystal XRD data.
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Affiliation(s)
- Kgaugelo C. Tapala
- Chemistry Department, University of South Africa, Unisa Science Campus, Johannesburg 1709, South Africa
| | - Nqobile G. Ndlangamandla
- Chemistry Department, University of South Africa, Unisa Science Campus, Johannesburg 1709, South Africa
| | - Mpho P. Ngoepe
- Chemistry Department, University of South Africa, Unisa Science Campus, Johannesburg 1709, South Africa
| | - Hadley S. Clayton
- Chemistry Department, University of South Africa, Unisa Science Campus, Johannesburg 1709, South Africa
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Zhang Y, Karatchevtseva I, Liu M, Tao Z, Wei G. Thorium(IV) and uranium(IV) complexes with cucurbit[8]uril: Supramolecular structures via direct coordination and second-shell interactions. Polyhedron 2020. [DOI: 10.1016/j.poly.2020.114826] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Murray AV, Vanagas NA, Wacker JN, Bertke JA, Knope KE. From Isolated Molecular Complexes to Extended Networks: Synthesis and Characterization of Thorium Furanmono‐ and Dicarboxylates. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000467] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Aphra V. Murray
- Department of Chemistry Georgetown University 37 and O Streets NW Washington D.C. 20057 USA
| | - Nicole A. Vanagas
- Department of Chemistry Georgetown University 37 and O Streets NW Washington D.C. 20057 USA
| | - Jennifer N. Wacker
- Department of Chemistry Georgetown University 37 and O Streets NW Washington D.C. 20057 USA
| | - Jeffery A. Bertke
- Department of Chemistry Georgetown University 37 and O Streets NW Washington D.C. 20057 USA
| | - Karah E. Knope
- Department of Chemistry Georgetown University 37 and O Streets NW Washington D.C. 20057 USA
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Farger P, Haidon B, Roussel P, Arab-Chapelet B, Rivenet M. Crystal Growth in the Thorium-TEDGA-Oxalate-Nitrate System: Description and Comparison of the Main Structural Features. Inorg Chem 2019; 58:1267-1277. [DOI: 10.1021/acs.inorgchem.8b02744] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Pierre Farger
- Université Lille, CNRS, Centrale Lille, ENSCL, Université d’Artois, UMR 8181 - UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
| | - Blaise Haidon
- Université Lille, CNRS, Centrale Lille, ENSCL, Université d’Artois, UMR 8181 - UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
- CEA, Nuclear Energy Division, Research Department on Mining and Fuel Recycling Process, SFMA/LPCA, Marcoule, F-30207 Bagnols sur Cèze, France
| | - Pascal Roussel
- Université Lille, CNRS, Centrale Lille, ENSCL, Université d’Artois, UMR 8181 - UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
| | - Bénédicte Arab-Chapelet
- CEA, Nuclear Energy Division, Research Department on Mining and Fuel Recycling Process, SFMA/LPCA, Marcoule, F-30207 Bagnols sur Cèze, France
| | - Murielle Rivenet
- Université Lille, CNRS, Centrale Lille, ENSCL, Université d’Artois, UMR 8181 - UCCS - Unité de Catalyse et de Chimie du Solide, F-59000 Lille, France
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Aragão D, Aishima J, Cherukuvada H, Clarken R, Clift M, Cowieson NP, Ericsson DJ, Gee CL, Macedo S, Mudie N, Panjikar S, Price JR, Riboldi-Tunnicliffe A, Rostan R, Williamson R, Caradoc-Davies TT. MX2: a high-flux undulator microfocus beamline serving both the chemical and macromolecular crystallography communities at the Australian Synchrotron. JOURNAL OF SYNCHROTRON RADIATION 2018; 25:885-891. [PMID: 29714201 PMCID: PMC5929359 DOI: 10.1107/s1600577518003120] [Citation(s) in RCA: 282] [Impact Index Per Article: 47.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 02/22/2018] [Indexed: 05/12/2023]
Abstract
MX2 is an in-vacuum undulator-based crystallography beamline at the 3 GeV Australian Synchrotron. The beamline delivers hard X-rays in the energy range 4.8-21 keV to a focal spot of 22 × 12 µm FWHM (H × V). At 13 keV the flux at the sample is 3.4 × 1012 photons s-1. The beamline endstation allows robotic handling of cryogenic samples via an updated SSRL SAM robot. This beamline is ideal for weakly diffracting hard-to-crystallize proteins, virus particles, protein assemblies and nucleic acids as well as smaller molecules such as inorganic catalysts and organic drug molecules. The beamline is now mature and has enjoyed a full user program for the last nine years. This paper describes the beamline status, plans for its future and some recent scientific highlights.
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Affiliation(s)
- David Aragão
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Jun Aishima
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
- ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton Campus, Clayton, Victoria 3168, Australia
| | - Hima Cherukuvada
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Robert Clarken
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Mark Clift
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Nathan Philip Cowieson
- B21 SAXS, Diamond Light Source Ltd, Hartwell Science and Innovation Campus, Didcot OX11 0DE, England
| | | | - Christine L. Gee
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, USA
- California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, California, USA
- Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, California, USA
| | - Sofia Macedo
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Nathan Mudie
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Santosh Panjikar
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Jason Roy Price
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | | | - Robert Rostan
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
| | - Rachel Williamson
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia
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Zhang Y, Karatchevtseva I, Kong L, Price JR, Scales N, Deen S, Zheng R. Hydrothermal synthesis, structures and magnetic properties of two new holmium(III) oxalato complexes. J COORD CHEM 2017. [DOI: 10.1080/00958972.2017.1320709] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Yingjie Zhang
- Nuclear Fuel Cycle Research Theme, Australian Nuclear Science and Technology Organisation, Kirrawee, Australia
| | - Inna Karatchevtseva
- Nuclear Fuel Cycle Research Theme, Australian Nuclear Science and Technology Organisation, Kirrawee, Australia
| | - Linggen Kong
- Nuclear Fuel Cycle Research Theme, Australian Nuclear Science and Technology Organisation, Kirrawee, Australia
| | | | - Nicholas Scales
- Nuclear Fuel Cycle Research Theme, Australian Nuclear Science and Technology Organisation, Kirrawee, Australia
| | - Stephen Deen
- Nuclear Fuel Cycle Research Theme, Australian Nuclear Science and Technology Organisation, Kirrawee, Australia
| | - Rongkun Zheng
- School of Physics and Advanced Materials, University of Sydney, Ultimo, Australia
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Shepherd ND, Zhang Y, Karatchevtseva I, Price JR, Kong L, Scales N, Lumpkin GR. One-dimensional uranium(VI) coordination polymers with pyridinecarboxylate ligands. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.04.028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Solvothermal synthesis of uranium(VI) phases with aromatic carboxylate ligands: A dinuclear complex with 4-hydroxybenzoic acid and a 3D framework with terephthalic acid. J SOLID STATE CHEM 2016. [DOI: 10.1016/j.jssc.2015.11.031] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Zhang Y, Clegg JK, Lu K, Lumpkin GR, Tran TT, Aharonovich I, Scales N, Li F. Uranium(VI) hybrid materials with [(UO2)3(µ3-O)(µ2-OH)3]+as the sub-building unit via uranyl-cation interactions. ChemistrySelect 2016. [DOI: 10.1002/slct.201500043] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Yingjie Zhang
- Australian Nuclear Science and Technology Organisation; Locked Bag 2001 Kirrawee DC NSW 2232 Australia
| | - Jack K. Clegg
- School of Chemistry and Molecular Biosciences; The University of Queensland; Brisbane, St Lucia QLD 4072 Australia
| | - Kim Lu
- Australian Nuclear Science and Technology Organisation; Locked Bag 2001 Kirrawee DC NSW 2232 Australia
| | - Gregory R. Lumpkin
- Australian Nuclear Science and Technology Organisation; Locked Bag 2001 Kirrawee DC NSW 2232 Australia
| | - Toan Trong Tran
- School of Physics and Advanced Materials; University of Technology Sydney; Ultimo NSW 2007 Australia
| | - Igor Aharonovich
- School of Physics and Advanced Materials; University of Technology Sydney; Ultimo NSW 2007 Australia
| | - Nicholas Scales
- Australian Nuclear Science and Technology Organisation; Locked Bag 2001 Kirrawee DC NSW 2232 Australia
| | - Feng Li
- School of Science and Health; Western Sydney University; Locked Bag 1797 Penrith NSW 2751 Australia
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Zhang Y, Fanna DJ, Shepherd ND, Karatchevtseva I, Lu K, Kong L, Price JR. Dioxo-vanadium(v), oxo-rhenium(v) and dioxo-uranium(vi) complexes with a tridentate Schiff base ligand. RSC Adv 2016. [DOI: 10.1039/c6ra12872f] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
The complexation of a tridentate Schiff base ligand with three oxo-metal ions lead to the formations of four new complexes.
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Affiliation(s)
- Yingjie Zhang
- Australian Nuclear Science and Technology Organisation
- Kirrawee DC
- Australia
| | - Daniel J. Fanna
- School of Science and Health
- Western Sydney University
- Penrith
- Australia
| | - Nicholas D. Shepherd
- Australian Nuclear Science and Technology Organisation
- Kirrawee DC
- Australia
- School of Science and Health
- Western Sydney University
| | | | - Kim Lu
- Australian Nuclear Science and Technology Organisation
- Kirrawee DC
- Australia
| | - Linggen Kong
- Australian Nuclear Science and Technology Organisation
- Kirrawee DC
- Australia
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Scales N, Zhang Y, Bhadbhade M, Karatchevtseva I, Kong L, Lumpkin GR, Li F. Neodymium coordination polymers with propionate, succinate and mixed succinate–oxalate ligands: Synthesis, structures and spectroscopic characterization. Polyhedron 2015. [DOI: 10.1016/j.poly.2015.07.065] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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12
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Falaise C, Charles JS, Volkringer C, Loiseau T. Thorium Terephthalates Coordination Polymers Synthesized in Solvothermal DMF/H2O System. Inorg Chem 2015; 54:2235-42. [DOI: 10.1021/ic502725y] [Citation(s) in RCA: 108] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Clément Falaise
- Unité
de Catalyse et Chimie du Solide (UCCS) − UMR CNRS 8181, Université de Lille, USTL-ENSCL, Bat C7, BP 90108, 59652 Villeneuve d’Ascq, France
| | - Jean-Sébastien Charles
- Unité
de Catalyse et Chimie du Solide (UCCS) − UMR CNRS 8181, Université de Lille, USTL-ENSCL, Bat C7, BP 90108, 59652 Villeneuve d’Ascq, France
| | - Christophe Volkringer
- Unité
de Catalyse et Chimie du Solide (UCCS) − UMR CNRS 8181, Université de Lille, USTL-ENSCL, Bat C7, BP 90108, 59652 Villeneuve d’Ascq, France
| | - Thierry Loiseau
- Unité
de Catalyse et Chimie du Solide (UCCS) − UMR CNRS 8181, Université de Lille, USTL-ENSCL, Bat C7, BP 90108, 59652 Villeneuve d’Ascq, France
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13
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Synthesis, spectroscopic characterization and crystal structures of thorium(IV) mononuclear lactato and hexanuclear formato complexes. Polyhedron 2015. [DOI: 10.1016/j.poly.2014.12.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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