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Chiba Y, Tanabe T, Koizumi K, Toyoda R, Iguchi H, Takaishi S, Sakamoto R. Single-Crystal Structures of Benzenehexathiol and Its Disulfide Forms. Inorg Chem 2023; 62:11731-11736. [PMID: 37436954 DOI: 10.1021/acs.inorgchem.3c01734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/14/2023]
Abstract
Oligothiols are useful as building blocks in the construction of disulfide-based macrocycles and polymers or as ligands for coordination polymers. Above all, benzenehexathiol (BHT) is a particularly important molecule, as it is used to construct conductive two-dimensional MOFs. Despite the desire to clarify its structure and isolate it to high purity, the chemical instability of BHT has hampered single-crystal X-ray structure analysis of intact BHT. In addition, the synthesis of discrete disulfide molecules of BHT has not been reported. Here, we succeed in obtaining the single crystals of intact BHT, which is analyzed by single crystal X-ray structure analysis. Furthermore, the structures of a group of molecules with intermolecular disulfide bonds (BHT·4im and BHT2·2TBA, im = imidazole, TBA = tetrabutylammonium cation) obtained by processing BHT in the presence of bases are determined.
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Affiliation(s)
- Yuta Chiba
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Sendai, Miyagi 980-8578, Japan
| | - Tappei Tanabe
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Sendai, Miyagi 980-8578, Japan
| | - Kazuma Koizumi
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Sendai, Miyagi 980-8578, Japan
| | - Ryojun Toyoda
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Sendai, Miyagi 980-8578, Japan
| | - Hiroaki Iguchi
- Department of Materials Chemistry, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan
| | - Shinya Takaishi
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Sendai, Miyagi 980-8578, Japan
| | - Ryota Sakamoto
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aza-Aoba, Aramaki, Sendai, Miyagi 980-8578, Japan
- Division for the Establishment of Frontier Sciences of Organization for Advanced Studies at Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
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2
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Watanabe LK, Wrixon JD, Rawson JM. The chemistry of dithietes, 1,2,5,6-tetrathiocins and higher oligomers. Dalton Trans 2021; 50:13620-13633. [PMID: 34585192 DOI: 10.1039/d1dt02760c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis and reactivity patterns of the strained dithiete ring are compared with their dimeric tetrathiocin counterparts and higher oligomers, highlighting: (i) their cycloaddition chemistry with organic dienophiles as a route to sulfur-containing heterocycles; (ii) their oxidative addition chemistry to low valent transition metal complexes to generate transition metal dithiolate complexes and; (iii) the base-catalysed isomerizations between different dithiete oligomers.
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Affiliation(s)
- Lara K Watanabe
- Department of Chemistry and Biochemistry, the University of Windsor, 401 Sunset Avenue, Windsor, ON, Canada N9B 3P4.
| | - Justin D Wrixon
- Department of Chemistry and Biochemistry, the University of Windsor, 401 Sunset Avenue, Windsor, ON, Canada N9B 3P4.
| | - Jeremy M Rawson
- Department of Chemistry and Biochemistry, the University of Windsor, 401 Sunset Avenue, Windsor, ON, Canada N9B 3P4.
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3
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Ahmadi M, Fischer C, Ghosh AC, Schulzke C. An Asymmetrically Substituted Aliphatic Bis-Dithiolene Mono-Oxido Molybdenum(IV) Complex With Ester and Alcohol Functions as Structural and Functional Active Site Model of Molybdoenzymes. Front Chem 2019; 7:486. [PMID: 31355183 PMCID: PMC6637267 DOI: 10.3389/fchem.2019.00486] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 06/24/2019] [Indexed: 01/08/2023] Open
Abstract
A MoIV mono-oxido bis-dithiolene complex, [MoO(mohdt)2]2− (mohdt = 1-methoxy-1-oxo-4-hydroxy-but-2-ene-2,3-bis-thiolate) was synthesized as a structural and functional model for molybdenum oxidoreductase enzymes of the DMSO reductase family. It was comprehensively characterized by inter alia various spectroscopic methods and employed as an oxygen atom transfer (OAT) catalyst. The ligand precursor of mohdt was readily prepared by a three-step synthesis starting from dimethyl-but-2-ynedioate. Crystallographic and 13C-NMR data support the rationale that by asymmetric substitution the electronic structure of the ene-dithio moiety can be fine-tuned. The MoIVO bis-dithiolene complex was obtained by in situ reaction of the de-protected ligand with the metal precursor complex trans-[MoO2(CN)4]4−. The catalytic oxygen atom transfer mediated by the complex was investigated by the model OAT reaction from DMSO to triphenylphosphine with the substrate transformation being monitored by 31P NMR spectroscopy. [MoO(mohdt)2]2− was found to be catalytically active reaching 93% conversion, albeit with a rather low reaction rate (reaction time 56 h). The observed overall catalytic activity is comparable to those of related complexes with aromatic dithiolene ligands despite the novel ligand being aliphatic in nature and originally perceived to perform more swiftly. The respective results are rationalized with respect to a potential intermolecular interaction between the hydroxyl and ester functions together with the electron-withdrawing functional groups of the dithiolene ligands of the molybdenum mono-oxido complex and equilibrium between the active monomeric MoIVO and MoVIO2 and the unreactive dimeric Mo2VO3 species.
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Affiliation(s)
- Mohsen Ahmadi
- Institut für Biochemie, Universität Greifswald, Greifswald, Germany
| | | | - Ashta C Ghosh
- Departement de Chimie Moléculaire, Université Grenoble Alpes, UMR CNRS 5250, Grenoble, France
| | - Carola Schulzke
- Institut für Biochemie, Universität Greifswald, Greifswald, Germany
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4
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Paudel J, Pokhrel A, Kirk ML, Li F. Remote Charge Effects on the Oxygen-Atom-Transfer Reactivity and Their Relationship to Molybdenum Enzymes. Inorg Chem 2019; 58:2054-2068. [PMID: 30673233 DOI: 10.1021/acs.inorgchem.8b03093] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report the syntheses, crystal structures, and characterization of the novel cis-dioxomolybdenum(VI) complexes [Tpm*MoVIO2Cl](MoO2Cl3) (1) and [Tpm*MoVIO2Cl](ClO4) (2), which are supported by the charge-neutral tris(3,5-dimethyl-1-pyrazolyl)methane (Tpm*) ligand. A comparison between isostructural [Tpm*MoVIO2Cl]+ and Tp*MoVIO2Cl [Tp* = hydrotris(3,5-dimethyl-1-pyrazolyl)borate] reveals the effects of one unit of overall charge difference on their spectroscopic and electrochemical properties, geometric and electronic structures, and O-atom-transfer (OAT) reactivities, providing new insight into pyranopterin molybdoenzyme OAT reactivity. Computational studies of these molecules indicate that the delocalized positive charge lowers the lowest unoccupied molecular orbital (LUMO) energy of cationic [Tpm*MoO2Cl]+ relative to Tp*MoO2Cl. Despite their virtually identical geometric structures revealed by crystal structures, the MoVI/MoV redox potential of 2 is increased by 350 mV relative to that of Tp*MoVIO2Cl. This LUMO stabilization also contributes to an increased effective electrophilicity of [Tpm*MoO2Cl]+ relative to that of Tp*MoO2Cl, resulting in a more favorable resonant interaction between the molydenum complex LUMO and the highest occupied molecular orbital (HOMO) of the PPh3 substrate. This leads to a greater thermodynamic driving force, an earlier transition state, and a lowered activation barrier for the orbitally controlled first step of the OAT reaction in the Tpm* system relative to the Tp* system. An Eyring plot analysis shows that this initial step yields an O≡MoIV-OPPh3 intermediate via an associative transition state, and the reaction is ∼500-fold faster for 2 than for Tp*MoO2Cl. The second step of the OAT reaction entails solvolysis of the O≡MoIV-OPPh3 intermediate to afford the solvent-substituted MoIV product and is 750-fold faster for the Tpm* system at -15 °C compared to the Tp* system. The observed rate enhancement for the second step is ascribed to a switch of the reaction mechanism from a dissociative pathway for the Tp* system to an alternative associative pathway for the Tpm* system. This is due to a more Lewis acidic MoIV center in the Tpm* system.
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Affiliation(s)
- Jaya Paudel
- Department of Chemistry and Biochemistry , New Mexico State University , Las Cruces , New Mexico 88003 , United States
| | - Amrit Pokhrel
- Department of Chemistry and Chemical Biology , The University of New Mexico , Albuquerque , New Mexico 87131 , United States
| | - Martin L Kirk
- Department of Chemistry and Chemical Biology , The University of New Mexico , Albuquerque , New Mexico 87131 , United States
| | - Feifei Li
- Department of Chemistry and Biochemistry , New Mexico State University , Las Cruces , New Mexico 88003 , United States
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Acid-facilitated product release from a Mo(IV) center: relevance to oxygen atom transfer reactivity of molybdenum oxotransferases. J Biol Inorg Chem 2017; 23:193-207. [PMID: 29177705 DOI: 10.1007/s00775-017-1518-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 11/10/2017] [Indexed: 01/27/2023]
Abstract
We report that pyridinium ions (HPyr+) accelerate the conversion of [Tp*MoIVOCl(OPMe3)] (1) to [Tp*MoIVOCl(NCCH3)] (2) by 103-fold, affording 2 in near-quantitative yield; Tp* = hydrotris(3,5-dimethyl-1-pyrazolyl)borate. This novel reactivity and the mechanism of this reaction were investigated in detail. The formation of 2 followed pseudo-first-order kinetics, with the observed pseudo-first-order rate constant (k obs) linearly correlated with [HPyr+]. An Eyring plot revealed that this HPyr+-facilitated reaction has a small positive value of ∆S ‡ indicative of a dissociative interchange (Id) mechanism, different from the slower associative interchange (Ia) mechanism in the absence of HPyr+ marked with a negative ∆S ‡. Interestingly, log(k obs) was found to be linearly correlated to the acidity of substituted pyridinium ions. This novel reactivity is further investigated using combined DFT and ab initio coupled cluster methods. Different reaction pathways, including Id, Ia, and possible alternative routes in the absence or presence of HPyr+, were considered, and enthalpy and free energies were calculated for each pathway. Our computational results further underscored that the Id route is energetically favored in the presence of HPyr+, in contrast with the preferred Ia-NNO pathway in the absence of HPyr+. Our computational results also revealed molecular-level details for the HPyr+-facilitated Id route. Specifically, HPyr+ initially becomes hydrogen-bonded to the oxygen atom of the Mo(IV)-OPMe3 moiety, which lowers the activation barrier for the Mo-OPMe3 bond cleavage in a rate-limiting step to dissociate the OPMe3 product. The implications of our results were discussed in the context of molybdoenzymes, particularly the reductive half-reaction of sulfite oxidase.
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6
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Okamura TA, Kaga T, Yamashita S, Furuya R, Onitsuka K. Snapshot of Oxidation of Thiolate by Diiodine: Stabilization of Intermediate by NH···S Hydrogen Bonds. J Org Chem 2017; 82:2187-2192. [PMID: 28145702 DOI: 10.1021/acs.joc.7b00160] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ordinary thiolate (RS-) reacts with diiodine (I2) to afford an intermediate sulfenyl iodide (RSI) by releasing I-; RSI is readily converted to disulfide (RSSR) by a disproportionation reaction. In the case of thiolate Ar1S- containing very bulky acylamino groups forming NH···S hydrogen bonds, the crystal of the intermediate, [Ar1S-I-I]-, was obtained under usual conditions, and the structure was determined by X-ray diffraction analysis. The results show that the intramolecular NH···S hydrogen bonds stabilized the intermediate [Ar1S-I-I]-, consistent with theoretical calculations.
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Affiliation(s)
- Taka-Aki Okamura
- Department of Macromolecular Science, Graduate School of Science, Osaka University , Toyonaka, Osaka 560-0043, Japan
| | - Toshihisa Kaga
- Department of Macromolecular Science, Graduate School of Science, Osaka University , Toyonaka, Osaka 560-0043, Japan
| | - Satoshi Yamashita
- Department of Macromolecular Science, Graduate School of Science, Osaka University , Toyonaka, Osaka 560-0043, Japan
| | - Ryosuke Furuya
- Department of Macromolecular Science, Graduate School of Science, Osaka University , Toyonaka, Osaka 560-0043, Japan
| | - Kiyotaka Onitsuka
- Department of Macromolecular Science, Graduate School of Science, Osaka University , Toyonaka, Osaka 560-0043, Japan
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7
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Ghosh AC, Samuel PP, Schulzke C. Synthesis, characterization and oxygen atom transfer reactivity of a pair of Mo(iv)O- and Mo(vi)O2-enedithiolate complexes – a look at both ends of the catalytic transformation. Dalton Trans 2017; 46:7523-7533. [DOI: 10.1039/c7dt01470h] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel pair of mono-oxo and di-oxo bis-dithiolene molybdenum complexes were synthesized, characterized and catalytically investigated as models for a molybdenum dependent oxidoreductase.
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Affiliation(s)
- Ashta C. Ghosh
- Institute of Condensed Matter and Nanosciences
- Molecules
- Solids and Reactivity (IMCN/MOST)
- Université catholique de Louvain
- 1348 Louvain-la-Neuve
| | - Prinson P. Samuel
- Universität Göttingen
- Institut für Anorganische Chemie
- 37077 Göttingen
- Germany
| | - Carola Schulzke
- Institut für Biochemie
- Ernst-Moritz-Arndt-Universitat Greifswald
- 17487 Greifswald
- Germany
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