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Majerz I, Dziembowska T. What Is the Main Feature Distinguishing the Through-Space Interactions in Cyclophanes from Their Aliphatic Analogues? ACS OMEGA 2020; 5:22314-22324. [PMID: 32923789 PMCID: PMC7482244 DOI: 10.1021/acsomega.0c02671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Accepted: 08/11/2020] [Indexed: 06/11/2023]
Abstract
Classical cyclophanes with two benzene rings have been compared with cyclophanes with one benzene ring replaced with an aliphatic part and aliphatic compounds, which are cyclophane analogues. Analysis of geometry, atomic charges, and aromatic and steric energy and investigation of intramolecular noncovalent interactions and charge mobility show that there is no special feature that distinguishes the classical cyclophanes from aliphatic analogues, so the definition of cyclophanes can be extended to other compounds.
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Affiliation(s)
- Irena Majerz
- Faculty of Pharmacy, Wroclaw Medical University, Borowska 211a, Wroclaw 50-556, Poland
| | - Teresa Dziembowska
- Faculty of Chemical Technology, West Pomeranian
University of Technology, Al. Piastow, Szczecin 70-061, Poland
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Dodziuk H, Demissie TB, Ruud K, Szymański S, Jaźwiński J, Hopf H. Structure and NMR spectra of cyclophanes with unsaturated bridges (cyclophenes). MAGNETIC RESONANCE IN CHEMISTRY : MRC 2012; 50:449-457. [PMID: 22539441 DOI: 10.1002/mrc.3821] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2012] [Revised: 03/24/2012] [Accepted: 03/29/2012] [Indexed: 05/31/2023]
Abstract
The calculated structures of several known and hypothetical cyclophanes with ethylene bridges (cyclophenes) are reported together with experimental and calculated values of their NMR parameters. Of the exchange-correlation functionals and basis sets used in this work, only the ωB97X-D/6-311++G(2d,2p) and ωB97X-D/cc-pVQZ yielded values of the C(sp3)-C(sp3) bond length close to the experimental data, although significant differences still remain. As far as the NMR parameters are concerned, except for close-lying signals, chemical shifts and coupling constants calculated at the ωB97X-D/cc-pVQZ level reproduce in most cases the experimental trends. Contrary to the calculations of geometries, an agreement between the values of the NMR parameters obtained at ωB97X-D/cc-pVQZ level and the experimental ones is the poorest compared with that of the ωB97X-D/6-311++G(2d,2p) one. Taking into account that the results of the different calculations show the same qualitative trends in most cases, we believe that they correctly describe the structure and properties of the hypothetical molecules studied here.
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Affiliation(s)
- Helena Dodziuk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
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Dodziuk H, Szymański S, Jaźwiński J, Marchwiany ME, Hopf H. Structure and Dynamics of [3.3]Paracyclophane As Studied by Nuclear Magnetic Resonance and Density Functional Theory Calculations. J Phys Chem A 2010; 114:10467-73. [DOI: 10.1021/jp106533n] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Helena Dodziuk
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, and Institute of Organic Chemistry, ICM, Warsaw University, Pawinskiego 5a, 02-106 Warsaw, Poland, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
| | - Sławomir Szymański
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, and Institute of Organic Chemistry, ICM, Warsaw University, Pawinskiego 5a, 02-106 Warsaw, Poland, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
| | - Jarosław Jaźwiński
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, and Institute of Organic Chemistry, ICM, Warsaw University, Pawinskiego 5a, 02-106 Warsaw, Poland, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
| | - Maciej E. Marchwiany
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, and Institute of Organic Chemistry, ICM, Warsaw University, Pawinskiego 5a, 02-106 Warsaw, Poland, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
| | - Henning Hopf
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, Institute of Organic Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland, and Institute of Organic Chemistry, ICM, Warsaw University, Pawinskiego 5a, 02-106 Warsaw, Poland, Technical University Braunschweig, Hagenring 30, 38106 Braunschweig, Germany
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Dodziuk H, Ostrowski M, Ruud K, Jaźwiński J, Hopf H, Koźmiński W. Spatial structure and NMR spectra of strained [2.2.2]cyclophanes. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2009; 47:407-414. [PMID: 19170248 DOI: 10.1002/mrc.2402] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The chemical shifts and coupling constants in the NMR spectra of the title compounds are influenced by their strain and the proximity of the aromatic rings. These parameters are studied by density functional theory (DFT) calculations for 1-4 and measured for 3 and 4. We find that, in spite of the strain, the calculations reproduce the experimental values satisfactorily. This finding is of special importance for novel hypothetical molecules like hexahydrosuperphane 5 for their future identification and in searches of hydrocarbons exhibiting unusual NMR parameters. Our results demonstrate the influence of strain on the parameters studied. Most proton and carbon chemical shifts for the molecules under study having nonplanar aromatic rings differ considerably from the corresponding values for the relatively unstrained trimethylbenzenes and ethylbenzene. In addition, the calculated values of the coupling constants through three bonds in most cases do not follow Karplus relation.
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Affiliation(s)
- Helena Dodziuk
- Institute of Physical Chemistry, Polish Academy of Sciences, 01-224 Warsaw, Kasprzaka 44/52, Poland.
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Eichberg M, Houk K, Lehmann J, Leonard P, Märker A, Norton J, Sawicka D, Vollhardt K, Whitener G, Wolff S. The Thermal Retro[2+2+2]cycloaddition of Cyclohexane Activated by Triscyclobutenannelation: Concerted All-Disrotatory versus Stepwise Conrotatory Pathways to Fused [12]Annulenes. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200702474] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Eichberg MJ, Houk KN, Lehmann J, Leonard PW, Märker A, Norton JE, Sawicka D, Vollhardt KPC, Whitener GD, Wolff S. The Thermal Retro[2+2+2]cycloaddition of Cyclohexane Activated by Triscyclobutenannelation: Concerted All-Disrotatory versus Stepwise Conrotatory Pathways to Fused [12]Annulenes. Angew Chem Int Ed Engl 2007; 46:6894-8. [PMID: 17683033 DOI: 10.1002/anie.200702474] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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