1
|
Ghoteimi R, Braka A, Rodriguez C, Cros-Perrial E, Tai Nguyen V, Uttaro JP, Mathé C, Chaloin L, Ménétrier-Caux C, Jordheim LP, Peyrottes S. 4-Substituted-1,2,3-triazolo nucleotide analogues as CD73 inhibitors, their synthesis, in vitro screening, kinetic and in silico studies. Bioorg Chem 2020; 107:104577. [PMID: 33450542 DOI: 10.1016/j.bioorg.2020.104577] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 12/17/2020] [Accepted: 12/17/2020] [Indexed: 12/11/2022]
Abstract
Three series of nucleotide analogues were synthesized and evaluated as potential CD73 inhibitors. Nucleobase replacement consisted in connecting the appropriate aromatic or purine residues through a triazole moiety that is generated from 1,3-dipolar cycloaddition. The first series is related to 4-substituted-1,2,3-triazolo-β-hydroxyphosphonate ribonucleosides. Additional analogues were also obtained, in which the phosphonate group was replaced by a bisphosphonate pattern (P-C-P-C, series 2) or the ribose moiety was removed leading to acyclic derivatives (series 3). The β-hydroxyphosphonylphosphonate ribonucleosides (series 2) were found to be potent inhibitors of CD73 using both purified recombinant protein and cell-based assays. Two compounds (2a and 2b) that contained a bis(trifluoromethyl)phenyl or a naphthyl substituents proved to be the most potent inhibitors, with IC50 values of 4.8 ± 0.8 µM and 0.86 ± 0.2 µM, compared to the standard AOPCP (IC50 value of 3.8 ± 0.9 µM), and were able to reverse the adenosine-mediated immune suppression on human T cells. This series of compounds illustrates a new type of CD73 inhibitors.
Collapse
Affiliation(s)
- Rayane Ghoteimi
- Institut des Biomolécules Max Mousseron (IBMM), Univ. Montpellier, CNRS, ENSCM, 34095 Montpellier, France
| | - Abdennour Braka
- Institut de Recherche en Infectiologie de Montpellier (IRIM), Univ. Montpellier, CNRS, 34293 Montpellier, France
| | - Céline Rodriguez
- Univ. Lyon, Université Claude Bernard Lyon 1, INSERM U1052, CNRS 5286, Centre Léon Bérard, Centre de Recherche en Cancérologie de Lyon, 69008 Lyon, France
| | - Emeline Cros-Perrial
- Univ. Lyon, Université Claude Bernard Lyon 1, INSERM U1052, CNRS 5286, Centre Léon Bérard, Centre de Recherche en Cancérologie de Lyon, 69008 Lyon, France
| | - Van Tai Nguyen
- Institut des Biomolécules Max Mousseron (IBMM), Univ. Montpellier, CNRS, ENSCM, 34095 Montpellier, France
| | - Jean-Pierre Uttaro
- Institut des Biomolécules Max Mousseron (IBMM), Univ. Montpellier, CNRS, ENSCM, 34095 Montpellier, France
| | - Christophe Mathé
- Institut des Biomolécules Max Mousseron (IBMM), Univ. Montpellier, CNRS, ENSCM, 34095 Montpellier, France
| | - Laurent Chaloin
- Institut de Recherche en Infectiologie de Montpellier (IRIM), Univ. Montpellier, CNRS, 34293 Montpellier, France
| | - Christine Ménétrier-Caux
- Univ. Lyon, Université Claude Bernard Lyon 1, INSERM U1052, CNRS 5286, Centre Léon Bérard, Centre de Recherche en Cancérologie de Lyon, 69008 Lyon, France
| | - Lars Petter Jordheim
- Univ. Lyon, Université Claude Bernard Lyon 1, INSERM U1052, CNRS 5286, Centre Léon Bérard, Centre de Recherche en Cancérologie de Lyon, 69008 Lyon, France
| | - Suzanne Peyrottes
- Institut des Biomolécules Max Mousseron (IBMM), Univ. Montpellier, CNRS, ENSCM, 34095 Montpellier, France.
| |
Collapse
|
2
|
Ghosh S, Biswas K, Basu B. Recent Advances in Microwave Promoted C-P Cross-coupling Reactions. CURRENT MICROWAVE CHEMISTRY 2020. [DOI: 10.2174/2213335607666200401144724] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
:
Organophosphorous compounds are of potential importance in diverse fields. They are often
used as intermediates for making functionalized phosphine ligands as well as find vast applications
in the areas of industrial, agricultural and biological chemistry. The microwave-assisted synthesis
of C-P bonds has become increasingly popular because of its various advantages over conventional
heating in the perspectives of green chemistry.
:
This review article has primarily focused on the synthesis of various organophosphorous molecules
via microwave promoted C-P cross-coupling reactions under metal-catalyzed or metal–free conditions
over the last two decades. The synthesis of phosphine ligands on 4,4′-bisquinolone structural framework,
disubstituted phosphinic acid esters, vinyl phosphines, aryl- and vinylphosphonates, sugar and
nucleoside phosphonates, aminobisphosphonates, triphenyl phosphines, water-soluble tertiary phosphine
oxides and many other potentially useful organophosphorous compounds have been illustrated
critically. The Hirao reaction, Michaelis-Arbuzov reaction and Sandmeyer type of reactions are generally
involved in creating C-P bonds. The role of various metal catalysts, solvents, bases, additives
and temperature in different literatures are carefully discussed.
Collapse
Affiliation(s)
- Sujit Ghosh
- Department of Chemistry, Raiganj Surendranath Mahavidyalaya, Raiganj 733134, India
| | - Kinkar Biswas
- Department of Chemistry, Raiganj University, Raiganj 733134, India
| | - Basudeb Basu
- Department of Chemistry, Raiganj University, Raiganj 733134, India
| |
Collapse
|
3
|
Kozarski M, Kubacka D, Wojtczak BA, Kasprzyk R, Baranowski MR, Kowalska J. 7-Methylguanosine monophosphate analogues with 5'-(1,2,3-triazoyl) moiety: Synthesis and evaluation as the inhibitors of cNIIIB nucleotidase. Bioorg Med Chem 2017; 26:191-199. [PMID: 29195795 DOI: 10.1016/j.bmc.2017.11.032] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 11/16/2017] [Accepted: 11/20/2017] [Indexed: 12/26/2022]
Abstract
The hydrolysis of nucleoside 5'-monophosphates to the corresponding nucleosides and inorganic phosphate is catalysed by 5'-nucleotidases, thereby contributing to the control of endogenous nucleotide turnover and affecting the fate of exogenously delivered nucleotide- and nucleoside-derived therapeutics in cells. A recently identified nucleotidase cNIIIB shows preference towards 7-methylguanosine monophosphate (m7GMP) as a substrate, which suggests its potential involvement in mRNA degradation. However, the extent of biological functions and the significance of cNIIIB remains to be elucidated. Here, we synthesised a series of m7GMP analogues carrying a 1,2,3-triazole moiety at the 5' position as the potential inhibitors of human cNIIIB. The compounds were synthesised by using the copper-catalysed azide-alkyne cycloaddition (CuAAC) between 5'-azido-5'-deoxy-7-methylguanosine and different phosphate or phosphonate derivatives carrying terminal alkyne. The analogues were evaluated as cNIIIB inhibitors using HPLC and malachite green assays, demonstrating that compound 1a, carrying a 1,2,3-triazoylphosphonate moiety, inhibits cNIIIB activity at micromolar concentrations (IC50 87.8 ± 7.5 µM), while other analogues showed no activity. In addition, compound 1d was identified as an artifical substrate for HscNIIIB. Further characterization of inhibitor 1a revealed that it is poorly recognised by other m7G-binding proteins, eIF4E and DcpS, indicating its selectivity towards cNIIIB. The first inhibitor (1a) and unnatural substrate (1d) of cNIIIB, identified here, can be used as molecular probes for the elucidation of biological roles of cNIIIB, including the verification of its proposed function in mRNA metabolism.
Collapse
Affiliation(s)
- Mateusz Kozarski
- University of Warsaw, Faculty of Physics, Institute of Experimental Physics, Division of Biophysics, Pasteura 5, 02-093 Warsaw, Poland
| | - Dorota Kubacka
- University of Warsaw, Faculty of Physics, Institute of Experimental Physics, Division of Biophysics, Pasteura 5, 02-093 Warsaw, Poland
| | - Blazej A Wojtczak
- University of Warsaw, Centre of New Technologies, Banacha 2c, 02-097 Warsaw, Poland
| | - Renata Kasprzyk
- University of Warsaw, Centre of New Technologies, Banacha 2c, 02-097 Warsaw, Poland; University of Warsaw, College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, Banacha 2c, 02-097 Warsaw, Poland
| | - Marek R Baranowski
- University of Warsaw, Faculty of Physics, Institute of Experimental Physics, Division of Biophysics, Pasteura 5, 02-093 Warsaw, Poland
| | - Joanna Kowalska
- University of Warsaw, Faculty of Physics, Institute of Experimental Physics, Division of Biophysics, Pasteura 5, 02-093 Warsaw, Poland.
| |
Collapse
|
4
|
Nguyen Van T, Hospital A, Lionne C, Jordheim LP, Dumontet C, Périgaud C, Chaloin L, Peyrottes S. Beta-hydroxyphosphonate ribonucleoside analogues derived from 4-substituted-1,2,3-triazoles as IMP/GMP mimics: synthesis and biological evaluation. Beilstein J Org Chem 2016; 12:1476-86. [PMID: 27559400 PMCID: PMC4979751 DOI: 10.3762/bjoc.12.144] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Accepted: 06/27/2016] [Indexed: 11/26/2022] Open
Abstract
A series of seventeen β-hydroxyphosphonate ribonucleoside analogues containing 4-substituted-1,2,3-triazoles was synthesized and fully characterized. Such compounds were designed as potential inhibitors of the cytosolic 5'-nucleotidase II (cN-II), an enzyme involved in the regulation of purine nucleotide pools. NMR and molecular modelling studies showed that a few derivatives adopted similar structural features to IMP or GMP. Five derivatives were identified as modest inhibitors with 53 to 64% of cN-II inhibition at 1 mM.
Collapse
Affiliation(s)
- Tai Nguyen Van
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS – Université de Montpellier - ENSCM, Campus Triolet, cc1705, Place Eugène Bataillon, 34095 Montpellier, France
| | - Audrey Hospital
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS – Université de Montpellier - ENSCM, Campus Triolet, cc1705, Place Eugène Bataillon, 34095 Montpellier, France
| | - Corinne Lionne
- Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), FRE 3689 CNRS - Université de Montpellier, 1919 route de Mende, 34293 Montpellier, France
| | - Lars P Jordheim
- Université de Lyon, Université Claude Bernard Lyon 1, INSERM 1052, CNRS 5286, Centre Léon Bérard, Centre de Recherche en Cancérologie de Lyon, 69008 Lyon, France
| | - Charles Dumontet
- Université de Lyon, Université Claude Bernard Lyon 1, INSERM 1052, CNRS 5286, Centre Léon Bérard, Centre de Recherche en Cancérologie de Lyon, 69008 Lyon, France
| | - Christian Périgaud
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS – Université de Montpellier - ENSCM, Campus Triolet, cc1705, Place Eugène Bataillon, 34095 Montpellier, France
| | - Laurent Chaloin
- Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), FRE 3689 CNRS - Université de Montpellier, 1919 route de Mende, 34293 Montpellier, France
| | - Suzanne Peyrottes
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS – Université de Montpellier - ENSCM, Campus Triolet, cc1705, Place Eugène Bataillon, 34095 Montpellier, France
| |
Collapse
|
5
|
Enantiomerically pure phosphonated carbocyclic 2'-oxa-3'-azanucleosides: synthesis and biological evaluation. Molecules 2014; 19:14406-16. [PMID: 25221866 PMCID: PMC6270948 DOI: 10.3390/molecules190914406] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 08/26/2014] [Accepted: 08/29/2014] [Indexed: 12/29/2022] Open
Abstract
Starting from enantiomeric pure 1-[(3S,5R)- and 1-[(3R,5S)-3-(hydroxymethyl)-2-methylisoxazolidin-5-yl]-5-methylpyrimidine-2,4(1H,3H)-diones (-)7a and (+)7b, obtained by lipase-catalyzed resolution, pure diethyl{[(3S,5R)-2-methyl-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)isoxazolidin-3-yl]methyl}phosphonate (-)12a and diethyl{[(3R,5S)-2-methyl-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)isoxazolidin-3-yl]methyl}phosphonate (+)12b have been synthesized. The obtained compounds showed no cytotoxic activity versus the U937 cell line in comparison with AZT, and were poorly able to inhibit HIV infection in vitro.
Collapse
|
6
|
Fer MJ, Doan P, Prangé T, Calvet-Vitale S, Gravier-Pelletier C. A Diastereoselective Synthesis of 5′-Substituted-Uridine Derivatives. J Org Chem 2014; 79:7758-65. [DOI: 10.1021/jo501410m] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Mickaël J. Fer
- Laboratoire
de Chimie et Biochimie Pharmacologiques et Toxicologiques, Université Paris Descartes, UMR 8601 CNRS, 45 rue des Saints Pères, 75006 Paris, France
| | - Pierre Doan
- Laboratoire
de Chimie et Biochimie Pharmacologiques et Toxicologiques, Université Paris Descartes, UMR 8601 CNRS, 45 rue des Saints Pères, 75006 Paris, France
| | - Thierry Prangé
- Laboratoire
de Cristallographie et RMN Biologiques, Université Paris-Descartes,
Faculté des Sciences Pharmaceutiques et Biologiques, UMR 8015 CNRS, 4 avenue de l′Observatoire, 75006 Paris, France
| | - Sandrine Calvet-Vitale
- Laboratoire
de Chimie et Biochimie Pharmacologiques et Toxicologiques, Université Paris Descartes, UMR 8601 CNRS, 45 rue des Saints Pères, 75006 Paris, France
| | - Christine Gravier-Pelletier
- Laboratoire
de Chimie et Biochimie Pharmacologiques et Toxicologiques, Université Paris Descartes, UMR 8601 CNRS, 45 rue des Saints Pères, 75006 Paris, France
| |
Collapse
|
7
|
Meurillon M, Marton Z, Hospital A, Jordheim LP, Béjaud J, Lionne C, Dumontet C, Périgaud C, Chaloin L, Peyrottes S. Structure-activity relationships of β-hydroxyphosphonate nucleoside analogues as cytosolic 5'-nucleotidase II potential inhibitors: synthesis, in vitro evaluation and molecular modeling studies. Eur J Med Chem 2014; 77:18-37. [PMID: 24607586 DOI: 10.1016/j.ejmech.2014.02.055] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Revised: 01/10/2014] [Accepted: 02/22/2014] [Indexed: 12/11/2022]
Abstract
The cytosolic 5'-nucleotidase II (cN-II) has been proposed as an attractive molecular target for the development of novel drugs circumventing resistance to cytotoxic nucleoside analogues currently used for treating leukemia and other malignant hemopathies. In the present work, synthesis of β-hydroxyphosphonate nucleoside analogues incorporating modifications either on the sugar residue or the nucleobase, and their in vitro evaluation towards the purified enzyme were carried out in order to determine their potency towards the inhibition of cN-II. In addition to the biochemical investigations, molecular modeling studies revealed important structural features for binding affinities towards the target enzyme.
Collapse
Affiliation(s)
- Maïa Meurillon
- Institut des biomolécules Max Mousseron (IBMM), UMR 5247 CNRS - UM1 - UM2, Université Montpellier 2, cc1705, Place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Zsuzsanna Marton
- Centre d'études d'agents pathogènes et biotechnologies pour la santé (CPBS), UMR 5236 CNRS - UM1 - UM2, 1919 route de Mende, 34293 Montpellier cedex 5, France
| | - Audrey Hospital
- Institut des biomolécules Max Mousseron (IBMM), UMR 5247 CNRS - UM1 - UM2, Université Montpellier 2, cc1705, Place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Lars Petter Jordheim
- Université de Lyon 1, INSERM U1052 CNRS UMR 5286, Centre de Recherche en Cancérologie de Lyon (CRCL), Centre Léon Bérard, 69000 Lyon, France
| | - Jérôme Béjaud
- Institut des biomolécules Max Mousseron (IBMM), UMR 5247 CNRS - UM1 - UM2, Université Montpellier 2, cc1705, Place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Corinne Lionne
- Centre d'études d'agents pathogènes et biotechnologies pour la santé (CPBS), UMR 5236 CNRS - UM1 - UM2, 1919 route de Mende, 34293 Montpellier cedex 5, France
| | - Charles Dumontet
- Université de Lyon 1, INSERM U1052 CNRS UMR 5286, Centre de Recherche en Cancérologie de Lyon (CRCL), Centre Léon Bérard, 69000 Lyon, France
| | - Christian Périgaud
- Institut des biomolécules Max Mousseron (IBMM), UMR 5247 CNRS - UM1 - UM2, Université Montpellier 2, cc1705, Place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Laurent Chaloin
- Centre d'études d'agents pathogènes et biotechnologies pour la santé (CPBS), UMR 5236 CNRS - UM1 - UM2, 1919 route de Mende, 34293 Montpellier cedex 5, France
| | - Suzanne Peyrottes
- Institut des biomolécules Max Mousseron (IBMM), UMR 5247 CNRS - UM1 - UM2, Université Montpellier 2, cc1705, Place Eugène Bataillon, 34095 Montpellier cedex 5, France.
| |
Collapse
|
8
|
Silva S, Sánchez-Fernández EM, Ortiz Mellet C, Tatibouët A, Pilar Rauter A, Rollin P. N-Thiocarbonyl Iminosugars: Synthesis and Evaluation of Castanospermine Analogues Bearing Oxazole-2(3H)-thione Moieties. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300720] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
|
9
|
Hospital A, Meurillon M, Peyrottes S, Périgaud C. An Alternative Pathway to Ribonucleoside β-Hydroxyphosphonate Analogues and Related Prodrugs. Org Lett 2013; 15:4778-81. [DOI: 10.1021/ol402143y] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Audrey Hospital
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS-UM1-UM2, Nucleosides and Phosphorylated Effectors Team, University Montpellier 2, cc 1705, place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Maïa Meurillon
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS-UM1-UM2, Nucleosides and Phosphorylated Effectors Team, University Montpellier 2, cc 1705, place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Suzanne Peyrottes
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS-UM1-UM2, Nucleosides and Phosphorylated Effectors Team, University Montpellier 2, cc 1705, place Eugène Bataillon, 34095 Montpellier cedex 5, France
| | - Christian Périgaud
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS-UM1-UM2, Nucleosides and Phosphorylated Effectors Team, University Montpellier 2, cc 1705, place Eugène Bataillon, 34095 Montpellier cedex 5, France
| |
Collapse
|
10
|
Jordheim LP, Marton Z, Rhimi M, Cros-Perrial E, Lionne C, Peyrottes S, Dumontet C, Aghajari N, Chaloin L. Identification and characterization of inhibitors of cytoplasmic 5′-nucleotidase cN-II issued from virtual screening. Biochem Pharmacol 2013; 85:497-506. [DOI: 10.1016/j.bcp.2012.11.024] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Revised: 11/29/2012] [Accepted: 11/29/2012] [Indexed: 02/01/2023]
|
11
|
Gallier F, Lallemand P, Meurillon M, Jordheim LP, Dumontet C, Périgaud C, Lionne C, Peyrottes S, Chaloin L. Structural insights into the inhibition of cytosolic 5'-nucleotidase II (cN-II) by ribonucleoside 5'-monophosphate analogues. PLoS Comput Biol 2011; 7:e1002295. [PMID: 22174667 PMCID: PMC3234209 DOI: 10.1371/journal.pcbi.1002295] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2011] [Accepted: 10/20/2011] [Indexed: 02/04/2023] Open
Abstract
Cytosolic 5′-nucleotidase II (cN-II) regulates the intracellular nucleotide pools within the cell by catalyzing the dephosphorylation of 6-hydroxypurine nucleoside 5′-monophosphates. Beside this physiological function, high level of cN-II expression is correlated with abnormal patient outcome when treated with cytotoxic nucleoside analogues. To identify its specific role in the resistance phenomenon observed during cancer therapy, we screened a particular class of chemical compounds, namely ribonucleoside phosphonates to predict them as potential cN-II inhibitors. These compounds incorporate a chemically and enzymatically stable phosphorus-carbon linkage instead of a regular phosphoester bond. Amongst them, six compounds were predicted as better ligands than the natural substrate of cN-II, inosine 5′-monophosphate (IMP). The study of purine and pyrimidine containing analogues and the introduction of chemical modifications within the phosphonate chain has allowed us to define general rules governing the theoretical affinity of such ligands. The binding strength of these compounds was scrutinized in silico and explained by an impressive number of van der Waals contacts, highlighting the decisive role of three cN-II residues that are Phe 157, His 209 and Tyr 210. Docking predictions were confirmed by experimental measurements of the nucleotidase activity in the presence of the three best available phosphonate analogues. These compounds were shown to induce a total inhibition of the cN-II activity at 2 mM. Altogether, this study emphasizes the importance of the non-hydrolysable phosphonate bond in the design of new competitive cN-II inhibitors and the crucial hydrophobic stacking promoted by three protein residues. Nucleotidase activity is part of a biological process that allows the cell to regulate the intracellular pools of nucleotides involved in many signaling pathways. During cancer therapy with cytotoxic nucleoside analogues, the role of cN-II is unclear. Therefore, the development of specific inhibitors against this enzyme is of great interest for understanding its implication in cancer biology and drug resistance. Ribonucleoside phosphonates are of major importance because they behave as bioisosteric analogues of the natural cN-II substrates and contain a chemically and enzymatically stable phosphorus-carbon linkage. Taking the advantages of docking methods, we predicted the inhibitory potential of these compounds. Their binding strength was explained by an impressive interaction network involving mainly three residues of the enzyme (acting as hydrophobic tweezers). These new characterized inhibitors will constitute a valuable tool for elucidating the role of cN-II in cancer cells and may be used in combination with cytotoxic nucleosidic drugs in order to increase their antitumor activity. Furthermore, the strategy taking into account the hydrophobic clamp for designing new inhibitors may be applied to other nucleotidases of the HAD family as two of the three identified residues are present in the substrate binding site of cytosolic 5′-nucleotidase III and 5′-deoxynucleotidase-I.
Collapse
Affiliation(s)
- Franck Gallier
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS – Universités Montpellier 1 et 2, Université Montpellier 2, Montpellier, France
| | - Perrine Lallemand
- Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), UMR 5236, CNRS – Universités Montpellier 1 et 2, Montpellier, France
| | - Maïa Meurillon
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS – Universités Montpellier 1 et 2, Université Montpellier 2, Montpellier, France
| | - Lars P. Jordheim
- Centre de Recherche de Cancérologie de Lyon (CRCL), INSERM U1052, CNRS UMR 5286 – Université Claude Bernard Lyon 1, Lyon, France
| | - Charles Dumontet
- Centre de Recherche de Cancérologie de Lyon (CRCL), INSERM U1052, CNRS UMR 5286 – Université Claude Bernard Lyon 1, Lyon, France
| | - Christian Périgaud
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS – Universités Montpellier 1 et 2, Université Montpellier 2, Montpellier, France
| | - Corinne Lionne
- Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), UMR 5236, CNRS – Universités Montpellier 1 et 2, Montpellier, France
| | - Suzanne Peyrottes
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS – Universités Montpellier 1 et 2, Université Montpellier 2, Montpellier, France
| | - Laurent Chaloin
- Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé (CPBS), UMR 5236, CNRS – Universités Montpellier 1 et 2, Montpellier, France
- * E-mail:
| |
Collapse
|
12
|
Jansa P, Hradil O, Baszczyňski O, Dračínský M, Klepetářová B, Holý A, Balzarini J, Janeba Z. An efficient microwave-assisted synthesis and biological properties of polysubstituted pyrimidinyl- and 1,3,5-triazinylphosphonic acids. Tetrahedron 2011; 68:865-871. [PMID: 32287424 PMCID: PMC7125588 DOI: 10.1016/j.tet.2011.11.040] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2011] [Revised: 10/26/2011] [Accepted: 11/14/2011] [Indexed: 11/29/2022]
Abstract
Polysubstituted pyrimidinylphosphonic and 1,3,5-triazinylphosphonic acids with potential biological properties were prepared in high yields by the microwave-assisted Michaelis-Arbuzov reaction of trialkyl phosphite with the corresponding halopyrimidines and halo-1,3,5-triazines, respectively, followed by the standard deprotection of the phosphonate group using TMSBr in acetonitrile. 4,6-Diamino-5-chloropyrimidin-2-ylphosphonic acid (7a) was found to exhibit a weak to moderate anti-influenza activity (28-50 μM) and may represent a novel hit for further SAR studies and antiviral improvement.
Collapse
Affiliation(s)
- Petr Jansa
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Ondřej Hradil
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Ondřej Baszczyňski
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Blanka Klepetářová
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Antonín Holý
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| | - Jan Balzarini
- Rega Institute for Medical Research, KU Leuven, Minderbroedersstraat 10, B-3000 Leuven, Belgium
| | - Zlatko Janeba
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nám. 2, CZ-16610 Prague 6, Czech Republic
| |
Collapse
|
13
|
Meurillon M, Chaloin L, Périgaud C, Peyrottes S. Synthesis of Pyrimidine-Containing Nucleoside β-(R/S)-Hydroxyphosphonate Analogues. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100219] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
|
14
|
Gallier F, Alexandre JAC, El Amri C, Deville-Bonne D, Peyrottes S, Périgaud C. 5′,6′-Nucleoside Phosphonate Analogues Architecture: Synthesis and Comparative Evaluation towards Metabolic Enzymes. ChemMedChem 2011; 6:1094-106. [DOI: 10.1002/cmdc.201100068] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2011] [Revised: 04/04/2011] [Indexed: 01/27/2023]
|
15
|
Houghton SR, Melton J, Fortunak J, Brown Ripin DH, Boddy CN. Rapid, mild method for phosphonate diester hydrolysis: development of a one-pot synthesis of tenofovir disoproxil fumarate from tenofovir diethyl ester. Tetrahedron 2010. [DOI: 10.1016/j.tet.2010.08.037] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
16
|
Ganesan M, Muraleedharan KM. Synthesis of beta-hydroxyphosphonate and 1,2-dihydroxy acyclic nucleoside analogs via 1,3-dipolar cycloaddition strategy. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2010; 29:91-6. [PMID: 20391196 DOI: 10.1080/15257771003597709] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
A convenient synthetic approach toward nucleoside analogs where beta-hydroxyphosphonate- or 1,2-dihydroxy units are connected to the nucleic acid base through a triazole spacer is discussed.
Collapse
Affiliation(s)
- M Ganesan
- Department of Chemistry, Indian Institute of Technology Madras, Chennai, India
| | | |
Collapse
|
17
|
Zhong S, Mondon M, Len C. Synthesis of a novel uridine analogue and its use in attempts to form new cyclonucleosides using ring-closing metathesis. Sci China Chem 2010. [DOI: 10.1007/s11426-010-4063-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
18
|
Synthesis of 3-vinyl-2,5-dihydrofuran ring system via enyne metathesis. Carbohydr Res 2010; 345:324-9. [DOI: 10.1016/j.carres.2009.09.023] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2009] [Revised: 09/09/2009] [Accepted: 09/22/2009] [Indexed: 11/23/2022]
|
19
|
Meurillon M, Gallier F, Peyrottes S, Périgaud C. Developing an efficient route to the synthesis of nucleoside 1-alkynylphosphonates. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.05.064] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|