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Özcan BD, Zimmermann ML, Ren M, Bols M. New methods of modification of α-cyclodextrin. Org Biomol Chem 2024; 22:7092-7102. [PMID: 39171533 DOI: 10.1039/d4ob01109k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2024]
Abstract
While being some of the oldest supramolecular hosts, cyclodextrins remain very popular as molecular binders in materials, devices, artificial enzymes and more. The popularity is undoubtedly connected to the ready availability, carbohydrate biomass origin, biodegradability and water solubility of the cyclodextrins. Many of these applications require synthetic modification of the cyclodextrin - at the simplest the attachment of a linker - but also often attachment of several functional groups, lids, bridges etc. Here we review state of the art methods of modifying α-cyclodextrin, which include direct modications of unprotected α-cyclodextrin and protection/deprotection method to partially modified cyclodextrins.
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Affiliation(s)
- Bilge Deniz Özcan
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 København Ø, Denmark.
| | - Morten Lang Zimmermann
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 København Ø, Denmark.
| | - Mingzhe Ren
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 København Ø, Denmark.
| | - Mikael Bols
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 København Ø, Denmark.
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2
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Programmed Synthesis of Hepta‐Differentiated β‐Cyclodextrin: 1 out of 117655 Arrangements. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202102182] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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3
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Liu J, Wang B, Przybylski C, Bistri-Aslanoff O, Ménand M, Zhang Y, Sollogoub M. Programmed Synthesis of Hepta-Differentiated β-Cyclodextrin: 1 out of 117655 Arrangements. Angew Chem Int Ed Engl 2021; 60:12090-12096. [PMID: 33650730 DOI: 10.1002/anie.202102182] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Indexed: 01/23/2023]
Abstract
Cyclodextrin poly-functionalization has fueled progress in their use in multiple applications such as enzyme mimicry, but also in the polymer sciences, luminescence, as sensors or for biomedical applications. However, regioselective access to a given pattern of functions on β-cyclodextrin is still very limited. We uncover a new orienting group, the thioacetate, that expands the toolbox available for cyclodextrin poly-hetero-functionalization using diisobutylaluminum hydride (DIBAL-H) promoted debenzylation. The usefulness of this group is illustrated in the first synthesis of a precisely hepta-hetero-functionalized β-cyclodextrin. By way of comparison, a random hepta-functionalization would give 117655 different molecules. This synthesis is not simply the vain quest for the Holy Grail of CD hetero-functionalization, but it illustrates the versatility of the DIBAL-H oriented hetero-functionalization strategy, opening the way to a multitude of useful functionalization patterns for new practical applications.
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Affiliation(s)
- Jiang Liu
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
| | - Bo Wang
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
| | - Cédric Przybylski
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
| | - Olivia Bistri-Aslanoff
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
| | - Mickaël Ménand
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
| | - Yongmin Zhang
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
| | - Matthieu Sollogoub
- Sorbonne Université, CNRS, Institut Parisien de Chimie Moléculaire (IPCM), UMR 8232, 4, place Jussieu, 75005, Paris, France
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2011-2012. MASS SPECTROMETRY REVIEWS 2017; 36:255-422. [PMID: 26270629 DOI: 10.1002/mas.21471] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Accepted: 01/15/2015] [Indexed: 06/04/2023]
Abstract
This review is the seventh update of the original article published in 1999 on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2012. General aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, and fragmentation are covered in the first part of the review and applications to various structural types constitute the remainder. The main groups of compound are oligo- and poly-saccharides, glycoproteins, glycolipids, glycosides, and biopharmaceuticals. Much of this material is presented in tabular form. Also discussed are medical and industrial applications of the technique, studies of enzyme reactions, and applications to chemical synthesis. © 2015 Wiley Periodicals, Inc. Mass Spec Rev 36:255-422, 2017.
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Affiliation(s)
- David J Harvey
- Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford, OX1 3QU, UK
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Affiliation(s)
- Michal Řezanka
- Institute for Nanomaterials; Advanced Technologies and Innovation; Technical University of Liberec; Studentská 1402/2 461 17 Liberec Czech Republic
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Chmurski K, Stepniak P, Jurczak J. Long-chain-linked β-cyclodextrin dimers: Synthesis and relationship between reactivity and inclusion complex formation. Carbohydr Polym 2016; 138:8-15. [DOI: 10.1016/j.carbpol.2015.11.054] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 11/23/2015] [Indexed: 02/09/2023]
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Faggi E, Pérez Y, Luis SV, Alfonso I. Supramolecular protection from the enzymatic tyrosine phosphorylation in a polypeptide. Chem Commun (Camb) 2016; 52:8142-5. [DOI: 10.1039/c6cc03875a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Two pseudopeptidic cages bind the EYE peptide motif of poly(EY) in buffered water, as shown by NMR and fluorescence spectroscopy. This supramolecular interaction protects the Tyr residues from the enzymatic phosphorylation by PTK.
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Affiliation(s)
- Enrico Faggi
- Department of Biological Chemistry and Molecular Modelling
- IQAC-CSIC
- Barcelona
- Spain
| | | | - Santiago V. Luis
- Department of Inorganic and Organic Chemistry
- ESTCE Universitat Jaume I
- Castellón
- Spain
| | - Ignacio Alfonso
- Department of Biological Chemistry and Molecular Modelling
- IQAC-CSIC
- Barcelona
- Spain
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Faggi E, Vicent C, Luis SV, Alfonso I. Stereoselective recognition of the Ac-Glu-Tyr-OH dipeptide by pseudopeptidic cages. Org Biomol Chem 2015; 13:11721-31. [PMID: 26481115 DOI: 10.1039/c5ob01889g] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Pseudopeptidic molecular cages are appealing receptors since they can display different polar and non-polar interaction sites in a modular framework and a controlled disposition. Inspired by previous host-guest knowledge, two pseudopeptidic molecular cages based on serine and threonine (CySer and CyThr, respectively) were designed and synthesized as hosts for the binding of the four possible stereoisomers of the Ac-Glu-Tyr-OH dipeptide, a target sequence of tyrosine kinases. The careful NMR titration experiments in aqueous acetonitrile allowed the determination of the binding constants and reflected a difference in the stability of the corresponding diastereomeric host-guest complexes. The CySer cage proved to be slightly more efficient than the CyThr counterpart, although both showed similar stereoselectivity trends: LL > DD ≥ LD > DL. This stereoselective binding was retained in the gas phase, as shown by ESI-MS competition experiments using the enantiomer-labelled method (EL), as well as CID experiments. Thus, the MS-determined discriminations follow the same trends observed by NMR, suggesting that the stereoselectivity observed for these systems must be mainly dictated by the polar host-guest interactions. Despite the stereoselective binding of short peptide sequences in competitive media being a challenging issue in supramolecular chemistry, our results demonstrate the power of pseudopeptidic cages in molecular recognition with foreseen implications in chemical biology.
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Affiliation(s)
- Enrico Faggi
- Department of Biological Chemistry and Molecular Modeling, IQAC-CSIC, Jordi Girona, 18-26, E-08034, Barcelona, Spain.
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Straightforward synthesis towards mono and bis-phosphonic acid functionalised β-cyclodextrins. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.12.019] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Kurlemann M, Ravoo BJ. Towards the sequence-specific multivalent molecular recognition of cyclodextrin oligomers. Beilstein J Org Chem 2014; 10:2428-40. [PMID: 25383113 PMCID: PMC4222322 DOI: 10.3762/bjoc.10.253] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2014] [Accepted: 09/19/2014] [Indexed: 01/01/2023] Open
Abstract
Sequence-specific multivalent molecular recognition has been recognized to play a major role in biological processes. Furthermore, sequence-specific recognition motifs have been used in various artificial systems in the last years, e.g., to emulate biological processes or to build up new materials with highly specific recognition domains. In this article, we present the preparation of cyclodextrin (CD)-based strands and complementary and non-complementary strands modified with guest molecules and the investigation of their complexation behavior towards each other by isothermal titration calorimetry (ITC). As complementary binding motifs n-butyl and α-CD and adamantane and β-CD were selected. It was found that it is possible to realize sequence-specific molecular recognition by the use of host–guest chemistry, but the recognition motifs as well as the linkages have to be chosen very carefully. In the case of trivalent systems one adamantane moiety must be included to induce preferred formation of 1:1 adducts. Due to the too weak interaction between n-butyl and α-CD these systems have a negative chelate cooperativity and open adducts are preferentially formed. As soon as two adamantane moieties are present, the complementary systems have a positive chelate cooperativity and double-stranded structures are favored over open adducts. In this system the n-butyl moiety provides insufficient discrimination towards α- and β-CD and no sequence specificity is observed. By the combination of three adamantane moieties sequence specificity can be generated. Exclusively with the complementary CD sequence double-stranded structures are formed, with non-complementary strands aggregates of higher stoichiometry are generated.
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Affiliation(s)
- Michael Kurlemann
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Bart Jan Ravoo
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
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Gu J, Chen T, Zhang P, Ling CC. Controlled Acid-Mediated RegioselectiveO-Desilylations for Multifunctionalization of Cyclodextrins. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402802] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Becker MM, Zeng Z, Ravoo BJ. Multivalent Functionalization of Cyclodextrins by Photochemical Thiol-Ene Addition Reaction. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300880] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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Barge A, Caporaso M, Cravotto G, Martina K, Tosco P, Aime S, Carrera C, Gianolio E, Pariani G, Corpillo D. Design and Synthesis of a γ1β8-Cyclodextrin Oligomer: A New Platform with Potential Application as a Dendrimeric Multicarrier. Chemistry 2013; 19:12086-92. [DOI: 10.1002/chem.201301215] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2013] [Revised: 06/16/2013] [Indexed: 11/07/2022]
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Ghosh R, Hennigan C, Ling CC. DIBAL-H-mediated O-desilylation with highly sterically hindered cyclodextrin substrates. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.04.047] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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15
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Zhao M, Wang HB, Ji LN, Mao ZW. Insights into metalloenzyme microenvironments: biomimetic metal complexes with a functional second coordination sphere. Chem Soc Rev 2013; 42:8360-75. [DOI: 10.1039/c3cs60162e] [Citation(s) in RCA: 149] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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16
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Bláhová M, Bednářová E, Řezanka M, Jindřich J. Complete Sets of Monosubstituted γ-Cyclodextrins as Precursors for Further Synthesis. J Org Chem 2012. [DOI: 10.1021/jo301656p] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Markéta Bláhová
- Department of Organic
Chemistry, Faculty of Science, Charles University in Prague, Hlavova 8, 128 43 Praha
2, Czech Republic
| | - Eva Bednářová
- Department of Organic
Chemistry, Faculty of Science, Charles University in Prague, Hlavova 8, 128 43 Praha
2, Czech Republic
| | - Michal Řezanka
- Department of Organic
Chemistry, Faculty of Science, Charles University in Prague, Hlavova 8, 128 43 Praha
2, Czech Republic
| | - Jindřich Jindřich
- Department of Organic
Chemistry, Faculty of Science, Charles University in Prague, Hlavova 8, 128 43 Praha
2, Czech Republic
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Zhou Y, Marinescu L, Pedersen CM, Bols M. Synthesis of Tin-Containing Cyclodextrins as Potential Enzyme Models. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200756] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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18
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Faugeras PA, Boëns B, Elchinger PH, Brouillette F, Montplaisir D, Zerrouki R, Lucas R. When Cyclodextrins Meet Click Chemistry. European J Org Chem 2012. [DOI: 10.1002/ejoc.201200013] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Chou TC, Liao KC, Hwa CL, Tseng JC. Bicyclo[2.2.2]octene-Based Molecular Tweezers and Cyclophanes. J CHIN CHEM SOC-TAIP 2012. [DOI: 10.1002/jccs.201100644] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Zengerle M, Brandhuber F, Schneider C, Worek F, Reiter G, Kubik S. Highly efficient cyclosarin degradation mediated by a β-cyclodextrin derivative containing an oxime-derived substituent. Beilstein J Org Chem 2011; 7:1543-54. [PMID: 22238531 PMCID: PMC3252857 DOI: 10.3762/bjoc.7.182] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2011] [Accepted: 11/08/2011] [Indexed: 12/02/2022] Open
Abstract
The potential of appropriately substituted cyclodextrins to act as scavengers for neurotoxic organophosphonates under physiological conditions was evaluated. To this end, a series of derivatives containing substituents with an aldoxime or a ketoxime moiety along the narrow opening of the β-cyclodextrin cavity was synthesized, and the ability of these compounds to reduce the inhibitory effect of the neurotoxic organophosphonate cyclosarin on its key target, acetylcholinesterase, was assessed in vitro. All compounds exhibited a larger effect than native β-cyclodextrin, and characteristic differences were noted. These differences in activity were correlated with the structural and electronic parameters of the substituents. In addition, the relatively strong effect of the cyclodextrin derivatives on cyclosarin degradation and, in particular, the observed enantioselectivity are good indications that noncovalent interactions between the cyclodextrin ring and the substrate, presumably involving the inclusion of the cyclohexyl moiety of cyclosarin into the cyclodextrin cavity, contribute to the mode of action. Among the nine compounds investigated, one exhibited remarkable activity, completely preventing acetylcholinesterase inhibition by the (−)-enantiomer of cyclosarin within seconds under the conditions of the assay. Thus, these investigations demonstrate that decoration of cyclodextrins with appropriate substituents represents a promising approach for the development of scavengers able to detoxify highly toxic nerve agents.
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Affiliation(s)
- Michael Zengerle
- Fachbereich Chemie - Organische Chemie, Technische Universität Kaiserslautern, Erwin-Schrödinger-Straße, D-67663 Kaiserslautern, Germany
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Ghosh R, Zhang P, Wang A, Ling CC. Diisobutylaluminum Hydride Mediated Regioselective O Desilylations: Access to Multisubstituted Cyclodextrins. Angew Chem Int Ed Engl 2011; 51:1548-52. [DOI: 10.1002/anie.201105737] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2011] [Indexed: 11/12/2022]
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Ghosh R, Zhang P, Wang A, Ling CC. Diisobutylaluminum Hydride Mediated Regioselective O Desilylations: Access to Multisubstituted Cyclodextrins. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201105737] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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