Resorcin[4]arene-Based Molecular Baskets and Water-Soluble Container Molecules: Synthesis and1H NMR Host-Guest Complexation Studies

Water-Soluble Molecular Cages for Biological Applications

The field of molecular cages has attracted increasing interest in relation to the development of biological applications, as evidenced by the remarkable examples published in recent years. Two key factors have contributed to this achievement: First, the remarkable and adjustable host-guest chemical properties of molecular cages make them highly suitable for biological applications. This allows encapsulating therapeutic molecules to improve their properties. Second, significant advances have been made in synthetic methods to create water-soluble molecular cages. Achieving the necessary water solubility is a significant challenge, which in most cases requires specific chemical groups to overcome the inherent hydrophobic nature of the molecular cages which feature the organic components of the cage. This can be achieved by either incorporating water-solubilizing groups with negative/positive charges, polyethylene glycol chains, etc.; or by introducing charges directly into the cage structure itself. These synthetic strategies allow preparing water-soluble molecular cages for diverse biological applications, including cages' anticancer activity, anticancer drug delivery, photodynamic therapy, and molecular recognition of biological molecules. In the review we describe selected examples that show the main concepts to achieve water solubility in molecular cages and some selected recent biological applications.

Purely Covalent Molecular Cages and Containers for Guest Encapsulation

Cage compounds offer unique binding pockets similar to enzyme-binding sites, which can be customized in terms of size, shape, and functional groups to point toward the cavity and many other parameters. Different synthetic strategies have been developed to create a toolkit of methods that allow preparing tailor-made organic cages for a number of distinct applications, such as gas separation, molecular recognition, molecular encapsulation, hosts for catalysis, etc. These examples show the versatility and high selectivity that can be achieved using cages, which is impossible by employing other molecular systems. This review explores the progress made in the field of fully organic molecular cages and containers by focusing on the properties of the cavity and their application to encapsulate guests.

Tuning the conformational flexibility of quinoxaline cavitands for complexation at the gas-solid interface

The selectivity and efficiency of benzene and toluene uptake at the gas-solid interface by quinoxaline cavitands is strongly enhanced by partial rigidification of the receptor cavity and immobilization of the cavitand onto silica gel particles.

Polarity-Tolerant Chloride Binding in Foldamer Capsules by Programmed Solvent-Exclusion

Persistent anion binding in a wide range of solution environments is a key challenge that continues to motivate and demand new strategies in synthetic receptor design. Though strong binding in low-polarity solvents has become routine, our ability to maintain high affinities in high-polarity solvents has not yet reached the standard set by nature. Anions are bound and transported regularly in aqueous environments by proteins that use secondary and tertiary structure to isolate anion binding sites from water. Inspired by this principle of solvent exclusion, we created a sequence-defined foldameric capsule whose global minimum conformation displays a helical folded state and is preorganized for 1:1 anion complexation. The high stability of the folded geometry and its ability to exclude solvent were supported by solid-state and solution phase studies. This capsule then withstood a 4-fold increase in solvent dielectric constant (ε_r) from dichloromethane (9) to acetonitrile (36) while maintaining a high and solvent-independent affinity of 10⁵ M^-1; ΔG ∼ 28 kJ mol^-1. This behavior is unusual. More typical of solvent-dependent behavior, Cl^- affinities were seen to plummet in control compounds, such as aryl-triazole macrocycles and pentads, with their solvent-exposed binding cavities susceptible to dielectric screening. Finally, dimethyl sulfoxide denatures the foldamer by putative solvent binding, which then lowers the foldamer's Cl^- affinity to normal levels. The design of this capsule demonstrates a new prototype for the development of potent receptors that can operate in polar solvents and has the potential to help manage hydrophilic anions present in the hydrosphere and biosphere.

Creating Patterned Conjugated Polymer Images Using Water-Compatible Reactive Inkjet Printing

The fabrication of patterned conjugated polymer images on solid substrates has gained significant attention recently. Office inkjet printers can be used to generate flexible designs of functional materials on substrates on a large scale and in an inexpensive manner. Although creating patterns of conjugated polymers on paper using common office inkjet printers has been reported, only a few examples exist, such as polyaniline (PANI) and poly(3,4-ethylenedioxythiophene) (PEDOT), because only water-compatible inks can be utilized. Herein, we describe the production of poly(phenylenevinylene) (PPV) patterns on paper by employing a reactive inkjet printing (RIJ) method. In this process, printing of a hydrophilic terephthaldehyde, bis(triphenylphosphonium salt) and potassium t-butoxide using a common office inkjet printer leads to formation PPV patterns as a consequence of an in situ Wittig reaction. In addition, microarrayed PPV patterns are also readily generated on solid substrates, such as glass and PDMS, when a piezoelectric dispenser system is employed. The in situ prepared PPV was found to be insoluble in water and chloroform. As a result, unreacted excess reagents and byproducts can be efficiently removed by washing with these solvents.

Bis-resorcin[4]arene–bridged porphyrin conjugates: synthesis, fluorescence and binding studies

The synthesis of bis-resorcin[4]arene–bridged porphyrin conjugates and effect of the structure type on binding, and fluorescence quenching behaviors are presented.

Structurally Flexible C₃-Symmetric Receptors for Molecular Recognition and Their Self-Assembly Properties

The bioinspired design and synthesis of building blocks and their assemblies by the supramolecular approach has ever fascinated scientists to utilize such artificial systems for numerous purposes. Flexibility is a basic feature of natural systems. However, in artificial systems this is difficult to control, especially if there is no preorganization of the component(s) of a system. We have designed and synthesized a series of C3 -symmetric N-bridged flexible receptors and successfully utilized them to selectively entrap the notorious and toxic nitrate anion in aqueous medium. This was the first report of highest binding affinity for the nitrate anion in aqueous medium. An impressive self-sorting phenomenon of reversibly formed hydrogen-bonded capsules, which self-assembled from flexible tripodal receptors having branches of similar size and bearing the same amide functionality, has been disclosed. Encapsulated nitrate anion has been further utilized for the photochemical [2+2] cycloaddition reaction for the synthesis of strained four-membered ring structures through dynamic self-assembly. In this Personal Account, we summarize these results showing the utility of naturally inspired flexibility in artificial systems.

Molecular recognition in chemical and biological systems

Structure-based ligand design in medicinal chemistry and crop protection relies on the identification and quantification of weak noncovalent interactions and understanding the role of water. Small-molecule and protein structural database searches are important tools to retrieve existing knowledge. Thermodynamic profiling, combined with X-ray structural and computational studies, is the key to elucidate the energetics of the replacement of water by ligands. Biological receptor sites vary greatly in shape, conformational dynamics, and polarity, and require different ligand-design strategies, as shown for various case studies. Interactions between dipoles have become a central theme of molecular recognition. Orthogonal interactions, halogen bonding, and amide⋅⋅⋅π stacking provide new tools for innovative lead optimization. The combination of synthetic models and biological complexation studies is required to gather reliable information on weak noncovalent interactions and the role of water.

Effect of the resorcin[4]arene host on the catalytic epoxidation of a Mn(iii)-based resorcin[4]arene–metalloporphyrin conjugate

The single-crystal X-ray diffraction data, binding behavior, and epoxidation reactions of the cavitand resorcin[4]arene–porphyrin conjugate are presented.