1
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van der Peet PL, Joyce RD, Ott H, Marcuccio SM, White JM, Williams SJ. Synthesis and structure of clozapine N-oxide hemi(hydro-chloride): an infinite hydrogen-bonded poly[ n]catenane. Acta Crystallogr E Crystallogr Commun 2022; 78:1056-1060. [PMID: 36250113 PMCID: PMC9535830 DOI: 10.1107/s2056989022009306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Accepted: 09/21/2022] [Indexed: 12/01/2022]
Abstract
The structure of the title compound, 2C18H19ClN4O·HCl or (CNO)2·HCl (C36H39Cl3N8O2), at 100 K has tetra-gonal (I4/m) symmetry. The dihedral angle between the benzene rings of the fused ring system of the CNO mol-ecule is 40.08 (6)° and the equivalent angle between the seven-membered ring and its pendant N-oxide ring is 31.14 (7)°. The structure contains a very strong, symmetrical O-H⋯O hydrogen bond [O⋯O = 2.434 (2) Å] between two equivalent R 3N+-O- moieties, which share a proton lying on a crystallographic twofold rotation axis. These units then form a (CNO)4·(HCl)2 ring by way of two equivalent N-H⋯Cl hydrogen bonds (Cl- site symmetry m). These rings are catenated into infinite chains propagating along the c-axis direction by way of shape complementarity and directional C-H⋯N and C-H⋯π inter-actions.
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Affiliation(s)
- Phillip L. van der Peet
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, 3010, Australia
| | - Rohan D. Joyce
- Advanced Molecular Technologies, Unit 1, 7-11 Rocco Drive, Scoresby, Victoria, 3179, Australia
| | - Holger Ott
- Bruker AXS GmbH, Oestliche Rheinbrueckenstr. 49, 76187 Karlsruhe, Germany
| | - Sebastian M. Marcuccio
- Advanced Molecular Technologies, Unit 1, 7-11 Rocco Drive, Scoresby, Victoria, 3179, Australia
| | - Jonathan M. White
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, 3010, Australia
| | - Spencer J. Williams
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, 3010, Australia
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2
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Weingart P, Hütchen P, Damone A, Kohns M, Hasse H, Thiel WR. Two Simple and Highly Efficient Variants of the Griffith‐Ley Oxidation of Alcohols. ChemCatChem 2020. [DOI: 10.1002/cctc.202000413] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Pascal Weingart
- Fachbereich Chemie Technische Universität Kaiserslautern Erwin-Schrödinger-Str. 54 67663 Kaiserslautern Germany
| | - Patrick Hütchen
- Fachbereich Chemie Technische Universität Kaiserslautern Erwin-Schrödinger-Str. 54 67663 Kaiserslautern Germany
| | - Angelo Damone
- Lehrstuhl für Thermodynamik Fachbereich Maschinenbau und Verfahrenstechnik Technische Universität Kaiserslautern Erwin-Schrödinger-Str. 44 67663 Kaiserslautern Germany
| | - Maximilian Kohns
- Lehrstuhl für Thermodynamik Fachbereich Maschinenbau und Verfahrenstechnik Technische Universität Kaiserslautern Erwin-Schrödinger-Str. 44 67663 Kaiserslautern Germany
| | - Hans Hasse
- Lehrstuhl für Thermodynamik Fachbereich Maschinenbau und Verfahrenstechnik Technische Universität Kaiserslautern Erwin-Schrödinger-Str. 44 67663 Kaiserslautern Germany
| | - Werner R. Thiel
- Fachbereich Chemie Technische Universität Kaiserslautern Erwin-Schrödinger-Str. 54 67663 Kaiserslautern Germany
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3
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Żesławska E, Kalinowska-Tłuścik J, Nitek W, Marona H, Waszkielewicz AM. Influence of the position of the methyl substituent and N-oxide formation on the geometry and intermolecular interactions of 1-(phenoxyethyl)piperidin-4-ol derivatives. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY 2020; 76:30-36. [PMID: 31919305 DOI: 10.1107/s2053229619015948] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2019] [Accepted: 11/26/2019] [Indexed: 11/11/2022]
Abstract
Aminoalkanol derivatives have attracted much interest in the field of medicinal chemistry as part of the search for new anticonvulsant drugs. In order to study the influence of the methyl substituent and N-oxide formation on the geometry of molecules and intermolecular interactions in their crystals, three new examples have been prepared and their crystal structures determined by X-ray diffraction. 1-[(2,6-Dimethylphenoxy)ethyl]piperidin-4-ol, C15H23NO2, 1, and 1-[(2,3-dimethylphenoxy)ethyl]piperidin-4-ol, C15H23NO2, 2, crystallize in the orthorhombic system (space groups P212121 and Pbca, respectively), with one molecule in the asymmetric unit, whereas the N-oxide 1-[(2,3-dimethylphenoxy)ethyl]piperidin-4-ol N-oxide monohydrate, C15H23NO3·H2O, 3, crystallizes in the monoclinic space group P21/c, with one N-oxide molecule and one water molecule in the asymmetric unit. The geometries of the investigated compounds differ significantly with respect to the conformation of the O-C-C linker, the location of the hydroxy group in the piperidine ring and the nature of the intermolecular interactions, which were investigated by Hirshfeld surface and corresponding fingerprint analyses. The crystal packing of 1 and 2 is dominated by a network of O-H...N hydrogen bonds, while in 3, it is dominated by O-H...O hydrogen bonds and results in the formation of chains.
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Affiliation(s)
- Ewa Żesławska
- Pedagogical University of Cracow, Institute of Biology, Podchorążych 2, 30-084 Kraków, Poland
| | | | - Wojciech Nitek
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Henryk Marona
- Department of Bioorganic Chemistry, Chair of Organic Chemistry, Faculty of Pharmacy, Jagiellonian University Medical College, Medyczna 9, 30-688 Kraków, Poland
| | - Anna M Waszkielewicz
- Department of Bioorganic Chemistry, Chair of Organic Chemistry, Faculty of Pharmacy, Jagiellonian University Medical College, Medyczna 9, 30-688 Kraków, Poland
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4
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Determining the necessity of phenyl ring π-character in warfarin. Bioorg Med Chem Lett 2019; 29:1954-1956. [PMID: 31147103 DOI: 10.1016/j.bmcl.2019.05.039] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Revised: 05/18/2019] [Accepted: 05/18/2019] [Indexed: 11/23/2022]
Abstract
Despite the difficulty in administering a safe dose regimen and reports of emerging resistance, warfarin (1) remains the most widely-used oral anticoagulant for the prevention and treatment of thrombosis in humans globally. Systematic substitution of the warfarin phenyl ring with either 1,3,5,7-cyclooctatetraene (COT) (2), cubane (3), cyclohexane (4) or cyclooctane (5) and subsequent evaluation against the target enzyme, vitamin K epoxide reductase (VKOR), facilitated interrogation of both steric and electronic properties of the phenyl pharmacophore. The tolerance of VKOR to further functional group modification (carboxylate 14, PTAD adduct 15) was also investigated. The results demonstrate the importance of both annulene conferred π-interactions and ring size in the activity of warfarin.
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5
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Dallaston MA, Bettencourt CJ, Chow S, Gebhardt J, Spangler J, Johnston MR, Wall C, Brusnahan JS, Williams CM. Ranking Oxidant Sensitiveness: A Guide for Synthetic Utility. Chemistry 2019; 25:9614-9618. [DOI: 10.1002/chem.201902036] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2019] [Indexed: 01/17/2023]
Affiliation(s)
- Madeleine A. Dallaston
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Australia
| | | | - Sharon Chow
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Australia
| | - Joshua Gebhardt
- Flinders Institute for Nanoscale Science and TechnologyCollege of Science and EngineeringFlinders University South Australia 5042 Australia
| | - Jordan Spangler
- Flinders Institute for Nanoscale Science and TechnologyCollege of Science and EngineeringFlinders University South Australia 5042 Australia
| | - Martin R. Johnston
- Flinders Institute for Nanoscale Science and TechnologyCollege of Science and EngineeringFlinders University South Australia 5042 Australia
| | - Craig Wall
- Defence Science and Technology Group Edinburgh South Australia 5111 Australia
| | - Jason S. Brusnahan
- Defence Science and Technology Group Edinburgh South Australia 5111 Australia
| | - Craig M. Williams
- School of Chemistry and Molecular BiosciencesUniversity of Queensland Brisbane 4072 Australia
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6
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Houston SD, Xing H, Bernhardt PV, Vanden Berg TJ, Tsanaktsidis J, Savage GP, Williams CM. Cyclooctatetraenes through Valence Isomerization of Cubanes: Scope and Limitations. Chemistry 2019; 25:2735-2739. [DOI: 10.1002/chem.201805124] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Indexed: 11/07/2022]
Affiliation(s)
- Sevan D. Houston
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Queensland Australia
| | - Hui Xing
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Queensland Australia
| | - Paul V. Bernhardt
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Queensland Australia
| | - Timothy J. Vanden Berg
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Queensland Australia
| | - John Tsanaktsidis
- CSIRO Manufacturing Ian Wark Laboratory Melbourne 3168 Victoria Australia
| | - G. Paul Savage
- CSIRO Manufacturing Ian Wark Laboratory Melbourne 3168 Victoria Australia
| | - Craig M. Williams
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Queensland Australia
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7
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Zakharov AV, Lvov AG, Rostovtseva IA, Metelitsa AV, Chernyshev AV, Krayushkin MM, Yadykov AV, Shirinian VZ. Photocyclization of diarylethenes: the effect of imidazole on the oxidative photodegradation process. Photochem Photobiol Sci 2019; 18:1101-1109. [DOI: 10.1039/c8pp00507a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It was found that imidazole prevents the side process of diarylethenes photocyclization and the photodegradation of photochromic compounds.
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Affiliation(s)
- A. V. Zakharov
- N. D. Zelinsky Institute of Organic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russian Federation
| | - A. G. Lvov
- N. D. Zelinsky Institute of Organic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russian Federation
| | - I. A. Rostovtseva
- Institute of Physical and Organic Chemistry
- Southern Federal University
- Rostov on Don 344090
- Russian Federation
| | - A. V. Metelitsa
- Institute of Physical and Organic Chemistry
- Southern Federal University
- Rostov on Don 344090
- Russian Federation
| | - A. V. Chernyshev
- Institute of Physical and Organic Chemistry
- Southern Federal University
- Rostov on Don 344090
- Russian Federation
| | - M. M. Krayushkin
- N. D. Zelinsky Institute of Organic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russian Federation
| | - A. V. Yadykov
- N. D. Zelinsky Institute of Organic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russian Federation
| | - V. Z. Shirinian
- N. D. Zelinsky Institute of Organic Chemistry
- Russian Academy of Sciences
- 119991 Moscow
- Russian Federation
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8
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Moore PW, Zerk TJ, Burns JM, Bernhardt PV, Williams CM. Hydrogen‐Bonding Interactions in the Ley–Griffith Oxidation: Practical Considerations for the Synthetic Chemist. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800860] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Peter W. Moore
- School of Chemistry and Molecular Biosciences University of Queensland 4072 Brisbane Australia
| | - Timothy J. Zerk
- School of Chemistry and Molecular Biosciences University of Queensland 4072 Brisbane Australia
| | - Jed M. Burns
- School of Chemistry and Molecular Biosciences University of Queensland 4072 Brisbane Australia
| | - Paul V. Bernhardt
- School of Chemistry and Molecular Biosciences University of Queensland 4072 Brisbane Australia
| | - Craig M. Williams
- School of Chemistry and Molecular Biosciences University of Queensland 4072 Brisbane Australia
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9
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Moore PW, Read CDG, Bernhardt PV, Williams CM. ATP3 and MTP3: Easily Prepared Stable Perruthenate Salts for Oxidation Applications in Synthesis. Chemistry 2018; 24:4556-4561. [DOI: 10.1002/chem.201800531] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Peter W. Moore
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Australia
| | - Christopher D. G. Read
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Australia
| | - Paul V. Bernhardt
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Australia
| | - Craig M. Williams
- School of Chemistry and Molecular Biosciences University of Queensland Brisbane 4072 Australia
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10
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Zerk TJ, Moore PW, Harbort JS, Chow S, Byrne L, Koutsantonis GA, Harmer JR, Martínez M, Williams CM, Bernhardt PV. Elucidating the mechanism of the Ley-Griffith (TPAP) alcohol oxidation. Chem Sci 2017; 8:8435-8442. [PMID: 29619191 PMCID: PMC5863698 DOI: 10.1039/c7sc04260d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 10/16/2017] [Indexed: 01/14/2023] Open
Abstract
The Ley-Griffith reaction is utilized extensively in the selective oxidation of alcohols to aldehydes or ketones. The central catalyst is commercially available tetra-n-propylammonium perruthenate (TPAP, n-Pr4N[RuO4]) which is used in combination with the co-oxidant N-methylmorpholine N-oxide (NMO). Although this reaction has been employed for more than 30 years, the mechanism remains unknown. Herein we report a comprehensive study of the oxidation of diphenylmethanol using the Ley-Griffith reagents to show that the rate determining step involves a single alcohol molecule, which is oxidised by a single perruthenate anion; NMO does not appear in rate law. A key finding of this study is that when pure n-Pr4N[RuO4] is employed in anhydrous solvent, alcohol oxidation initially proceeds very slowly. After this induction period, water produced by alcohol oxidation leads to partial formation of insoluble RuO2, which dramatically accelerates catalysis via a heterogeneous process. This is particularly relevant in a synthetic context where catalyst degradation is usually problematic. In this case a small amount of n-Pr4N[RuO4] must decompose to RuO2 to facilitate catalysis.
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Affiliation(s)
- Timothy J Zerk
- School of Chemistry and Molecular Biosciences , University of Queensland , Brisbane 4072 , Queensland , Australia . ;
| | - Peter W Moore
- School of Chemistry and Molecular Biosciences , University of Queensland , Brisbane 4072 , Queensland , Australia . ;
| | - Joshua S Harbort
- Centre for Advanced Imaging , University of Queensland , Brisbane 4072 , Australia
| | - Sharon Chow
- School of Chemistry and Molecular Biosciences , University of Queensland , Brisbane 4072 , Queensland , Australia . ;
| | - Lindsay Byrne
- Centre for Microscopy, Characterisation and Analysis , University of Western Australia , Crawley , Western Australia 6009 , Australia
| | - George A Koutsantonis
- School of Molecular Sciences , University of Western Australia , Crawley , Western Australia 6009 , Australia
| | - Jeffrey R Harmer
- Centre for Advanced Imaging , University of Queensland , Brisbane 4072 , Australia
| | - Manuel Martínez
- Departament de Química Inorgànica I Orgànica , Secció de Química Inorgànica , Universitat de Barcelona , Martí i Franquès 1-11 , E-08028 Barcelona , Spain
| | - Craig M Williams
- School of Chemistry and Molecular Biosciences , University of Queensland , Brisbane 4072 , Queensland , Australia . ;
| | - Paul V Bernhardt
- School of Chemistry and Molecular Biosciences , University of Queensland , Brisbane 4072 , Queensland , Australia . ;
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11
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Zerk TJ, Moore PW, Williams CM, Bernhardt PV. N-Oxides rescue Ru(v) in catalytic Griffith–Ley (TPAP) alcohol oxidations. Chem Commun (Camb) 2016; 52:10301-4. [PMID: 27471846 DOI: 10.1039/c6cc05440d] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Electrochemistry of tetrapropylammonium perruthenate (TPAP) reveals that an unstable Ru(v) complex is reoxidised by amine N-oxides in catalytic Griffith–Ley alcohol oxidations.
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Affiliation(s)
- Timothy J. Zerk
- School of Chemistry and Molecular Biosciences
- University of Queensland
- Brisbane 4072
- Australia
| | - Peter W. Moore
- School of Chemistry and Molecular Biosciences
- University of Queensland
- Brisbane 4072
- Australia
| | - Craig M. Williams
- School of Chemistry and Molecular Biosciences
- University of Queensland
- Brisbane 4072
- Australia
| | - Paul V. Bernhardt
- School of Chemistry and Molecular Biosciences
- University of Queensland
- Brisbane 4072
- Australia
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