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Ofodum NM, Qi Q, Chandradat R, Warfle T, Lu X. Advancing Dynamic Polymer Mechanochemistry through Synergetic Conformational Gearing. J Am Chem Soc 2024; 146:17700-17711. [PMID: 38888499 DOI: 10.1021/jacs.4c02066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/20/2024]
Abstract
Harnessing mechanical force to modulate material properties and enhance biomechanical functions is essential for advancing smart materials and bioengineering. Polymer mechanochemistry provides an emerging toolkit for exploring unconventional chemical transformations and modulating molecular structures through mechanical force. One of the key challenges is developing innovative force-sensing mechanisms for precise and in situ force detection. This study introduces mDPAC, a dynamic and sensitive mechanophore, demonstrating its mechanochromic properties through synergetic conformational gearing. Its unique mechanoresponsive mechanism is based on the simultaneous conformational synergy between its phenazine and phenyl moieties, facilitated by a worm-gear-like structure. We confirm mDPAC's complex mechanochemical response and elucidate its mechanotransduction mechanism through our experimental data and comprehensive simulations. The compatibility of mDPAC with hydrogels is particularly notable, highlighting its potential for applications in aqueous biological environments as a dynamic force sensor. Moreover, mDPAC's multicolored mechanochromic responses facilitate direct force sensing and visual detection, paving the way for precise and real-time mechanical force sensing in bulk materials.
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Affiliation(s)
- Nnamdi M Ofodum
- Department of Chemistry and Biomolecular Science, Clarkson University, 8 Clarkson Ave, Potsdam, New York 13699, United States
| | - Qingkai Qi
- Department of Chemistry and Biomolecular Science, Clarkson University, 8 Clarkson Ave, Potsdam, New York 13699, United States
| | - Richard Chandradat
- Department of Chemistry and Biomolecular Science, Clarkson University, 8 Clarkson Ave, Potsdam, New York 13699, United States
| | - Theodore Warfle
- Department of Chemical and Biomolecular Engineering, Clarkson University, 8 Clarkson Ave, Potsdam, New York 13699, United States
| | - Xiaocun Lu
- Department of Chemistry and Biomolecular Science, Clarkson University, 8 Clarkson Ave, Potsdam, New York 13699, United States
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2
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Wang H, Guan Q, Wang X. Theoretical study on pentiptycene molecular brake: photoinduced isomerization and photoinduced electron transfer. J Mol Model 2021; 27:289. [PMID: 34536143 DOI: 10.1007/s00894-021-04900-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 09/01/2021] [Indexed: 11/26/2022]
Abstract
The isomerization of the double bond plays an important role in the braking and de-braking of the light-controlled molecular brake. Therefore, the pentiptycene-type (Pp-type) light-controlled molecular brake system ((E)- and (Z)-4'-pentiptycyl vinyl-[1,1'-biphenyl]-4-carbonitrile) containing the C = C double bond was theoretically studied. Combining the 6-31G(d) basis set, the ωB97XD functional with dispersion correction was applied to implement the (E)-configuration and (Z)-configuration initial optimization. Next, using the 6-311G(d,p) basis set, the relaxed potential energy surface scans of the rotation angle were operated, and then the optimization calculations of the transition states at the extremum high points. Analyzing the stagnation points and the rotational transition states on the potential energy profiles, the rotation mechanism and basic energy parameters of the molecular brake were obtained. Then, the DFT computations at ground states and the TD-DFT computations of vertical excitation energy were put into practice at the accuracy of the def-TZVP basis set for the two configurations, and using the natural transition orbital (NTO) analyses combining the excitation energies and absorption spectra, the electronic transition characteristics and electron transfer properties of light-controlled molecular brake were studied. Afterwards, in order to investigate the photoinduced isomerization reaction, the C = C double bond was scanned on the relaxed potential energy surface, and the intermediates of the isomerization reaction were searched and analyzed; thus, the braking mechanism of the light-controlled molecular brake was proposed.
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Affiliation(s)
- Hailong Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, 411105, People's Republic of China
| | - Qiuping Guan
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, 411105, People's Republic of China
| | - Xueye Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, 411105, People's Republic of China.
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3
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Gisbert Y, Abid S, Kammerer C, Rapenne G. Molecular Gears: From Solution to Surfaces. Chemistry 2021; 27:12019-12031. [PMID: 34131971 DOI: 10.1002/chem.202101489] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Indexed: 01/18/2023]
Abstract
This review highlights the major efforts devoted to the development of molecular gears over the past 40 years, from pioneering covalent bis-triptycyl systems undergoing intramolecular correlated rotation in solution, to the most recent examples of gearing systems anchored on a surface, which allow intermolecular transmission of mechanical power. Emphasis is laid on the different strategies devised progressively to control the architectures of molecular bevel and spur gears, as intramolecular systems in solution or intermolecular systems on surfaces, while aiming at increased efficiency, complexity and functionality.
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Affiliation(s)
- Yohan Gisbert
- CEMES, Université de Toulouse, CNRS, 29, rue Marvig, 31055, Toulouse, France
| | - Seifallah Abid
- CEMES, Université de Toulouse, CNRS, 29, rue Marvig, 31055, Toulouse, France
| | - Claire Kammerer
- CEMES, Université de Toulouse, CNRS, 29, rue Marvig, 31055, Toulouse, France
| | - Gwénaël Rapenne
- CEMES, Université de Toulouse, CNRS, 29, rue Marvig, 31055, Toulouse, France.,Division of Materials Science, Nara Institute of Science and Technology, 8916-5, Nara, Japan
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Jellen MJ, Liepuoniute I, Jin M, Jones CG, Yang S, Jiang X, Nelson HM, Houk KN, Garcia-Garibay MA. Enhanced Gearing Fidelity Achieved Through Macrocyclization of a Solvated Molecular Spur Gear. J Am Chem Soc 2021; 143:7740-7747. [PMID: 33998231 DOI: 10.1021/jacs.1c01885] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Molecular spur gear dynamics with high gearing fidelity can be achieved through a careful selection of constituent molecular components that favorably position and maintain the two gears in a meshed configuration. Here, we report the synthesis of a new macrocyclic molecular spur gear with a bibenzimidazole stator combined with a second naphthyl bis-gold-phosphine gold complex stator to place two 3-fold symmetric 9,10-diethynyl triptycene cogs at the optimal distance of 8.1 Å for gearing. Micro electron diffraction (μED) analysis confirmed the formation of the macrocyclic structure and the proper alignment of the triptycene cogs. Gearing dynamics in solution are predicted to be extremely fast and, in fact, were too fast to be observed with variable-temperature 1H NMR using CD2Cl2 as the solvent. A combination of molecular dynamics and metadynamics simulations predict that the barriers for gearing and slippage are ca. 4 kcal mol-1 and ca. 9 kcal mol-1, respectively. This system is characterized by enhanced gearing fidelity compared to the acyclic analog. This is achieved by rigidification of the structure, locking the two triptycenes in the preferred gearing distance and orientation.
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Affiliation(s)
- Marcus J Jellen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Ieva Liepuoniute
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Mingoo Jin
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Christopher G Jones
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Song Yang
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Xing Jiang
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Hosea M Nelson
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - K N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
| | - Miguel A Garcia-Garibay
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States
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Komiya N, Ikeshita M, Tosaki K, Sato A, Itami N, Naota T. Catalytic Enantioselective Rotation of Watermill‐Shaped Dinuclear Pd Complexes. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202100140] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Naruyoshi Komiya
- Department of Chemistry, Graduate School of Engineering Science Osaka University Machikaneyama, Toyonaka, Osaka 560-8531 Japan
- Chemistry Laboratory The Jikei University School of Medicine Kokuryo, Chofu, Tokyo 182-8570 Japan
| | - Masahiro Ikeshita
- Department of Chemistry, Graduate School of Engineering Science Osaka University Machikaneyama, Toyonaka, Osaka 560-8531 Japan
| | - Koichi Tosaki
- Department of Chemistry, Graduate School of Engineering Science Osaka University Machikaneyama, Toyonaka, Osaka 560-8531 Japan
| | - Atsushi Sato
- Department of Chemistry, Graduate School of Engineering Science Osaka University Machikaneyama, Toyonaka, Osaka 560-8531 Japan
| | - Nao Itami
- Department of Chemistry, Graduate School of Engineering Science Osaka University Machikaneyama, Toyonaka, Osaka 560-8531 Japan
| | - Takeshi Naota
- Department of Chemistry, Graduate School of Engineering Science Osaka University Machikaneyama, Toyonaka, Osaka 560-8531 Japan
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Locke GM, Flanagan KJ, Senge MO. Towards triptycene functionalization and triptycene-linked porphyrin arrays. Beilstein J Org Chem 2020; 16:763-777. [PMID: 32362950 PMCID: PMC7176921 DOI: 10.3762/bjoc.16.70] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 04/07/2020] [Indexed: 11/29/2022] Open
Abstract
Herein, 9,10-diethynyltriptycene is investigated for its use as a rigid isolating unit in the synthesis of multichromophoric arrays. Sonogashira cross-coupling conditions are utilized to attach various porphyrins and boron dipyrromethenes (BODIPYs) to the triptycene scaffold. While there are previous examples of triptycene porphyrin complexes, this work reports the first example of a linearly connected porphyrin dimer, linked through the bridgehead carbons of triptycene. Symmetric and unsymmetric examples of these complexes are demonstrated and single crystal X-ray analysis of an unsymmetrically substituted porphyrin dimer highlights the evident linearity in these systems. Moreover, initial UV-vis and fluorescence studies show the promise of triptycene as a linker for electron transfer studies, showcasing its isolating nature.
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Affiliation(s)
- Gemma M Locke
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, 152–160 Pearse Street, Trinity College Dublin, The University of Dublin, Dublin 2, Ireland
| | - Keith J Flanagan
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, 152–160 Pearse Street, Trinity College Dublin, The University of Dublin, Dublin 2, Ireland
| | - Mathias O Senge
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, 152–160 Pearse Street, Trinity College Dublin, The University of Dublin, Dublin 2, Ireland
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7
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Theoretical design and rotational conformation analysis of molecular bevel gear with triptycene as rotator. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2576-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Dattler D, Fuks G, Heiser J, Moulin E, Perrot A, Yao X, Giuseppone N. Design of Collective Motions from Synthetic Molecular Switches, Rotors, and Motors. Chem Rev 2019; 120:310-433. [PMID: 31869214 DOI: 10.1021/acs.chemrev.9b00288] [Citation(s) in RCA: 237] [Impact Index Per Article: 47.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Precise control over molecular movement is of fundamental and practical importance in physics, biology, and chemistry. At nanoscale, the peculiar functioning principles and the synthesis of individual molecular actuators and machines has been the subject of intense investigations and debates over the past 60 years. In this review, we focus on the design of collective motions that are achieved by integrating, in space and time, several or many of these individual mechanical units together. In particular, we provide an in-depth look at the intermolecular couplings used to physically connect a number of artificial mechanically active molecular units such as photochromic molecular switches, nanomachines based on mechanical bonds, molecular rotors, and light-powered rotary motors. We highlight the various functioning principles that can lead to their collective motion at various length scales. We also emphasize how their synchronized, or desynchronized, mechanical behavior can lead to emerging functional properties and to their implementation into new active devices and materials.
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Affiliation(s)
- Damien Dattler
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
| | - Gad Fuks
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
| | - Joakim Heiser
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
| | - Emilie Moulin
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
| | - Alexis Perrot
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
| | - Xuyang Yao
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
| | - Nicolas Giuseppone
- SAMS Research Group, Institute Charles Sadron, CNRS , University of Strasbourg , 23 rue du Loess , BP 84047, 67034 Strasbourg Cedex 2 , France
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9
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Toyota S, Kawahata K, Sugahara K, Oki T, Iwanaga T. Quadruple and Sextuple Triptycene Gears in Macrocyclic Frameworks. ASIAN J ORG CHEM 2019. [DOI: 10.1002/ajoc.201900421] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Shinji Toyota
- Department of Chemistry, School of ScienceTokyo Institute of Technology 2-12-1 Ookayama, Meguro-ku Tokyo 152-8551 Japan
| | - Kenta Kawahata
- Department of Chemistry, Faculty of ScienceOkayama University of Science 1-1 Ridaicho, Kita-ku Okayama 700-0005 Japan
| | - Kota Sugahara
- Department of Chemistry, Faculty of ScienceOkayama University of Science 1-1 Ridaicho, Kita-ku Okayama 700-0005 Japan
| | - Tomohiro Oki
- Department of Chemistry, Faculty of ScienceOkayama University of Science 1-1 Ridaicho, Kita-ku Okayama 700-0005 Japan
| | - Tetsuo Iwanaga
- Department of Chemistry, Faculty of ScienceOkayama University of Science 1-1 Ridaicho, Kita-ku Okayama 700-0005 Japan
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10
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Locke GM, Bernhard SSR, Senge MO. Nonconjugated Hydrocarbons as Rigid-Linear Motifs: Isosteres for Material Sciences and Bioorganic and Medicinal Chemistry. Chemistry 2019; 25:4590-4647. [PMID: 30387906 DOI: 10.1002/chem.201804225] [Citation(s) in RCA: 122] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2018] [Revised: 10/20/2018] [Indexed: 01/02/2023]
Abstract
Nonconjugated hydrocarbons, like bicyclo[1.1.1]pentane, bicyclo[2.2.2]octane, triptycene, and cubane are a unique class of rigid linkers. Due to their similarity in size and shape they are useful mimics of classic benzene moieties in drugs, so-called bioisosteres. Moreover, they also fulfill an important role in material sciences as linear linkers, in order to arrange various functionalities in a defined spatial manner. In this Review article, recent developments and usages of these special, rectilinear systems are discussed. Furthermore, we focus on covalently linked, nonconjugated linear arrangements and discuss the physical and chemical properties and differences of individual linkers, as well as their application in material and medicinal sciences.
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Affiliation(s)
- Gemma M Locke
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin, 2, Ireland
| | - Stefan S R Bernhard
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin, 2, Ireland
| | - Mathias O Senge
- School of Chemistry, SFI Tetrapyrrole Laboratory, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, 152-160 Pearse Street, Dublin, 2, Ireland
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11
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Nagaoka M, Tsurumaki E, Nishiuchi M, Iwanaga T, Toyota S. Synthesis and Electronic Properties of Length-Defined 9,10-Anthrylene-Butadiynylene Oligomers. J Org Chem 2018; 83:5784-5790. [PMID: 29667411 DOI: 10.1021/acs.joc.8b00311] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Linear π-conjugated oligomers consisting of anthracene and diacetylene units were readily synthesized by a one-pot process that involved desilylation and oxidative coupling from appropriate building units. We were able to isolate length-defined oligomers ranging from 2-mer to 6-mer as stable and soluble solids. The bathochromic shifts in the UV-vis spectra suggested that the π-conjugation was extended with elongation of the linear chain. Cyclic voltammetric measurements showed characteristic reversible oxidation waves that were dependent on the number of anthracene units.
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Affiliation(s)
- Maiko Nagaoka
- Department of Chemistry, School of Science , Tokyo Institute of Technology , 2-12-1 Ookayama , Meguro-ku, Tokyo 152-8551 , Japan
| | - Eiji Tsurumaki
- Department of Chemistry, School of Science , Tokyo Institute of Technology , 2-12-1 Ookayama , Meguro-ku, Tokyo 152-8551 , Japan
| | - Mai Nishiuchi
- Department of Chemistry, Faculty of Science , Okayama University of Science , 1-1 Ridaicho , Kita-ku, Okayama 700-0005 , Japan
| | - Tetsuo Iwanaga
- Department of Chemistry, Faculty of Science , Okayama University of Science , 1-1 Ridaicho , Kita-ku, Okayama 700-0005 , Japan
| | - Shinji Toyota
- Department of Chemistry, School of Science , Tokyo Institute of Technology , 2-12-1 Ookayama , Meguro-ku, Tokyo 152-8551 , Japan
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Ube H, Yamada R, Ishida JI, Sato H, Shiro M, Shionoya M. A Circularly Arranged Sextuple Triptycene Gear Molecule. J Am Chem Soc 2017; 139:16470-16473. [DOI: 10.1021/jacs.7b09439] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hitoshi Ube
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Ryo Yamada
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Jun-ichi Ishida
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Hiroyasu Sato
- Rigaku Corporation, 3-9-12 Matsubaracho, Akishima, Tokyo 196-8666, Japan
| | - Motoo Shiro
- Rigaku Corporation, 3-9-12 Matsubaracho, Akishima, Tokyo 196-8666, Japan
| | - Mitsuhiko Shionoya
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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