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Motojima K, Sen A, Yamada YMA, Kaneko H. Catalyst Design and Feature Engineering to Improve Selectivity and Reactivity in Two Simultaneous Cross-Coupling Reactions. J Chem Inf Model 2023; 63:5764-5772. [PMID: 37655841 DOI: 10.1021/acs.jcim.3c01196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
Highly active catalysts are required in numerous industrial fields; therefore, to minimize costs and development time, catalyst design using machine learning has attracted significant attention. This study focused on a reaction system where two types of cross-coupling reactions, namely, Buchwald-Hartwig type cross-coupling (BHCC) and Suzuki-Miyaura type cross-coupling (SMCC) reactions, occur simultaneously. Constructing a machine-learning model that considers all experimental conditions is essential to accurately predict the product yield for both the BHCC and the SMCC reactions. The objective of this study was to establish explanatory variables x that considered all experimental conditions within the reaction system involving simultaneous cross-couplings and to design catalysts that achieve the target yield and the development of novel reactions. To accomplish this, Bayesian optimization was combined with established variables x to design new catalysts and enhance reaction selectivity. Moreover, the catalyst design in this study successfully pioneered new reactions involving Cu, Rh, and Pt catalysts in a reaction system that did not previously react with transition metals other than Ni or Pd.
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Affiliation(s)
- Kohei Motojima
- Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan
| | - Abhijit Sen
- RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Yoichi M A Yamada
- RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Hiromasa Kaneko
- Department of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan
- RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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2
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Langer P. Palladium-Catalyzed Synthesis of Heterocyclic Ring Systems by Combination of Regioselective C–C with Twofold C–N Couplings. Synlett 2022. [DOI: 10.1055/s-0040-1719918] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
AbstractThe combination of regioselective palladium-catalyzed C–C with twofold C–N couplings allows for the synthesis of a variety of heterocyclic ring systems. Starting materials include thiophenes and benzothiophenes, pyrroles and indoles, furans and benzofurans, pyridines, quinolines and quinoxalines, complex heterocyclic systems and benzophenone derivatives. The products are in many cases complex polyheterocyclic systems, which are not readily available by other methods or, in a number of cases, were not described in the literature before. They are of pharmacological relevance or interesting in the field of material science. Products include thieno[3,2-b:4,5-b′]diindoles, thieno[3,2-b]indoles, thieno[3,4-b]indoles, 5,10-dihydroindolo[3,2-b]indoles, furo[3,2-b:4,5-b′]diindoles, benzo[4,5]furo[3,2-b]indoles, 5,7-dihydropyrido[3,2-b:5,6-b′]diindoles, 5,7-dihydropyrido[2,3-b:6,5-b´]diindoles, α-, β-, γ- and δ-carbolines, indolo[3,2-b]quinolines, indolo[2,3-b]quinolines, indolo[3,2-c]quinolines, indoloquinoxalines, pyrido[2′,1′:2,3]imidazo[4,5-b]indoles, thiadiazolo[2′,3′:2,3]imidazo[4,5-b]indoles, benzo[b]carbazolediones, acridones and thieno[3,2-b]quinolones.Contents1 Introduction2 Thiophenes and Benzothiophenes3 Pyrroles and Indoles4 Furans and Benzofurans5 Pyridines6 Quinolines and Quinoxalines7 Complex Heterocyclic Systems8 2,3-Dibromonaphthoquinone9 Benzophenone Derivatives10 Conclusions
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Affiliation(s)
- Peter Langer
- Institut für Chemie, Universität Rostock
- Leibniz-Institut für Katalyse an der Universität Rostock e. V
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3
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Ebi T, Sen A, Dhital RN, Yamada YMA, Kaneko H. Design of Experimental Conditions with Machine Learning for Collaborative Organic Synthesis Reactions Using Transition-Metal Catalysts. ACS OMEGA 2021; 6:27578-27586. [PMID: 34693179 PMCID: PMC8529890 DOI: 10.1021/acsomega.1c04826] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Accepted: 09/28/2021] [Indexed: 06/13/2023]
Abstract
To improve product yields in synthetic reactions, it is important to use appropriate catalysts. In this study, we used machine learning to design catalysts for a reaction system in which both Buchwald-Hartwig-type and Suzuki-Miyaura-type cross-coupling reactions proceed simultaneously. First, using an existing dataset, yield prediction models were constructed with machine learning between experimental conditions, including the substrate and catalyst and the yields of the two products. Seven methods for calculating both the substrate and catalyst descriptors were proposed, and the predictive ability of the yield prediction models was discussed in terms of the descriptors and machine learning methods. Then, the constructed models were used to predict the compound yields for new combinations of substrates and catalysts, and the predictions were experimentally validated with high reproducibility, confirming that machine learning can predict yields from experimental conditions with high accuracy. In addition, to design catalysts that will improve the yields in our dataset, we added datasets collected from scientific papers and designed catalyst ligands. The proposed catalyst candidates were tested in actual synthetic experiments, and the experimental results exceeded the existing yields.
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Affiliation(s)
- Tomoya Ebi
- Department
of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan
| | - Abhijit Sen
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Raghu N. Dhital
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Yoichi M. A. Yamada
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Hiromasa Kaneko
- Department
of Applied Chemistry, School of Science and Technology, Meiji University, 1-1-1 Higashi-Mita, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan
- RIKEN
Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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4
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Buchwald–Hartwig reaction: an update. MONATSHEFTE FUR CHEMIE 2021. [DOI: 10.1007/s00706-021-02834-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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5
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Palladium-catalyzed highly regioselective Buchwald-Hartwig amination of 5-substituted-1,2,3-triiodobenzene: Facile synthesis of 2,3-diiodinated N-arylanilines as potential anti-inflammatory candidates. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.121786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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6
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Seifinoferest B, Tanbakouchian A, Larijani B, Mahdavi M. Ullmann‐Goldberg and Buchwald‐Hartwig C−N Cross Couplings: Synthetic Methods to Pharmaceutically Potential N‐Heterocycles. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100072] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Behnoush Seifinoferest
- Endocrinology and Metabolism Research Centre Tehran University of Medical Sciences University of Tehran Nejatollahi St Enghelab St Iran
| | - Arezoo Tanbakouchian
- Department of Chemistry, College of Chemistry University of Tehran 16 Azar St Enghelab St Iran
| | - Bagher Larijani
- Endocrinology and Metabolism Research Centre Tehran University of Medical Sciences University of Tehran Nejatollahi St Enghelab St Iran
| | - Mohammad Mahdavi
- Endocrinology and Metabolism Research Centre Tehran University of Medical Sciences University of Tehran Nejatollahi St Enghelab St Iran
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7
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Gouda MA, Abu‐Hashem AA, Abdelgawad AAM. Recent progress on the chemistry of thieno[3,2‐
b
]quinoline derivatives (part
III
). J Heterocycl Chem 2020. [DOI: 10.1002/jhet.4205] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Moustafa A. Gouda
- Department of Chemistry, Faculty of Science and Arts Taibah University Medina Saudi Arabia
- Department of Chemistry, Faculty of Science Mansoura University Mansoura Egypt
| | - Ameen A. Abu‐Hashem
- Photochemistry Department (Heterocyclic Unit) National Research Centre Giza Egypt
- Chemistry Department, Faculty of Science Jazan University Jazan Saudi Arabia
| | - Ahmed A. M. Abdelgawad
- Chemistry Department, Faculty of Science Jazan University Jazan Saudi Arabia
- Medicinal and Aromatic Plants Department Desert Research Center Cairo Egypt
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8
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Wilders AM, Henle J, Haibach MC, Swiatowiec R, Bien J, Henry RF, Asare SO, Wall AL, Shekhar S. Pd-Catalyzed Cross-Coupling of Hindered, Electron-Deficient Anilines with Bulky (Hetero)aryl Halides Using Biaryl Phosphorinane Ligands. ACS Catal 2020. [DOI: 10.1021/acscatal.0c04280] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Alison M. Wilders
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Jeremy Henle
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Michael C. Haibach
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Rafal Swiatowiec
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Jeffrey Bien
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Rodger F. Henry
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Shardrack O. Asare
- Analytical Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Amanda L. Wall
- Analytical Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
| | - Shashank Shekhar
- Process Research and Development, AbbVie Inc., 1 North Waukegan Road, North Chicago, Illinois 60064, United States
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