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Rodríguez Saravia M, Martínez V, Vairoletti F, Macías M, Davyt D, Hernández Dossi G, Mahler G. Novel enantiopure δ-thiolactones: synthesis, structural characterization, and reactivity studies. RSC Adv 2024; 14:40287-40298. [PMID: 39720259 PMCID: PMC11667218 DOI: 10.1039/d4ra07780f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Accepted: 12/13/2024] [Indexed: 12/26/2024] Open
Abstract
A new series of chiral δ-thiolactone derivatives have been prepared. These compounds exemplify the acetalic N-C-S reversibility of fused thiazolidines toward the thermodynamic product. The stereochemistry of the synthesized compounds was elucidated using X-ray crystallography, NOESY spectroscopy, and DFT calculations. The aminolysis reaction of the δ-thiolactone was studied with various alkyl amines, which can open the thioester to yield amido thiols in a single step. This reaction has the potential to be applied in the synthesis of bioactive compounds, polymer chemistry, and dynamic combinatorial chemistry, among others fields.
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Affiliation(s)
- Magdalena Rodríguez Saravia
- Departamento de Química Orgánica, Laboratorio de Química Farmacéutica, Facultad de Quimica, Universidad de la República Gral Flores 2124 Montevideo 11800 Uruguay
- Programa de Posgrado en Quimica, Universidad de la República Uruguay Gral Flores 2124 Montevideo 11800 Uruguay
| | - Verónica Martínez
- Departamento de Química Orgánica, Laboratorio de Química Farmacéutica, Facultad de Quimica, Universidad de la República Gral Flores 2124 Montevideo 11800 Uruguay
| | - Franco Vairoletti
- Departamento de Química Orgánica, Laboratorio de Química Farmacéutica, Facultad de Quimica, Universidad de la República Gral Flores 2124 Montevideo 11800 Uruguay
- Programa de Posgrado en Quimica, Universidad de la República Uruguay Gral Flores 2124 Montevideo 11800 Uruguay
| | - Mario Macías
- Cristalografía y Química de Materiales, CrisQuimMat, Departamento de Química, Universidad de los Andes Carrera 1 No. 18A-10 Bogotá 111711 Colombia
| | - Danilo Davyt
- Departamento de Química Orgánica, Laboratorio de Química Farmacéutica, Facultad de Quimica, Universidad de la República Gral Flores 2124 Montevideo 11800 Uruguay
| | - Gonzalo Hernández Dossi
- Departamento de Química Orgánica, Laboratorio de Resonancia Magnética Nuclear, Facultad de Química, Universidad de la República Gral Flores 2124 Montevideo 11800 Uruguay
| | - Graciela Mahler
- Departamento de Química Orgánica, Laboratorio de Química Farmacéutica, Facultad de Quimica, Universidad de la República Gral Flores 2124 Montevideo 11800 Uruguay
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Villamil V, Rossi MA, Mojica MF, Hinchliffe P, Martínez V, Castillo V, Saiz C, Banchio C, Macías MA, Spencer J, Bonomo RA, Vila A, Moreno DM, Mahler G. Rational Design of Benzobisheterocycle Metallo-β-Lactamase Inhibitors: A Tricyclic Scaffold Enhances Potency against Target Enzymes. J Med Chem 2024; 67:3795-3812. [PMID: 38373290 PMCID: PMC11447740 DOI: 10.1021/acs.jmedchem.3c02209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
Antimicrobial resistance is a global public health threat. Metallo-β-lactamases (MBLs) inactivate β-lactam antibiotics, including carbapenems, are disseminating among Gram-negative bacteria, and lack clinically useful inhibitors. The evolving bisthiazolidine (BTZ) scaffold inhibits all three MBL subclasses (B1-B3). We report design, synthesis, and evaluation of BTZ analogues. Structure-activity relationships identified the BTZ thiol as essential, while carboxylate is replaceable, with its removal enhancing potency by facilitating hydrophobic interactions within the MBL active site. While the introduction of a flexible aromatic ring is neutral or detrimental for inhibition, a rigid (fused) ring generated nM benzobisheterocycle (BBH) inhibitors that potentiated carbapenems against MBL-producing strains. Crystallography of BBH:MBL complexes identified hydrophobic interactions as the basis of potency toward B1 MBLs. These data underscore BTZs as versatile, potent broad-spectrum MBL inhibitors (with activity extending to enzymes refractory to other inhibitors) and provide a rational approach to further improve the tricyclic BBH scaffold.
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Affiliation(s)
- Valentina Villamil
- Laboratorio de Química Farmacéutica, Departamento de Química Orgánica, Facultad de Química, Universidad de la República (UdelaR), Avda. General Flores 2124, Montevideo, Uruguay
| | - Maria-Agustina Rossi
- Instituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo and Esmeralda, S2002LRK, Rosario, Argentina
| | - Maria F. Mojica
- Infectious Diseases Department, School of Medicine, Case Western Reserve University, 44106, Cleveland, OH, USA
| | - Philip Hinchliffe
- School of Cellular and Molecular Medicine, University of Bristol, Biomedical Sciences Building, University Walk, BS8 1TD, Bristol, UK
| | - Verónica Martínez
- Laboratorio de Química Farmacéutica, Departamento de Química Orgánica, Facultad de Química, Universidad de la República (UdelaR), Avda. General Flores 2124, Montevideo, Uruguay
| | - Valerie Castillo
- Laboratorio de Química Farmacéutica, Departamento de Química Orgánica, Facultad de Química, Universidad de la República (UdelaR), Avda. General Flores 2124, Montevideo, Uruguay
| | - Cecilia Saiz
- Laboratorio de Química Farmacéutica, Departamento de Química Orgánica, Facultad de Química, Universidad de la República (UdelaR), Avda. General Flores 2124, Montevideo, Uruguay
| | - Claudia Banchio
- Instituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo and Esmeralda, S2002LRK, Rosario, Argentina
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, S2002LRK, Rosario, Argentina
| | - Mario A. Macías
- Crystallography and Chemistry of Materials, CrisQuimMat, Department of Chemistry, Universidad de los Andes, 111711, Bogotá, Colombia
| | - James Spencer
- School of Cellular and Molecular Medicine, University of Bristol, Biomedical Sciences Building, University Walk, BS8 1TD, Bristol, UK
| | - Robert A. Bonomo
- Infectious Diseases Department, School of Medicine, Case Western Reserve University, 44106, Cleveland, OH, USA
- Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, 44106, Cleveland, OH, USA
- Departments of Medicine, Pharmacology, Molecular Biology and Microbiology, Biochemistry, and Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, 44106, Cleveland, OH, USA
- Medical Service, GRECC, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, 44106, Cleveland, OH, USA
- CWRU-Cleveland VAMC Center for Antimicrobial Resistance and Epidemiology (Case VA CARES), 44106, Cleveland, OH, USA
| | - Alejandro Vila
- Instituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo and Esmeralda, S2002LRK, Rosario, Argentina
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, S2002LRK, Rosario, Argentina
- Medical Service, GRECC, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, 44106, Cleveland, OH, USA
| | - Diego M. Moreno
- Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, S2002LRK, Rosario, Argentina
- Instituto de Química Rosario (IQUIR, CONICET-UNR), Ocampo y Esmeralda, S2002LRK, Rosario, Argentina
| | - Graciela Mahler
- Laboratorio de Química Farmacéutica, Departamento de Química Orgánica, Facultad de Química, Universidad de la República (UdelaR), Avda. General Flores 2124, Montevideo, Uruguay
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Villamil V, Vairoletti F, Tijman A, López G, Peixoto de Abreu Lima A, Saiz C, Iglesias C, Mahler G. Novel Kinetic Resolution of Thiazolo-Benzimidazolines Using MAO Enzymes. ACS OMEGA 2023; 8:42114-42125. [PMID: 38024698 PMCID: PMC10652373 DOI: 10.1021/acsomega.3c03223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 10/06/2023] [Accepted: 10/10/2023] [Indexed: 12/01/2023]
Abstract
The kinetic resolution of racemic 1H,3H-thiazolo[3,4-a]benzimidazoline (TBIM) heterocycles was achieved using E. coli whole cells expressing the MAO-N D11 enzyme. Several cosolvents were screened using TBIM 2a as the substrate. DMF was the best cosolvent, affording the pure enantiomer (+)-2a in 44% yield, 94% ee. The stereochemistry of TBIM was predicted by means of ab initio calculations of optical rotation and circular dichroism spectra. The reaction scope was investigated for 11 substituted (±) TBIM using an optimized protocol. The best yield and % ee were obtained for the nonsubstituted 2a. Among the substituted compounds, the 5-substituted-TBIM showed better % ee than the 4-substituted one. The small electron donor group (Me) led to better % ee than the electron-withdrawing groups (-NO2 and -CO2Et), and the bulky naphthyl group was detrimental for the kinetic resolution. Docking experiments and molecular dynamics (MD) simulations were employed to further understand the interactions between MAO-N D11 and the thiazolo-benzimidazoline substrates. For 2a, the MD showed favorable positioning and binding energy for both enantiomers, thus suggesting that this kinetic resolution is influenced not only by the active site but also by the entry tunnel. This work constitutes the first report of the enzymatic kinetic resolution applied to TBIM heterocycles.
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Affiliation(s)
- Valentina Villamil
- Departamento
de Química Orgánica, Laboratorio de Quimica Farmaceutica,
Facultad de Quimica, Universidad de la República, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - Franco Vairoletti
- Departamento
de Química Orgánica, Laboratorio de Quimica Farmaceutica,
Facultad de Quimica, Universidad de la República, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
- Programa
de Posgrado en Quimica, Universidad de la
República Uruguay, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - Ariel Tijman
- Programa
de Posgrado en Quimica, Universidad de la
República Uruguay, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
- Departamento
de Biociencias, Laboratorio de Microbiología Molecular, Facultad
de Quimica, Universidad de la Republica, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
- Departamento
de Biociencias y Departamento de Quimica Organica, Laboratorio de
Biocatalisis y Biotransformaciones, Facultad de Quimica, Universidad de la Republica, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - Gonzalo López
- Programa
de Posgrado en Quimica, Universidad de la
República Uruguay, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
- Departamento
de Biociencias, Laboratorio de Microbiología Molecular, Facultad
de Quimica, Universidad de la Republica, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
- Departamento
de Biociencias y Departamento de Quimica Organica, Laboratorio de
Biocatalisis y Biotransformaciones, Facultad de Quimica, Universidad de la Republica, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - Alejandro Peixoto de Abreu Lima
- Departamento
de Química Orgánica, Laboratorio de Síntesis
Orgánica, Facultad de Quimica, Universidad
de la Republica, Gral
Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - Cecilia Saiz
- Departamento
de Química Orgánica, Laboratorio de Quimica Farmaceutica,
Facultad de Quimica, Universidad de la República, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - César Iglesias
- Departamento
de Biociencias, Laboratorio de Microbiología Molecular, Facultad
de Quimica, Universidad de la Republica, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
- Departamento
de Biociencias y Departamento de Quimica Organica, Laboratorio de
Biocatalisis y Biotransformaciones, Facultad de Quimica, Universidad de la Republica, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
| | - Graciela Mahler
- Departamento
de Química Orgánica, Laboratorio de Quimica Farmaceutica,
Facultad de Quimica, Universidad de la República, Gral Flores 2124, Montevideo, Montevideo 11800, Uruguay
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A new procedure for thioester deprotection using thioglycolic acid in both homogeneous and heterogeneous phase. Tetrahedron 2021; 94. [PMID: 34744193 DOI: 10.1016/j.tet.2021.132335] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Classic acetyl thioester protection/deprotection methodologies are widely used in organic synthesis, but deprotection step usually requires harsh conditions not suitable for labile substrates. In this work, a new method for thioester deprotection using a thiotransesterification approach is described. Firstly, thioglycolic acid (TGA) was identified as a good deprotecting reagent in solution. In order to develop a thiol polymer-supported reagent, TGA was anchored to a PEG-based resin through an amide bond (TG-NCO-SH). Both homogeneous and heterogeneous approaches were conveniently carried out at room temperature, in aqueous buffer at pH 8. The mild conditions were suitable for alkyl and phenyl thioesters. Moreover labile thioesters containing thiazolidine and oxazolidine scaffolds, bearing amine, ester and acetal functionalities were also deprotected. The polymer-supported TGA gave better deprotection yields compared to TGA in solution, yields ranging from 61 to 90%. The feasibility of the recovery and reuse of TG-NCO-SH reagent was explored, showing it can be reused at least five times without lossing the activity.
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