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Diogo MA, Cabral AGT, de Oliveira RB. Advances in the Search for SARS-CoV-2 M pro and PL pro Inhibitors. Pathogens 2024; 13:825. [PMID: 39452697 PMCID: PMC11510351 DOI: 10.3390/pathogens13100825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Revised: 09/19/2024] [Accepted: 09/22/2024] [Indexed: 10/26/2024] Open
Abstract
SARS-CoV-2 is a spherical, positive-sense, single-stranded RNA virus with a large genome, responsible for encoding both structural proteins, vital for the viral particle's architecture, and non-structural proteins, critical for the virus's replication cycle. Among the non-structural proteins, two cysteine proteases emerge as promising molecular targets for the design of new antiviral compounds. The main protease (Mpro) is a homodimeric enzyme that plays a pivotal role in the formation of the viral replication-transcription complex, associated with the papain-like protease (PLpro), a cysteine protease that modulates host immune signaling by reversing post-translational modifications of ubiquitin and interferon-stimulated gene 15 (ISG15) in host cells. Due to the importance of these molecular targets for the design and development of novel anti-SARS-CoV-2 drugs, the purpose of this review is to address aspects related to the structure, mechanism of action and strategies for the design of inhibitors capable of targeting the Mpro and PLpro. Examples of covalent and non-covalent inhibitors that are currently being evaluated in preclinical and clinical studies or already approved for therapy will be also discussed to show the advances in medicinal chemistry in the search for new molecules to treat COVID-19.
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Affiliation(s)
| | | | - Renata Barbosa de Oliveira
- Departamento de Produtos Farmacêuticos, Faculdade de Farmácia, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, Brazil; (M.A.D.); (A.G.T.C.)
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2
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Lee K, Kim YA, Jung C, Sim J, Rajasekar S, Kwak JH, Viji M, Jung JK. Microwave-Mediated, Catalyst-Free Synthesis of 1,2,4-Triazolo[1,5- a]pyridines from Enaminonitriles. Molecules 2024; 29:894. [PMID: 38398645 PMCID: PMC10892893 DOI: 10.3390/molecules29040894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 02/02/2024] [Accepted: 02/13/2024] [Indexed: 02/25/2024] Open
Abstract
A catalyst-free, additive-free, and eco-friendly method for synthesizing 1,2,4-triazolo[1,5-a]pyridines under microwave conditions has been established. This tandem reaction involves the use of enaminonitriles and benzohydrazides, a transamidation mechanism followed by nucleophilic addition with nitrile, and subsequent condensation to yield the target compound in a short reaction time. The methodology demonstrates a broad substrate scope and good functional group tolerance, resulting in the formation of products in good-to-excellent yields. Furthermore, the scale-up reaction and late-stage functionalization of triazolo pyridine further demonstrate its synthetic utility. A plausible reaction pathway, based on our findings, has been proposed.
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Affiliation(s)
| | | | | | | | | | | | - Mayavan Viji
- College of Pharmacy and Medicinal Research Center (MRC), Chungbuk National University, Cheongju 28160, Republic of Korea; (K.L.); (Y.-A.K.); (C.J.); (J.S.); (S.R.); (J.-H.K.)
| | - Jae-Kyung Jung
- College of Pharmacy and Medicinal Research Center (MRC), Chungbuk National University, Cheongju 28160, Republic of Korea; (K.L.); (Y.-A.K.); (C.J.); (J.S.); (S.R.); (J.-H.K.)
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3
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Thiyagarajan S, Diskin-Posner Y, Montag M, Milstein D. Manganese-catalyzed base-free addition of saturated nitriles to unsaturated nitriles by template catalysis. Chem Sci 2024; 15:2571-2577. [PMID: 38362414 PMCID: PMC10866344 DOI: 10.1039/d3sc04935c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 01/08/2024] [Indexed: 02/17/2024] Open
Abstract
The coupling of mononitriles into dinitriles is a desirable strategy, given the prevalence of nitrile compounds and the synthetic and industrial utility of dinitriles. Herein, we present an atom-economical approach for the heteroaddition of saturated nitriles to α,β- and β,γ-unsaturated mononitriles to generate glutaronitrile derivatives using a catalyst based on earth-abundant manganese. A broad range of such saturated and unsaturated nitriles were found to undergo facile heteroaddition with excellent functional group tolerance, in a reaction that proceeds under mild and base-free conditions using low catalyst loading. Mechanistic studies showed that this unique transformation takes place through a template-type pathway involving an enamido complex intermediate, which is generated by addition of a saturated nitrile to the catalyst, and acts as a nucleophile for Michael addition to unsaturated nitriles. This work represents a new application of template catalysis for C-C bond formation.
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Affiliation(s)
- Subramanian Thiyagarajan
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Yael Diskin-Posner
- Department of Chemical Research Support, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Michael Montag
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot 7610001 Israel
| | - David Milstein
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot 7610001 Israel
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4
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Cui SQ, Zhang DB, Wei ZL, Liao WW. Construction of Functionalized α-Imino Ketones via Pd-Catalyzed C-H Addition to Nitriles/Aerobic Oxidation Sequences. J Org Chem 2023; 88:16018-16023. [PMID: 37930958 DOI: 10.1021/acs.joc.3c01934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Pd(II)-catalyzed addition of sp2 C-H to nitrile/aerobic oxidation sequences for the preparation of functionalized α-imino ketones is described in which readily available heteroarenes and O-acyl cyanohydrins were employed. Various functionalized targeted molecules can be prepared in good yields with high atom and step economy. Moreover, a broad substrate scope and the ready manipulation and availability of the reaction partners enable this protocol to be appealing to explore the chemical space of the construction of functionalized α-imino ketones with high efficiency.
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Affiliation(s)
- Shu-Qiang Cui
- Department of Organic Chemistry, College of Chemistry, Jilin University, 2699 Qianjin Street, Changchun 130012, P R China
| | - Dian-Bo Zhang
- Department of Organic Chemistry, College of Chemistry, Jilin University, 2699 Qianjin Street, Changchun 130012, P R China
| | - Zhong-Lin Wei
- Department of Organic Chemistry, College of Chemistry, Jilin University, 2699 Qianjin Street, Changchun 130012, P R China
| | - Wei-Wei Liao
- Department of Organic Chemistry, College of Chemistry, Jilin University, 2699 Qianjin Street, Changchun 130012, P R China
- State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, P R China
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5
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Mkrtchyan S, Shkoor M, Sarfaraz S, Ayub K, Iaroshenko VO. Mechanochemical arylative detrifluoromethylation of trifluoromethylarenes. Org Biomol Chem 2023; 21:6549-6555. [PMID: 37523214 DOI: 10.1039/d3ob00787a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/01/2023]
Abstract
The stoichiometric defluorinative functionalization of ArCF3 is a conceptually appealing research target. It enables the challenging late-stage functionalization of CF3-containing aromatic molecules and contributes to the remedy of environmental risks resulting from the accumulation of relatively inert ArCF3-containing molecules. Similarly, Ar-CN bond features limit their utilization in cross-coupling reactions. Thus, the employment of benzonitriles in decyanative Suzuki-Miyaura type coupling remains in high demand in the field of C-C bond formation. Herein, we report mechanochemically induced and ytterbium oxide (Yb2O3)-mediated defluorinative cyanation of trifluoromethylarenes. In addition, we describe a facile mechanochemically facilitated and nickel-catalyzed decyanative arylation of benzonitriles to access biphenyls. Combining both processes in a one-pot multicomponent protocol to achieve a concise direct arylative detrifluoromethylation of ArCF3 is described herein. This work is the first hitherto realization of C-C coupling with CF3 as a formal leaving group.
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Affiliation(s)
- Satenik Mkrtchyan
- Department of Chemistry, Faculty of Natural Sciences, Matej Bel University, Tajovského 40, 97401, Banska Bystrica, Slovakia.
| | - Mohanad Shkoor
- Department of Chemistry and Earth Sciences, Qatar University, P.O. Box 2713, Doha, Qatar
| | - Sehrish Sarfaraz
- Department of Chemistry, COMSATS University, Abbottabad Campus, Abbottabad, KPK, 22060, Pakistan
| | - Khurshid Ayub
- Department of Chemistry, COMSATS University, Abbottabad Campus, Abbottabad, KPK, 22060, Pakistan
| | - Viktor O Iaroshenko
- Department of Chemistry, Faculty of Natural Sciences, Matej Bel University, Tajovského 40, 97401, Banska Bystrica, Slovakia.
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6
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Seo YJ, Kim E, Oh IS, Hyun JY, Song JH, Lim HJ, Park SJ. Intramolecular cyclization of N-cyano sulfoximines by N-CN bond activation. RSC Adv 2023; 13:24445-24449. [PMID: 37583669 PMCID: PMC10424563 DOI: 10.1039/d3ra04208a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 08/04/2023] [Indexed: 08/17/2023] Open
Abstract
Metal-free halogenated anhydrides promote the intramolecular cyclization of N-cyano sulfoximines. Trifluoro- or trichloroacetic anhydride (TFAA or TCAA, respectively) activate the N-cyano groups of N-cyano sulfoximines, leading to the intramolecular cyclization of 2-benzamide-N-cyano sulfoximines 1. This method results in excellent yields of thiadiazinone 1-oxides 2. A full intramolecular cyclization pattern was suggested by (i) labeling experiments with 13C, (ii) isolating of N-trifluoroacetyl sulfoximine 1ac, and (iii) confirming the generation of the intermediate 1ad by LC/MS analysis.
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Affiliation(s)
- Ye Ji Seo
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Pharmaceutical Chemistry, University of Science & Technology Daejeon 34113 Republic of Korea
| | - Eunsil Kim
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Department of Chemistry, Sogang University 35 Baekbeom-ro, Mapo-gu Seoul 04107 Republic of Korea
| | - In Seok Oh
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Department of Chemistry, Sogang University 35 Baekbeom-ro, Mapo-gu Seoul 04107 Republic of Korea
| | - Ji Young Hyun
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Pharmaceutical Chemistry, University of Science & Technology Daejeon 34113 Republic of Korea
| | - Ji Ho Song
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Pharmaceutical Chemistry, University of Science & Technology Daejeon 34113 Republic of Korea
| | - Hwan Jung Lim
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Pharmaceutical Chemistry, University of Science & Technology Daejeon 34113 Republic of Korea
| | - Seong Jun Park
- Department of Drug Discovery, Korea Research Institute of Chemical Technology (KRICT) 141 Gajeong-ro, Yuseong-gu Daejeon 34114 Republic of Korea +82 42 860 7160 +82 42 860 7175
- Pharmaceutical Chemistry, University of Science & Technology Daejeon 34113 Republic of Korea
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Gu G, Yue Y, Wang C, Zhang W, Wu J, Li Y, Zhao Y. Chiral Discrimination of Nitrile Compounds Using a 19F-Labeled Palladium Probe. Org Lett 2023. [PMID: 37378527 DOI: 10.1021/acs.orglett.3c01525] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2023]
Abstract
This study presents a 19F-labeled cyclopalladium probe for the rapid discrimination of chiral nitriles in pharmaceuticals, natural products, and agrochemicals. The probe binds reversibly to chiral nitriles, generating distinct 19F nuclear magnetic resonance signals for each enantiomer and enabling quick determination of enantiocomposition. The method allows for simultaneous detection of seven pairs of enantiomeric nitriles and application in assessing the enantiomeric excess of an asymmetric C-H cyanation reaction.
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Affiliation(s)
- Guangxing Gu
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, 333 Longteng Road, Shanghai 201620, People's Republic of China
- Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, People's Republic of China
| | - Yue Yue
- Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, People's Republic of China
| | - Chenyang Wang
- Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, People's Republic of China
| | - Wei Zhang
- Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, People's Republic of China
| | - Jian Wu
- Instrumental Analysis Center, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, People's Republic of China
| | - Ya Li
- College of Chemistry and Chemical Engineering, Shanghai University of Engineering Science, 333 Longteng Road, Shanghai 201620, People's Republic of China
| | - Yanchuan Zhao
- Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, University of Chinese Academy of Sciences, Chinese Academy of Sciences, 345 Ling-Ling Road, Shanghai 200032, People's Republic of China
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Anchi A, Sutar SM, Kalkhambkar RG, Borosky GL, Laali KK. Tropylium‐BF
4
as Organocatalyst for Efficient Synthesis of Nitriles from Aldoximes; Synthetic Scope and Mechanistic Insights. ChemistrySelect 2022. [DOI: 10.1002/slct.202202791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Athmanand Anchi
- Department of Chemistry Karnatak University's Karnatak Science College Dharwad Karnatak 580001 India
| | - Suraj M. Sutar
- Department of Chemistry Karnatak University's Karnatak Science College Dharwad Karnatak 580001 India
| | - Rajesh G. Kalkhambkar
- Department of Chemistry Karnatak University's Karnatak Science College Dharwad Karnatak 580001 India
| | - Gabriela L. Borosky
- INFIQC CONICET and Departamento de Química Teórica y Computacional Facultad de Ciencias Químicas Universidad Nacional de Córdoba, Ciudad Universitaria Córdoba 5000 Argentina
| | - Kenneth K. Laali
- Department of Chemistry University of North Florida, 1 UNF Drive Jacksonville Florida 32224 USA
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9
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Bao L, Liu C, Li W, Yu J, Wang M, Zhang Y. Electrochemical Synthesis of Polysubstituted Oxazoles from Ketones and Acetonitrile. Org Lett 2022; 24:5762-5766. [PMID: 35912587 DOI: 10.1021/acs.orglett.2c02252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Herein we report an electrochemical strategy for the construction of polysubstituted oxazoles from easily available ketones and acetonitrile under room temperature. The method shows high efficiency, a broad substrate scope, and requires no external chemical oxidant. Mechanistic investigations suggest that the reaction proceeds through a Ritter-type reaction/oxidative cyclization using acetonitrile as the reactant and solvent. X-ray crystallographic analysis reveals that the reaction involves the attack of acetonitrile on the carbonyl carbon instead of the α-carbon.
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Affiliation(s)
- Liang Bao
- Department of Chemistry, China Agricultural University, Beijing 100193, P. R. China
| | - Chen Liu
- Department of Chemistry, China Agricultural University, Beijing 100193, P. R. China
| | - Wenyi Li
- Department of Chemistry, China Agricultural University, Beijing 100193, P. R. China
| | - Jiage Yu
- Department of Chemistry, China Agricultural University, Beijing 100193, P. R. China
| | - Min Wang
- Department of Chemistry, China Agricultural University, Beijing 100193, P. R. China
| | - Yunfei Zhang
- Department of Chemistry, China Agricultural University, Beijing 100193, P. R. China
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10
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Gimeno-Prat A, Martín A, Baya M, Casas JM. Trans‐Amidate Platinum Complexes anchoring Water and N‐donor Molecules. The Importance of Hydrogen Bonding. Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202200163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Antonio Martín
- CSIC: Consejo Superior de Investigaciones Cientificas Química Inorgánica SPAIN
| | - Miguel Baya
- Universidad de Zaragoza Facultad de Ciencias Química Inorgánica C/. Pedro Cerbuna 12 50009 Zaragoza SPAIN
| | - José M. Casas
- Universidad de Zaragoza Facultad de Ciencias Química Inorgánica SPAIN
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11
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Rys EG, Alpatova VM, Kononova EG, Smol’yakov AF, Moiseev SK, Ol'shevskaya VA. Employment of Michael addition reactions for the functionalization of carboranes. NEW J CHEM 2022. [DOI: 10.1039/d2nj03509j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Triton B-catalyzed Michael reaction as a green chemistry process was used for the functionalization of carbon- and boron-substituted carboranes with α,β-unsaturated nitriles and esters.
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Affiliation(s)
- Evgeny G. Rys
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28, bld. 1 Vavilova St., 119334 Moscow, Russian Federation
| | - Victoria M. Alpatova
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28, bld. 1 Vavilova St., 119334 Moscow, Russian Federation
| | - Elena G. Kononova
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28, bld. 1 Vavilova St., 119334 Moscow, Russian Federation
| | - Alexander F. Smol’yakov
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28, bld. 1 Vavilova St., 119334 Moscow, Russian Federation
- Plekhanov Russian University of Economics, Stremyanny per. 36, 117997 Moscow, Russian Federation
| | - Sergey K. Moiseev
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28, bld. 1 Vavilova St., 119334 Moscow, Russian Federation
| | - Valentina A. Ol'shevskaya
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28, bld. 1 Vavilova St., 119334 Moscow, Russian Federation
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