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Oliveira JES, Araújo AP, Alves AS, Silva MWF, Almeida JPBD, Nascimento JAM, Dos Santos VB, Oliveira SCB. Simultaneous voltammetric determination of 7-methyl-guanine and 5-methyl-cytosine using a cathodically pre-treated boron-doped diamond electrode. Anal Biochem 2023; 671:115135. [PMID: 37019253 DOI: 10.1016/j.ab.2023.115135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Revised: 03/07/2023] [Accepted: 03/23/2023] [Indexed: 04/05/2023]
Abstract
Given the importance of identifying the presence of biomarkers of human diseases in DNA samples, the main objective of this work was to investigate, for the first time, the electro-catalytic oxidation of 7-methyl-guanine (7-mGua) and 5-methyl-cytosine (5-mCyt) on a boron doped diamond electrode pre-treated cathodically (red-BDDE), using differential pulse voltammetry (DPV) and cyclic voltammetry (CV). The anodic peak potentials of 7-mGua and 5-mCyt by DPV were at E = 1.04 V and E = 1.37 V at pH = 4.5, indicating excellent peak separation of approximately 330 mV between species. Using DPV, experimental conditions such as supporting electrolyte, pH and influence of interferents were also investigated to develop a sensitive and selective method for individual and simultaneous quantification of these biomarkers. The analytical curves for the simultaneous quantification of 7-mGua and 5-mCyt in the acid medium (pH = 4.5) were: concentration range of 0.50-5.00 μmol L-1 (r = 0.999), detection limit of 0.27 μmol L-1 for 7-mGua; from 3.00 to 25.00 μmol L-1 (r = 0.998), with a detection limit of 1.69 μmol L-1 for 5-mCyt. A new DP voltammetric method for the simultaneous detection and quantification of biomarkers 7-mGua and 5-mCyt using a red-BDDE is proposed.
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Affiliation(s)
| | - Alex P Araújo
- Department of Chemistry, Federal Rural University of Pernambuco, Recife, PE, Brazil
| | - Arthur S Alves
- Department of Chemistry, Federal Rural University of Pernambuco, Recife, PE, Brazil
| | - Maycom W F Silva
- Department of Chemistry, Federal Rural University of Pernambuco, Recife, PE, Brazil
| | | | | | - Vagner B Dos Santos
- Fundamental Chemistry Department, Federal University of Pernambuco, Recife, PE, Brazil
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Mendes CH, Silva MW, Oliveira SCB. Voltammetric determination of 5-methylcytosine at glassy carbon electrode. J Electroanal Chem (Lausanne) 2021. [DOI: 10.1016/j.jelechem.2021.115437] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Zhang S, Huang J, Lu J, Liu M, Chen X, Su S, Mo F, Zheng J. Electrochemical and Optical Biosensing Strategies for DNA Methylation Analysis. Curr Med Chem 2020; 27:6159-6187. [DOI: 10.2174/0929867326666190903161750] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 07/24/2019] [Accepted: 08/07/2019] [Indexed: 12/14/2022]
Abstract
DNA methylation is considered as a crucial part of epigenetic modifications and a popular
research topic in recent decades. It usually occurs with a methyl group adding to the fifth carbon
atom of cytosine while the base sequence of DNA remains unchanged. DNA methylation has significant
influences on maintaining cell functions, genetic imprinting, embryonic development and
tumorigenesis procedures and hence the analysis of DNA methylation is of great medical significance.
With the development of analytical techniques and further research on DNA methylation,
numerous DNA methylation detection strategies based on biosensing technology have been developed
to fulfill various study requirements. This article reviewed the development of electrochemistry
and optical biosensing analysis of DNA methylation in recent years; in addition, we also reviewed
some recent advances in the detection of DNA methylation using new techniques, such as
nanopore biosensors, and highlighted the key technical and biological challenges involved in these
methods. We hope this paper will provide useful information for the selection and establishment of
analysis of DNA methylation.
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Affiliation(s)
- Shu Zhang
- Department of Basic Clinical Laboratory Medicine, School of Clinical Laboratory Science, Guizhou Medical University, No. 9 Beijing Road, Yunyan District, Guiyang 550004, China
| | - Jian Huang
- Department of Clinical and Military Laboratory Medicine, College of Medical Laboratory Science, Army Medical University, 30 Gaotanyan Street, Shapingba District, Chongqing 400038, China
| | - Jingrun Lu
- Department of Basic Clinical Laboratory Medicine, School of Clinical Laboratory Science, Guizhou Medical University, No. 9 Beijing Road, Yunyan District, Guiyang 550004, China
| | - Min Liu
- Department of Basic Clinical Laboratory Medicine, School of Clinical Laboratory Science, Guizhou Medical University, No. 9 Beijing Road, Yunyan District, Guiyang 550004, China
| | - Xi Chen
- Department of Basic Clinical Laboratory Medicine, School of Clinical Laboratory Science, Guizhou Medical University, No. 9 Beijing Road, Yunyan District, Guiyang 550004, China
| | - Shasha Su
- Department of Basic Clinical Laboratory Medicine, School of Clinical Laboratory Science, Guizhou Medical University, No. 9 Beijing Road, Yunyan District, Guiyang 550004, China
| | - Fei Mo
- Department of Basic Clinical Laboratory Medicine, School of Clinical Laboratory Science, Guizhou Medical University, No. 9 Beijing Road, Yunyan District, Guiyang 550004, China
| | - Junsong Zheng
- Department of Clinical and Military Laboratory Medicine, College of Medical Laboratory Science, Army Medical University, 30 Gaotanyan Street, Shapingba District, Chongqing 400038, China
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4
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The electrochemistry of 5-halocytosines at carbon based electrodes towards epigenetic sensing. Electrochim Acta 2018. [DOI: 10.1016/j.electacta.2018.06.050] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Tiwari JN, Vij V, Kemp KC, Kim KS. Engineered Carbon-Nanomaterial-Based Electrochemical Sensors for Biomolecules. ACS NANO 2016; 10:46-80. [PMID: 26579616 DOI: 10.1021/acsnano.5b05690] [Citation(s) in RCA: 270] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The study of electrochemical behavior of bioactive molecules has become one of the most rapidly developing scientific fields. Biotechnology and biomedical engineering fields have a vested interest in constructing more precise and accurate voltammetric/amperometric biosensors. One rapidly growing area of biosensor design involves incorporation of carbon-based nanomaterials in working electrodes, such as one-dimensional carbon nanotubes, two-dimensional graphene, and graphene oxide. In this review article, we give a brief overview describing the voltammetric techniques and how these techniques are applied in biosensing, as well as the details surrounding important biosensing concepts of sensitivity and limits of detection. Building on these important concepts, we show how the sensitivity and limit of detection can be tuned by including carbon-based nanomaterials in the fabrication of biosensors. The sensing of biomolecules including glucose, dopamine, proteins, enzymes, uric acid, DNA, RNA, and H2O2 traditionally employs enzymes in detection; however, these enzymes denature easily, and as such, enzymeless methods are highly desired. Here we draw an important distinction between enzymeless and enzyme-containing carbon-nanomaterial-based biosensors. The review ends with an outlook of future concepts that can be employed in biosensor fabrication, as well as limitations of already proposed materials and how such sensing can be enhanced. As such, this review can act as a roadmap to guide researchers toward concepts that can be employed in the design of next generation biosensors, while also highlighting the current advancements in the field.
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Affiliation(s)
- Jitendra N Tiwari
- Center for Superfunctional Materials, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) , Ulsan 689-798, Korea
| | - Varun Vij
- Center for Superfunctional Materials, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) , Ulsan 689-798, Korea
| | - K Christian Kemp
- Center for Superfunctional Materials, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) , Ulsan 689-798, Korea
| | - Kwang S Kim
- Center for Superfunctional Materials, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) , Ulsan 689-798, Korea
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Wang L, Yu F, Wang F, Chen Z. Electrochemical detection of DNA methylation using a glassy carbon electrode modified with a composite made from carbon nanotubes and β-cyclodextrin. J Solid State Electrochem 2016. [DOI: 10.1007/s10008-016-3122-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Huang J, Shen X, Hu Q, Ma Y, Bai S, Yue G, Yu X, Zeng Q, Wang L. High sensitivity simultaneous determination of myricetin and rutin using a polyfurfural film modified glassy carbon electrode. RSC Adv 2016. [DOI: 10.1039/c6ra20459g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Simultaneous determination of myricetin and rutin by polyfurfural film modified glassy carbon electrode.
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Affiliation(s)
- Jianzhi Huang
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Xiaolei Shen
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Qiong Hu
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Ya Ma
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Silan Bai
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Guoqing Yue
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Xiongtao Yu
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
| | - Qiang Zeng
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
- State Key Laboratory of Pulp and Paper Engineering
| | - Lishi Wang
- School of Chemistry and Chemical Engineering
- South China University of Technology
- Guangzhou 510641
- People's Republic of China
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Xu Y, Niu C, Xiao X, Zhu W, Dai Z, Zou X. Chemical-Oxidation Cleavage Triggered Isothermal Exponential Amplification Reaction for Attomole Gene-Specific Methylation Analysis. Anal Chem 2015; 87:2945-51. [DOI: 10.1021/ac5044785] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Yuzhi Xu
- School of Chemistry and Chemical
Engineering, Sun Yat−Sen University, Guangzhou, 510275 Guangdong, PR China
| | - Chang Niu
- School of Chemistry and Chemical
Engineering, Sun Yat−Sen University, Guangzhou, 510275 Guangdong, PR China
| | - Xiaofen Xiao
- School of Chemistry and Chemical
Engineering, Sun Yat−Sen University, Guangzhou, 510275 Guangdong, PR China
| | - Wenyuan Zhu
- School of Chemistry and Chemical
Engineering, Sun Yat−Sen University, Guangzhou, 510275 Guangdong, PR China
| | - Zong Dai
- School of Chemistry and Chemical
Engineering, Sun Yat−Sen University, Guangzhou, 510275 Guangdong, PR China
| | - Xiaoyong Zou
- School of Chemistry and Chemical
Engineering, Sun Yat−Sen University, Guangzhou, 510275 Guangdong, PR China
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