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Maral M, Erdem A. Carbon Nanofiber-Ionic Liquid Nanocomposite Modified Aptasensors Developed for Electrochemical Investigation of Interaction of Aptamer/Aptamer-Antisense Pair with Activated Protein C. BIOSENSORS 2023; 13:bios13040458. [PMID: 37185533 PMCID: PMC10136435 DOI: 10.3390/bios13040458] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 03/27/2023] [Accepted: 03/28/2023] [Indexed: 05/17/2023]
Abstract
Selective and sensitive detection of human activated protein C (APC) was performed herein by using carbon nanofiber (CNF) and ionic liquid (IL) composite modified pencil graphite electrode (PGE) and electrochemical impedance spectroscopy (EIS) technique. A carbon nanomaterial-based electrochemical aptasensor was designed and implemented for the first time in this study for the solution-phase interaction of DNA-Apt with its cognate protein APC as well as APC inhibitor aptamer-antidote pair. The applicability of this assay developed for the determination of APC in fetal bovine serum (FBS) and its selectivity against different proteins (protein C, thrombin, bovine serum albumin) was also examined. CNF-IL modified aptasensor specific to APC provided the detection limit as 0.23 μg/mL (equal to 3.83 nM) in buffer medium and 0.11 μg/mL (equal to 1.83 nM) in FBS. The duration of the proposed assay from the point of electrode modification to the detection of APC was completed within only 55 min.
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Affiliation(s)
- Meltem Maral
- Department of Material Science and Engineering, The Institute of Natural and Applied Sciences, Ege University, Bornova, 35100 Izmir, Turkey
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, Bornova, 35100 Izmir, Turkey
| | - Arzum Erdem
- Department of Material Science and Engineering, The Institute of Natural and Applied Sciences, Ege University, Bornova, 35100 Izmir, Turkey
- Analytical Chemistry Department, Faculty of Pharmacy, Ege University, Bornova, 35100 Izmir, Turkey
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Akgönüllü S, Koyun S, Yavuz H, Erdem A, Denizli A. Preparation of Surface Plasmon Resonance Aptasensor for Human Activated Protein C Sensing. METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 2022; 2393:37-56. [PMID: 34837173 DOI: 10.1007/978-1-0716-1803-5_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nucleic acid aptamers are an emerging class of artificial ligands and have recently gained attention in several areas. Here we report the design of a surface plasmon resonance (SPR) aptasensor for highly sensitive and selective sensing of human activated protein C (APC). First, DNA aptamer (DNA-Apt) specific for APC is complexed with N-methacryloyl-L-cysteine (MAC) monomer. Then, 2-hydroxyethyl methacrylate (HEMA) and cyanamide are mixed with the DNA-Apt/MAC complex. The SPR aptasensor is characterized by atomic force microscopy, ellipsometry, and contact angle measurements. Selectivity of SPR aptasensor is carried out in the presence of myoglobin (Myb), hemoglobin (Hb), and bovine serum albumin (BSA). Limit of detection (LOD) and limit of quantification (LOQ) values are 1.5 ng mL-1 and 5.2 ng mL-1, respectively. DNA-Apt SPR aptasensor performance for APC detection is also examined in artificial plasma.
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Affiliation(s)
- Semra Akgönüllü
- Department of Chemistry, Hacettepe University, Ankara, Turkey
| | - Seda Koyun
- Department of Chemistry, Hacettepe University, Ankara, Turkey
| | - Handan Yavuz
- Department of Chemistry, Hacettepe University, Ankara, Turkey
| | - Arzum Erdem
- Faculty of Pharmacy, Ege University, İzmir, Turkey
| | - Adil Denizli
- Department of Chemistry, Hacettepe University, Ankara, Turkey.
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Hosseini Ghalehno M, Mirzaei M, Torkzadeh-Mahani M. Electrochemical aptasensor for activated protein C using a gold nanoparticle - Chitosan/graphene paste modified carbon paste electrode. Bioelectrochemistry 2019; 130:107322. [PMID: 31295701 DOI: 10.1016/j.bioelechem.2019.06.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 06/21/2019] [Accepted: 06/21/2019] [Indexed: 01/01/2023]
Abstract
In this work, a selective and simple electrochemical aptasensor was developed for the detection of activated protein C by employing methylene blue (MB) as a redox indicator. An activated protein C aptamer (APC-apt) was covalently immobilized on the surface of a carbon paste electrode modified with gold nanoparticle - chitosan /graphene paste (AuNPs-Chi/Gr). The AuNPs-Chi/Gr paste increased electrochemical peak current and immobilized the aptamer on the electrode surface. The process of aptasensor construction and successful immobilization of the aptamer on the electrode surface was confirmed by electrochemical cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS). Differential pulse voltammetry (DPV) was used to determine the methylene blue peak current. By replacing APC instead of MB at the electrode surface, the cathodic current of the MB decreases, and this decrease corresponds to the APC concentration. Under optimum conditions, the APC concentration was detected in the range from of 0.1 ng·mL-1 to 40 μg·mL-1 with a relatively low detection limit of 0.073 ng·mL-1. This method was then applied to the determination of APC in human serum samples. The results revealed that this strategy can be used to measure other proteins in biological samples.
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Affiliation(s)
- Maryam Hosseini Ghalehno
- Department of Chemistry, University of Shahid Bahonar Kerman, Kerman, Iran; Young Research Society, Shahid Bahonar University of Kerman, Kerman, Iran
| | - Mohammad Mirzaei
- Department of Chemistry, University of Shahid Bahonar Kerman, Kerman, Iran
| | - Masoud Torkzadeh-Mahani
- Department of Biotechnology, Institute of Science, High Technology and Environmental Sciences, Graduate University of Advanced Technology, Kerman, Iran.
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Koyun S, Akgönüllü S, Yavuz H, Erdem A, Denizli A. Surface plasmon resonance aptasensor for detection of human activated protein C. Talanta 2018; 194:528-533. [PMID: 30609568 DOI: 10.1016/j.talanta.2018.10.007] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Revised: 09/28/2018] [Accepted: 10/01/2018] [Indexed: 01/21/2023]
Abstract
The aim of this study is a highly sensitive and selective label-free surface plasmon resonance (SPR) aptasensor preparation for the specific detection of human activated protein C (APC). In the first step, DNA aptamer was complexed with N-methacryloyl-L-cysteine (MAC) monomer. Then, cyanamide and 2-hydroxyethyl methacrylate solution was mixed with the DNA-Apt/MAC complex. Two different SPR sensors (Random-DNA and HEMA-MAC polymeric films) were also prepared by following the same experimental procedure. The characterization of SPR aptasensors was done by contact angle, atomic force microscopy, and ellipsometer analysis. Selectivity studies of SPR aptasensors were performed in the presence of bovine serum albumin, hemoglobin and myoglobin. Desorption studies were performed by using 0.025 M NaCl solution. The limit of detection (LOD) and limit of quantification (LOQ) values of DNA-Apt SPR aptasensor was determined as 1.5 ng/mL and 5.2 ng/mL.
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Affiliation(s)
- Seda Koyun
- Hacettepe University, Department of Chemistry, 06800 Ankara, Turkey
| | - Semra Akgönüllü
- Hacettepe University, Department of Chemistry, 06800 Ankara, Turkey
| | - Handan Yavuz
- Hacettepe University, Department of Chemistry, 06800 Ankara, Turkey
| | - Arzum Erdem
- Ege University, Faculty of Pharmacy, Analytical Chemistry Department, 35100, Izmir, Turkey
| | - Adil Denizli
- Hacettepe University, Department of Chemistry, 06800 Ankara, Turkey.
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Electrochemical study of hydrochlorothiazide on electrochemically pre-treated pencil graphite electrode as a sensor. SENSING AND BIO-SENSING RESEARCH 2017. [DOI: 10.1016/j.sbsr.2017.09.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Electrochemical analysis of amlodipine in some pharmaceutical formulations and biological fluid using disposable pencil graphite electrode. J Electroanal Chem (Lausanne) 2017. [DOI: 10.1016/j.jelechem.2017.01.055] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Voltammetric Aptasensor Based on Magnetic Beads Assay for Detection of Human Activated Protein C. Methods Mol Biol 2016; 1380:163-70. [PMID: 26552824 DOI: 10.1007/978-1-4939-3197-2_13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Aptamers are defined as new generation of nucleic acids, which has recently presented promising specifications over to antibodies. An increasing number of electrochemical studies related to aptamer-based sensors, so-called aptasensors have been introduced in the literature. Herein, the interaction between human activated protein C (APC) and its cognate DNA aptamer (DNA APT) was performed at the surface of magnetic beads (MBs), followed by voltammetric detection using disposable graphite electrodes (PGEs).
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Differential pulse voltammetric determination of acyclovir in pharmaceutical preparations using a pencil graphite electrode. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2016; 63:570-6. [DOI: 10.1016/j.msec.2016.02.079] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2015] [Revised: 02/24/2016] [Accepted: 02/29/2016] [Indexed: 01/04/2023]
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Erdem A, Congur G, Mayer G. Aptasensor platform based on carbon nanofibers enriched screen printed electrodes for impedimetric detection of thrombin. J Electroanal Chem (Lausanne) 2015. [DOI: 10.1016/j.jelechem.2015.10.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Eksin E, Erdem A, Kuruc AP, Kayi H, Öğünç A. Impedimetric Aptasensor Based on Disposable Graphite Electrodes Developed for Thrombin Detection. ELECTROANAL 2015. [DOI: 10.1002/elan.201500226] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Bal-Demirci T, Congur G, Erdem A, Erdem-Kuruca S, Özdemir N, Akgün-Dar K, Varol B, Ülküseven B. Iron(iii) and nickel(ii) complexes as potential anticancer agents: synthesis, physicochemical and structural properties, cytotoxic activity and DNA interactions. NEW J CHEM 2015. [DOI: 10.1039/c5nj00594a] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The iron complex 3 was cytotoxic at low concentrations in K562 cells and could damage the DNA, specifically the adenine base.
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Affiliation(s)
- Tülay Bal-Demirci
- Department of Chemistry
- Engineering Faculty
- İstanbul University
- İstanbul
- Turkey
| | - Gulsah Congur
- Ege University
- Faculty of Pharmacy
- Analytical Chemistry Department
- İzmir
- Turkey
| | - Arzum Erdem
- Ege University
- Faculty of Pharmacy
- Analytical Chemistry Department
- İzmir
- Turkey
| | - Serap Erdem-Kuruca
- Department of Physiology
- İstanbul Medical Faculty
- İstanbul University
- İstanbul
- Turkey
| | - Namık Özdemir
- Department of Physics
- Faculty of Arts and Sciences
- Ondokuz Mayıs University
- Samsun
- Turkey
| | - Kadriye Akgün-Dar
- Department of Biology
- İstanbul Science Faculty
- İstanbul University
- İstanbul
- Turkey
| | - Başak Varol
- Department of Biophysic
- İstanbul Medical Faculty
- İstanbul University
- İstanbul
- Turkey
| | - Bahri Ülküseven
- Department of Chemistry
- Engineering Faculty
- İstanbul University
- İstanbul
- Turkey
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