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Badiye A, Kapoor N, Shukla RK. Detection and separation of proteins using micro/nanofluidics devices. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2022; 186:59-84. [PMID: 35033290 DOI: 10.1016/bs.pmbts.2021.07.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Microfluidics is the technology or system wherein the behavior of fluids' is studied onto a miniaturized device composed of chambers and tunnels. In biological and biomedical sciences, microfluidic technology/system or device serves as an ultra-high-output approach capable of detecting and separating the biomolecules present even in trace quantities. Given the essential role of protein, the identification and quantification of proteins help understand the various living systems' biological function regulation. Microfluidics has enormous potential to enable biological investigation at the cellular and molecular level and maybe a fair substitution of the sophisticated instruments/equipment used for proteomics, genomics, and metabolomics analysis. The current advancement in microfluidic systems' development is achieving momentum and opening new avenues in developing innovative and hybrid methodologies/technologies. This chapter attempts to expound the micro/nanofluidic systems/devices for their wide-ranging application to detect and separate protein. It covers microfluidic chip electrophoresis, microchip gel electrophoresis, and nanofluidic systems as protein separation systems, while methods such as spectrophotometric, mass spectrometry, electrochemical detection, magneto-resistive sensors and dynamic light scattering (DLS) are discussed as proteins' detection system.
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Affiliation(s)
- Ashish Badiye
- Department of Forensic Science, Government Institute of Forensic Sciences, Nagpur, Maharashtra, India
| | - Neeti Kapoor
- Department of Forensic Science, Government Institute of Forensic Sciences, Nagpur, Maharashtra, India
| | - Ritesh K Shukla
- Biological and Life Sciences, School of Arts and Sciences, Ahmedabad University, Ahmedabad, Gujarat, India.
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Khan JU, Ruland A, Sayyar S, Paull B, Chen J, Innis PC. Wireless bipolar electrode-based textile electrofluidics: towards novel micro-total-analysis systems. LAB ON A CHIP 2021; 21:3979-3990. [PMID: 34636814 DOI: 10.1039/d1lc00538c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Point of care testing using micro-total-analysis systems (μTAS) is critical to emergent healthcare devices with rapid and robust responses. However, two major barriers to the success of this approach are the prohibitive cost of microchip fabrication and poor sensitivity due to small sample volumes in a microfluidic format. Here, we aimed to replace the complex microchip format with a low-cost textile substrate with inherently built microchannels using the fibers' spaces. Secondly, by integrating this textile-based microfluidics with electrophoresis and wireless bipolar electrochemistry, we can significantly improve solute detection by focusing and concentrating the analytes of interest. Herein, we demonstrated that an in situ metal electrode simply inserted inside the textile-based electrophoretic system can act as a wireless bipolar electrode (BPE) that generates localized electric field and pH gradients adjacent to the BPE and extended along the length of the textile construct. As a result, charged analytes were not only separated electrophoretically but also focused where their electrophoretic migration and counter flow (EOF) balances due to redox reactions proceeding at the BPE edges. The developed wireless redox focusing technique on textile constructs was shown to achieve a 242-fold enrichment of anionically charged solute over an extended time of 3000 s. These findings suggest a simple route that achieves separation and analyte focusing on low-cost surface-accessible inverted substrates, which is far simpler than the more complex ITP on conventional closed and inaccessible capillary channels.
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Affiliation(s)
- Jawairia Umar Khan
- ARC Centre of Excellence for Electromaterials Science (ACES), AIIM Facility, University of Wollongong, Innovation Campus, New South Wales 2500, Australia.
- Department of Fibre and Textile Technology, University of Agriculture, Faisalabad 38000, Pakistan
| | - Andres Ruland
- ARC Centre of Excellence for Electromaterials Science (ACES), AIIM Facility, University of Wollongong, Innovation Campus, New South Wales 2500, Australia.
| | - Sepidar Sayyar
- ARC Centre of Excellence for Electromaterials Science (ACES), AIIM Facility, University of Wollongong, Innovation Campus, New South Wales 2500, Australia.
- Australian National Fabrication Facility - Materials Node, University of Wollongong, Innovation Campus, New South Wales 2500, Australia
| | - Brett Paull
- Australian Centre for Research on Separation Science (ACROSS) and, ARC Centre of Excellence for Electromaterials Science (ACES), School of Natural Sciences, University of Tasmania, Hobart, Tasmania 7005, Australia
| | - Jun Chen
- ARC Centre of Excellence for Electromaterials Science (ACES), AIIM Facility, University of Wollongong, Innovation Campus, New South Wales 2500, Australia.
| | - Peter C Innis
- ARC Centre of Excellence for Electromaterials Science (ACES), AIIM Facility, University of Wollongong, Innovation Campus, New South Wales 2500, Australia.
- Australian National Fabrication Facility - Materials Node, University of Wollongong, Innovation Campus, New South Wales 2500, Australia
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Microfluidic strategies for sample separation and rapid detection of food allergens. Trends Food Sci Technol 2021. [DOI: 10.1016/j.tifs.2021.02.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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T cell activation and immune synapse organization respond to the microscale mechanics of structured surfaces. Proc Natl Acad Sci U S A 2019; 116:19835-19840. [PMID: 31527238 DOI: 10.1073/pnas.1906986116] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Cells have the remarkable ability to sense the mechanical stiffness of their surroundings. This has been studied extensively in the context of cells interacting with planar surfaces, a conceptually elegant model that also has application in biomaterial design. However, physiological interfaces are spatially complex, exhibiting topographical features that are described over multiple scales. This report explores mechanosensing of microstructured elastomer surfaces by CD4+ T cells, key mediators of the adaptive immune response. We show that T cells form complex interactions with elastomer micropillar arrays, extending processes into spaces between structures and forming local areas of contraction and expansion dictated by the layout of microtubules within this interface. Conversely, cytoskeletal reorganization and intracellular signaling are sensitive to the pillar dimensions and flexibility. Unexpectedly, these measures show different responses to substrate rigidity, suggesting competing processes in overall T cell mechanosensing. The results of this study demonstrate that T cells sense the local rigidity of their environment, leading to strategies for biomaterial design.
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Rodríguez-Ruiz I, Babenko V, Martínez-Rodríguez S, Gavira JA. Protein separation under a microfluidic regime. Analyst 2017; 143:606-619. [PMID: 29214270 DOI: 10.1039/c7an01568b] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Lab-on-a-Chip (LoC), or micro-Total Analysis Systems (μTAS), is recognized as a powerful analytical technology with high capabilities, though end-user products for protein purification are still far from being available on the market. Remarkable progress has been achieved in the separation of nucleic acids and proteins using electrophoretic microfluidic devices, while pintsize devices have been developed for protein isolation according to miniaturized chromatography principles (size, charge, affinity, etc.). In this work, we review the latest advances in the fabrication of components, detection methods and commercial implementation for the separation of biological macromolecules based on microfluidic systems, with some critical remarks on the perspectives of their future development towards standardized microfluidic systems and protocols. An outlook on the current needs and future applications is also presented.
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Affiliation(s)
| | - V Babenko
- Laboratorio de Estudios Cristalograficos, Instituto Andaluz de Ciencias de la Tierra, CSIC-University of Granada, Avenida de las Palmeras 4, 18100 Armilla, Granada, Spain.
| | - S Martínez-Rodríguez
- Department of Biochemistry and Molecular Biology III and Immunology. University of Granada, Granada, Spain
| | - J A Gavira
- Laboratorio de Estudios Cristalograficos, Instituto Andaluz de Ciencias de la Tierra, CSIC-University of Granada, Avenida de las Palmeras 4, 18100 Armilla, Granada, Spain.
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Zhao Y, Pereira F, deMello AJ, Morgan H, Niu X. Droplet-based in situ compartmentalization of chemically separated components after isoelectric focusing in a Slipchip. LAB ON A CHIP 2014; 14:555-561. [PMID: 24292781 DOI: 10.1039/c3lc51067k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Isoelectric focusing (IEF) is a powerful and widely used technique for protein separation and purification. There are many embodiments of microscale IEF that use capillary or microfluidic chips for the analysis of small sample volumes. Nevertheless, collecting the separated sample volumes without causing remixing remains a challenge. Herein, we describe a microfluidic Slipchip device that is able to efficiently compartmentalize focused analyte bands in situ into microdroplets. The device contains a microfluidic "zig-zag" separation channel that is composed of a sequence of wells formed in the two halves of the Slipchip. The analytes are focused in the channel and then compartmentalised into droplets by slipping the chip. Importantly, sample droplets can be analysed on chip or collected for subsequent analysis using electrophoresis or mass spectrometry for example. To demonstrate this approach, we perform IEF separation using standard markers and protein samples, with on-chip post-processing. Compared to alternative approaches for sample collection, the method avoids remixing, is scalable and is easily hyphenated with the other analytical methods.
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Affiliation(s)
- Yan Zhao
- Faculty of Physical Sciences and Engineering, and Institute for Life Sciences, University of Southampton, Highfield, Southampton, SO17 1BJ, UK.
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Li S, Dong JY, Guo CG, Wu YX, Zhang W, Fan LY, Cao CX, Zhang WB. A stable and high-resolution isoelectric focusing capillary array device for micropreparative separation of proteins. Talanta 2013; 116:259-65. [DOI: 10.1016/j.talanta.2013.05.041] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2013] [Revised: 05/16/2013] [Accepted: 05/19/2013] [Indexed: 12/13/2022]
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New solution IEF device for micropreparative separation of peptides and proteins. Electrophoresis 2013; 34:1519-25. [DOI: 10.1002/elps.201200485] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2012] [Revised: 12/17/2012] [Accepted: 12/27/2012] [Indexed: 11/07/2022]
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Kenyon SM, Meighan MM, Hayes MA. Recent developments in electrophoretic separations on microfluidic devices. Electrophoresis 2011; 32:482-93. [DOI: 10.1002/elps.201000469] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2010] [Revised: 11/24/2010] [Accepted: 12/09/2010] [Indexed: 11/09/2022]
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Kataoka M, Yokoyama H, Henares TG, Kawamura K, Yao T, Hisamoto H. Reagent-release capillary array-isoelectric focusing device as a rapid screening device for IEF condition optimization. LAB ON A CHIP 2010; 10:3341-3347. [PMID: 20714639 DOI: 10.1039/c0lc00019a] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
This report describes the fabrication and characterization of a simple and disposable capillary isoelectric focusing (cIEF) device containing a reagent-release capillary (RRC) array and poly(dimethylsiloxane) (PDMS) platform, which allows rapid (within 10 min) screening of cIEF conditions by introducing a sample solution into plural RRCs by capillary action followed by electric field application. To prepare the RRC, covalent immobilization of poly(dimethylacrylamide) (PDMA) was conducted to suppress electro-osmotic flow (EOF), followed by physical adsorption of the mixture of carrier ampholyte (CA), surfactant, labeling reagent (LR), and other additives to the PDMA surface to construct a two-layer structure inside a square glass capillary. When the sample solution containing proteins was introduced into the RRC, physically adsorbed CA, surfactant, and LR can be dissolved and released into the sample solution. Then, complexation of LR with proteins, mixing with CA and surfactant, and exposure of the PDMA surface spontaneously occurs for the IEF experiments. Here, three different RRCs that immobilize different CAs were prepared, and simultaneous cIEF experiments involving hemoglobin AFSC mixtures for choosing the best CA demonstrated the proof of concept.
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Affiliation(s)
- Masaki Kataoka
- Department of Applied Chemistry, Graduate School of Engineering, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai City, Osaka 599-8531, Japan
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Ktari N, Poncet P, Sénéchal H, Malaquin L, Kanoufi F, Combellas C. Patterning of polystyrene by scanning electrochemical microscopy. Biological applications to cell adhesion. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:17348-17356. [PMID: 20945917 DOI: 10.1021/la1028564] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Polystyrene surfaces may be patterned by Ag(II), NO(3)(•), and OH(•) electrogenerated at the tip of a scanning electrochemical microscope. These electrogenerated reagents lead to local surface oxidation of the polymer. The most efficient surface treatment is obtained with Ag(II). The patterns are evidenced by XPS and IR and also by the surface wettability contrast between the hydrophobic virgin surface and the hydrophilic pattern. Such Ag(II) treatment of a polystyrene Petri dish generates discriminative surfaces able to promote or disfavor the adhesion of proteins and also the adhesion and growth of adherent cells. The process is also successfully applied to a cyclo-olefin copolymer and should be suitable to pattern any hydrogenated polymer.
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Affiliation(s)
- N Ktari
- Physicochimie des Electrolytes, Colloïdes et Sciences Analytiques, ESPCI ParisTech, CNRS UMR 7195, 10 rue Vauquelin, Paris, F-75231 France
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Li HY, Dauriac V, Thibert V, Senechal H, Peltre G, Zhang XX, Descroix S. Micropillar array chips toward new immunodiagnosis. LAB ON A CHIP 2010; 10:2597-604. [PMID: 20714504 DOI: 10.1039/c005034b] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
In this paper, we demonstrate the possibility to use a micropillar array to perform molecular immunodiagnosis. A polydimethylsiloxane (PDMS) microdevice consisting of a rectangular array of micropillars (45 µm in height, 100 × 100 µm square cross section) was used to replace microchannels or gels (polyacrylamide or agarose) to perform electrokinetic separation. This microarray was used to mimic highly diluted gel and to maintain electrolyte within the pillar zone by capillary effect. The electrolyte composition (glycerol and agarose content) was investigated in order to improve protein separation by isoelectric focusing (IEF). The influence of glycerol on focusing time and on the different evaporative contributions was further evaluated. In order to perform an immunodiagnostic of milk allergy, different surface treatments were optimized to prevent milk allergen adsorption on PDMS surface. Poly(dimethylacrylamide)-co-allyl glycidyl ether (PDMA-AGE) as well as gelatin led to a satisfactory signal to noise ratio. Finally the possibility to perform protein mixture separation using this micropillar array chip followed by immunoblotting was demonstrated by using the serum from an allergic individual, confirming the great potential of this analytical platform in the field of immunodiagnosis.
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Affiliation(s)
- Hong-Yi Li
- Physicochimie des Electrolytes, Colloïdes et Sciences Analytiques (PECSA) UMR 7195, 10 rue Vauquelin, 75231 Paris cedex 05, France
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Tran NT, Ayed I, Pallandre A, Taverna M. Recent innovations in protein separation on microchips by electrophoretic methods: An update. Electrophoresis 2010; 31:147-73. [DOI: 10.1002/elps.200900465] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Poitevin M, Shakalisava Y, Miserere S, Peltre G, Viovy JL, Descroix S. Evaluation of microchip material and surface treatment options for IEF of allergenic milk proteins on microchips. Electrophoresis 2009; 30:4256-63. [DOI: 10.1002/elps.200900254] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Perdue RK, Laws DR, Hlushkou D, Tallarek U, Crooks RM. Bipolar Electrode Focusing: The Effect of Current and Electric Field on Concentration Enrichment. Anal Chem 2009; 81:10149-55. [DOI: 10.1021/ac901913r] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Robbyn K. Perdue
- Department of Chemistry and Biochemistry, Center for Electrochemistry, and the Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0165, and Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Derek R. Laws
- Department of Chemistry and Biochemistry, Center for Electrochemistry, and the Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0165, and Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Dzmitry Hlushkou
- Department of Chemistry and Biochemistry, Center for Electrochemistry, and the Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0165, and Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Ulrich Tallarek
- Department of Chemistry and Biochemistry, Center for Electrochemistry, and the Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0165, and Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
| | - Richard M. Crooks
- Department of Chemistry and Biochemistry, Center for Electrochemistry, and the Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, 1 University Station, A5300, Austin, Texas 78712-0165, and Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032 Marburg, Germany
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Hlushkou D, Perdue RK, Dhopeshwarkar R, Crooks RM, Tallarek U. Electric field gradient focusing in microchannels with embedded bipolar electrode. LAB ON A CHIP 2009; 9:1903-1913. [PMID: 19532966 DOI: 10.1039/b822404h] [Citation(s) in RCA: 78] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The complex interplay of electrophoretic, electroosmotic, bulk convective, and diffusive mass/charge transport in a hybrid poly(dimethylsiloxane) (PDMS)/glass microchannel with embedded floating electrode is analyzed. The thin floating electrode attached locally to the wall of the straight microchannel results in a redistribution of local field strength after the application of an external electric field. Together with bulk convection based on cathodic electroosmotic flow, an extended field gradient is formed in the anodic microchannel segment. It imparts a spatially dependent electrophoretic force on charged analytes and, in combination with the bulk convection, results in an electric field gradient focusing at analyte-specific positions. Analyte concentration in the enriched zone approaches a maximum value which is independent of its concentration in the supplying reservoirs. A simple approach is shown to unify the temporal behavior of the concentration factors under general conditions.
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Affiliation(s)
- Dzmitry Hlushkou
- Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Strasse, 35032, Marburg, Germany
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Proczek G, Augustin V, Descroix S, Hennion MC. Integrated microdevice for preconcentration and separation of a wide variety of compounds by electrochromatography. Electrophoresis 2009; 30:515-24. [DOI: 10.1002/elps.200800308] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Varenne A, Descroix S. Recent strategies to improve resolution in capillary electrophoresis—A review. Anal Chim Acta 2008. [DOI: 10.1016/j.aca.2008.08.039] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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