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Yu C, Dai S, Zhang Z, Li S, Cheng J, Hu H, Wu J, Li J. An integrated digital polymerase chain reaction chip for multiplexed meat adulteration detection. Electrophoresis 2023; 44:1342-1352. [PMID: 37309725 DOI: 10.1002/elps.202200188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 01/12/2023] [Accepted: 05/24/2023] [Indexed: 06/14/2023]
Abstract
Meat adulteration detection is a common concern of consumers. Here, we proposed a multiplex digital polymerase chain reaction method and a low-cost device for meat adulteration detection. Using a polydimethylsiloxane microfluidic device, polymerase chain reaction reagents could be pump-free loaded into microchambers (40 × 40 chambers) automatically. Due to the independence of multiplex fluorescence channels, deoxyribonucleic acid templates extracted from different animal species could be distinguished by one test. In this paper, we designed primers and probes for four types of meat (beef, chicken, pork, and duck) and labeled each of the four fluorescent markers (hexachlorocyclohexane [HEX], 6-carboxyfluorescein [FAM], X-rhodamine [ROX], and cyanine dyes 5 [CY5]) on the probes. Specific detection and mixed detection experiments were performed on four types of meat, realizing a limit of detection of 3 copies/µL. A mixture of four different species can be detected by four independent fluorescence channels. The quantitative capability of this method is found to meet the requirements of meat adulteration detections. This method has great potential for point-of-care testing together with portable microscopy equipment.
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Affiliation(s)
- Chengzhuang Yu
- Hebei Key Laboratory of Smart Sensing and Human-robot Interactions, School of Mechanical Engineering, Hebei University of Technology, Tianjin, P. R. China
| | - Shijie Dai
- Hebei Key Laboratory of Smart Sensing and Human-robot Interactions, School of Mechanical Engineering, Hebei University of Technology, Tianjin, P. R. China
| | - Ziqi Zhang
- Hebei Key Laboratory of Smart Sensing and Human-robot Interactions, School of Mechanical Engineering, Hebei University of Technology, Tianjin, P. R. China
| | - Shanshan Li
- Hebei Key Laboratory of Smart Sensing and Human-robot Interactions, School of Mechanical Engineering, Hebei University of Technology, Tianjin, P. R. China
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin, P. R. China
| | - Jingmeng Cheng
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin, P. R. China
| | - Hezhi Hu
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin, P. R. China
| | - Jayne Wu
- Department of Electrical Engineering and Computer Science, The University of Tennessee, Knoxville, Tennessee, USA
| | - Junwei Li
- Institute of Biophysics, School of Health Sciences and Biomedical Engineering, Hebei University of Technology, Tianjin, P. R. China
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2
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Kwawukume S, Velez FJ, Williams D, Cui L, Singh P. Rapid PCR-lateral flow assay for the onsite detection of Atlantic white shrimp. FOOD CHEMISTRY. MOLECULAR SCIENCES 2023; 6:100164. [PMID: 36698370 PMCID: PMC9868375 DOI: 10.1016/j.fochms.2023.100164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 01/06/2023] [Accepted: 01/13/2023] [Indexed: 06/17/2023]
Abstract
The Atlantic white shrimp (Litopenaeus setiferus) is of great economic importance to the United States and risk being substituted with imported species due to a shortage in domestic production. To improve the current methods used for the identification of the Atlantic white shrimp species, we designed and validated a robust multiplex PCR-lateral flow assay for the onsite identification of L. setiferus. The standardized assay was validated using a miniaturized, low-cost PCR instrument with 68 shrimp, prawn, and fish samples, spread over fourteen seafood species. L. setiferus was simultaneously amplified by the multiplex assay to give three visual bands, which distinguished it from other species having either one or two bands on the dipstick. The standardized assay showed 100% inclusivity for target L. setiferus samples, 100% exclusivity for non-target samples and can be completed in less than two hours. The assay standardized in this study can be used for onsite testing of L. setiferus samples at processing facilities, restaurants, and wholesalers' facilities.
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Affiliation(s)
- Samuel Kwawukume
- Department of Nutrition, and Integrative Physiology, Florida State University, Tallahassee, FL, USA
| | - Frank J. Velez
- Department of Nutrition, and Integrative Physiology, Florida State University, Tallahassee, FL, USA
| | - David Williams
- SeaD Consulting, 10015 Black Birch, Tomball, TX 77375, USA
| | - Leqi Cui
- Department of Nutrition, and Integrative Physiology, Florida State University, Tallahassee, FL, USA
| | - Prashant Singh
- Department of Nutrition, and Integrative Physiology, Florida State University, Tallahassee, FL, USA
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3
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Mechanisms and Health Aspects of Food Adulteration: A Comprehensive Review. Foods 2023; 12:foods12010199. [PMID: 36613416 PMCID: PMC9818512 DOI: 10.3390/foods12010199] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 12/26/2022] [Accepted: 12/28/2022] [Indexed: 01/04/2023] Open
Abstract
Food adulteration refers to the alteration of food quality that takes place deliberately. It includes the addition of ingredients to modify different properties of food products for economic advantage. Color, appearance, taste, weight, volume, and shelf life are such food properties. Substitution of food or its nutritional content is also accomplished to spark the apparent quality. Substitution with species, protein content, fat content, or plant ingredients are major forms of food substitution. Origin misrepresentation of food is often practiced to increase the market demand of food. Organic and synthetic compounds are added to ensure a rapid effect on the human body. Adulterated food products are responsible for mild to severe health impacts as well as financial damage. Diarrhea, nausea, allergic reaction, diabetes, cardiovascular disease, etc., are frequently observed illnesses upon consumption of adulterated food. Some adulterants have shown carcinogenic, clastogenic, and genotoxic properties. This review article discusses different forms of food adulteration. The health impacts also have been documented in brief.
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4
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Ramachandran K, Daoudi K, Kacem HH, Columbus S, Benaoum H, Gaidi M. Rapid and ultra-sensitive detection of pork DNA with surface enhanced Raman spectroscopy for onsite food quality inspection. SENSING AND BIO-SENSING RESEARCH 2022. [DOI: 10.1016/j.sbsr.2022.100524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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5
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Pu K, Qiu J, Li J, Huang W, Lai X, Liu C, Lin Y, Ng KM. MALDI-TOF MS Protein Profiling Combined with Multivariate Analysis for Identification and Quantitation of Beef Adulteration. FOOD ANAL METHOD 2022. [DOI: 10.1007/s12161-022-02403-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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Dawan J, Ahn J. Application of DNA barcoding for ensuring food safety and quality. Food Sci Biotechnol 2022; 31:1355-1364. [PMID: 36060568 PMCID: PMC9433498 DOI: 10.1007/s10068-022-01143-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 06/29/2022] [Accepted: 07/18/2022] [Indexed: 11/29/2022] Open
Abstract
With increasing international food trade, food quality and safety are high priority worldwide. The consumption of contaminated and adulterated food can cause serious health problems such as infectious diseases and allergies. Therefore, the authentication and traceability systems are needed to improve food safety. The mitochondrial DNA can be used for species authentication of food and food products. Effective DNA barcode markers have been developed to correctly identify species. The US FDA approved to the use of DNA barcoding for various food products. The DNA barcoding technology can be used as a regulatory tool for identification and authenticity. The application of DNA barcoding can reduce the microbiological and toxicological risks associated with the consumption of food and food products. DNA barcoding can be a gold-standard method in food authenticity and fraud detection. This review describes the DNA barcoding method for preventing food fraud and adulteration in meat, fish, and medicinal plants.
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Kumar P, Rani A, Singh S, Kumar A. Recent advances on
DNA
and omics‐based technology in Food testing and authentication: A review. J Food Saf 2022. [DOI: 10.1111/jfs.12986] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Pramod Kumar
- National Institute of Cancer Prevention and Research Indian Council for Medical Research (ICMR‐NICPR) Noida India
| | - Alka Rani
- National Institute of Cancer Prevention and Research Indian Council for Medical Research (ICMR‐NICPR) Noida India
| | - Shalini Singh
- National Institute of Cancer Prevention and Research Indian Council for Medical Research (ICMR‐NICPR) Noida India
| | - Anuj Kumar
- National Institute of Cancer Prevention and Research Indian Council for Medical Research (ICMR‐NICPR) Noida India
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8
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Molecular tools for assuring human health and environment-friendly frozen shellfish products in the United Arab Emirates markets. FOOD CHEMISTRY: MOLECULAR SCIENCES 2021; 3:100028. [PMID: 35415652 PMCID: PMC8991501 DOI: 10.1016/j.fochms.2021.100028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 05/29/2021] [Accepted: 05/29/2021] [Indexed: 11/23/2022]
Abstract
Frozen UAE shellfish samples were identified using 16S rDNA barcoding. Significant substitutions were identified for calamari by peanut worm, cattle, and rat. Although labelled as UAE in origin most shrimps were non-native species. Analyzed shellfish barcodes showed most species belong to low diversity populations.
Shellfish consumption in the United Arab Emirates (UAE) exceeds local supply and frozen fish and seafood products are imported to fill the gap. To determine the species in frozen shellfish brands on the UAE markets, 95 frozen samples were subjected to PCR amplification and sequencing of the hypervariable region of the 16S rDNA. This identified 11 different shrimp species and two squid species in the frozen shellfish packs. About 40% of calamari brands contained peanut worm, cattle, and rat 16S rDNA. Also, most shellfish species analyzed had low nucleotide diversity, including two shrimp species (Litopenaeus vannamei and Metapenopsis barbata), which had very limited genetic diversity, low raggedness, and an absence of population expansion. Species misnaming, substitution, overexploitation, origin misreporting, and low genetic diversity were found across frozen UAE shellfish samples analyzed, suggesting inspection and monitoring of frozen seafood sold in UAE markets would be appropriate.
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9
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Ampaporn K, Phasuk Y, Duangjinda M. Droplet digital polymerase chain reaction assay for identifying and quantifying pork products. Anim Sci J 2021; 92:e13595. [PMID: 34318546 DOI: 10.1111/asj.13595] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 06/21/2021] [Indexed: 11/29/2022]
Abstract
Halal products are growing in consumer markets worldwide, and pork meat is classified as non-halal. Manufacturers of processed foods and products must ensure that their products follow Islamic dietary law because pork is prohibited for Muslims. Droplet digital polymerase chain reaction (PCR) (ddPCR) is a novel method for identifying pig species and quantifying pork products. This experiment aimed to investigate pork species and establish the proportion of pork in meat products using the mitochondrial cytochrome b gene (CYTB). The study found that the correlation coefficient between the meat weight and DNA concentration of pork was 0.997, and the correlation coefficient between the DNA concentration and the target DNA copy number of pork was 0.998. The accuracy of the ddPCR assay was verified using a sample of a known proportion of pork, and it was revealed that this method is highly precise in quantifying pork products. Nine products contained an undeclared meat proportion (90%). The limit of detection for pork was 0.0001 ng. The analysis indicated that the ddPCR assay has high accuracy and sensitivity for quantifying pork products. Therefore, the predictive model can be used in routine laboratories for quality assurance of halal food products.
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Affiliation(s)
- Kessara Ampaporn
- Department of Animal Science, Faculty of Agriculture, Khon Kaen University, Khon Kaen, Thailand
| | - Yupin Phasuk
- Department of Animal Science, Faculty of Agriculture, Khon Kaen University, Khon Kaen, Thailand
| | - Monchai Duangjinda
- Department of Animal Science, Faculty of Agriculture, Khon Kaen University, Khon Kaen, Thailand.,Network Center for Animal Breeding and Omics Research, Faculty of Agriculture, Khon Kaen University, Khon Kaen, Thailand
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10
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Kotsanopoulos KV, Exadactylos A, Gkafas GA, Martsikalis PV, Parlapani FF, Boziaris IS, Arvanitoyannis IS. The use of molecular markers in the verification of fish and seafood authenticity and the detection of adulteration. Compr Rev Food Sci Food Saf 2021; 20:1584-1654. [PMID: 33586855 DOI: 10.1111/1541-4337.12719] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 12/17/2020] [Accepted: 01/10/2021] [Indexed: 12/11/2022]
Abstract
The verification of authenticity and detection of food mislabeling are elements that have been of high importance for centuries. During the last few decades there has been an increasing consumer demand for the verification of food identity and the implementation of stricter controls around these matters. Fish and seafood are among the most easily adulterated foodstuffs mainly due to the significant alterations of the species' morphological characteristics that occur during the different types of processing, which render the visual identification of the animals impossible. Even simple processes, such as filleting remove very important morphological elements and suffice to prevent the visual identification of species in marketed products. Novel techniques have therefore been developed that allow identification of species, the differentiation between species and also the differentiation of individuals that belong to the same species but grow in different populations and regions. Molecular markers have been used during the last few decades to fulfill this purpose and several improvements have been implemented rendering their use applicable to a commercial scale. The reliability, accuracy, reproducibility, and time-and cost-effectiveness of these techniques allowed them to be established as routine methods in the industry and research institutes. This review article aims at presenting the most important molecular markers used for the authentication of fish and seafood. The most important techniques are described, and the results of numerous studies are outlined and discussed, allowing interested parties to easily access and compare information about several techniques and fish/seafood species.
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Affiliation(s)
- Konstantinos V Kotsanopoulos
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
| | - Athanasios Exadactylos
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
| | - George A Gkafas
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
| | - Petros V Martsikalis
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
| | - Foteini F Parlapani
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
| | - Ioannis S Boziaris
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
| | - Ioannis S Arvanitoyannis
- Department of Ichthyology & Aquatic Environment, School of Agricultural Sciences, University of Thessaly, Volos, Greece
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11
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Sharma L, Watts E, Singh P. High resolution real-time PCR melting curve assay for identification of top five Penaeidae shrimp species. Lebensm Wiss Technol 2020. [DOI: 10.1016/j.lwt.2020.109983] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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12
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Mabood F, Boqué R, Alkindi A, Al-Harrasi A, Al Amri I, Boukra S, Jabeen F, Hussain J, Abbas G, Naureen Z, Haq QM, Shah H, Khan A, Khalaf S, Kadim I. Fast detection and quantification of pork meat in other meats by reflectance FT-NIR spectroscopy and multivariate analysis. Meat Sci 2020; 163:108084. [DOI: 10.1016/j.meatsci.2020.108084] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 02/06/2020] [Accepted: 02/07/2020] [Indexed: 02/06/2023]
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13
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Basanisi MG, La Bella G, Nobili G, Coppola R, Damato AM, Cafiero MA, La Salandra G. Application of the novel Droplet digital PCR technology for identification of meat species. Int J Food Sci Technol 2020. [DOI: 10.1111/ijfs.14486] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Maria Grazia Basanisi
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
| | - Gianfranco La Bella
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
| | - Gaia Nobili
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
| | - Rosa Coppola
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
| | - Annita Maria Damato
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
| | - Maria Assunta Cafiero
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
| | - Giovanna La Salandra
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZS PB) Via Manfredonia, 20 71121 Foggia Italy
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14
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Sohaib M, Zafar MS, Arshad MS, Nauman K, Malhi IY. Evaluation of Quality and Safety Attributes of Slaughtered Versus Dead Chicken Birds Meat. BRAZILIAN JOURNAL OF POULTRY SCIENCE 2020. [DOI: 10.1590/1806-9061-2019-1201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- M Sohaib
- University of Veterinary and Animal Sciences, Pakistan
| | - MS Zafar
- University of Veterinary and Animal Sciences, Pakistan
| | - MS Arshad
- Government College University, Pakistan
| | - K Nauman
- University of Veterinary and Animal Sciences, Pakistan
| | - IY Malhi
- University of Veterinary and Animal Sciences, Pakistan
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15
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Zhang X, Han D, Chen X, Zhao X, Cheng J, Liu Y. Combined use of fatty acid profile and fatty acid δ13C fingerprinting for origin traceability of scallops (Patinopecten yessoensis, Chlamys farreri, and Argopecten irradians). Food Chem 2019; 298:124966. [DOI: 10.1016/j.foodchem.2019.124966] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 05/16/2019] [Accepted: 06/08/2019] [Indexed: 01/18/2023]
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16
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Fraudulent species substitution in e-commerce of protected denomination origin (pdo) products. J Food Compost Anal 2019. [DOI: 10.1016/j.jfca.2019.03.018] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Böhme K, Calo-Mata P, Barros-Velázquez J, Ortea I. Review of Recent DNA-Based Methods for Main Food-Authentication Topics. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:3854-3864. [PMID: 30901215 DOI: 10.1021/acs.jafc.8b07016] [Citation(s) in RCA: 95] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Adulteration and mislabeling of food products and the commercial fraud derived, either intentionally or not, is a global source of economic fraud to consumers but also to all stakeholders involved in food production and distribution. Legislation has been enforced all over the world aimed at guaranteeing the authenticity of the food products all along the distribution chain, thereby avoiding food fraud and adulteration. Accordingly, there is a growing need for new analytical methods able to verify that all the ingredients included in a foodstuff match the qualities claimed by the manufacturer or distributor. In this sense, the improved performance of most recent DNA-based tools in term of sensitivity, multiplexing ability, high-throughput, and relatively low-cost give them a game-changing role in food-authenticity-related topics. Here, we provide a thorough and updated vision on the recently reported approaches that are applying these DNA-based tools to assess the authenticity of food components and products.
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Affiliation(s)
- Karola Böhme
- Department of Analytical Chemistry, Nutrition and Food Science , University of Santiago de Compostela , E-27002 Lugo , Spain
| | - Pilar Calo-Mata
- Department of Analytical Chemistry, Nutrition and Food Science , University of Santiago de Compostela , E-27002 Lugo , Spain
| | - Jorge Barros-Velázquez
- Department of Analytical Chemistry, Nutrition and Food Science , University of Santiago de Compostela , E-27002 Lugo , Spain
| | - Ignacio Ortea
- Proteomics Unit , Maimonides Institute for Biomedical Research (IMIBIC) , E-14004 Córdoba , Spain
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18
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Chatterjee NS, Chevallier OP, Wielogorska E, Black C, Elliott CT. Simultaneous authentication of species identity and geographical origin of shrimps: Untargeted metabolomics to recurrent biomarker ions. J Chromatogr A 2019; 1599:75-84. [PMID: 30967241 DOI: 10.1016/j.chroma.2019.04.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 02/18/2019] [Accepted: 04/01/2019] [Indexed: 01/13/2023]
Abstract
Mandatory disclosure of the species identity, production method, and geographical origin are embedded in the regulations and traceability systems, governing international seafood trade. A high-resolution mass spectrometry-based metabolomics approach could simultaneously authenticate the species identity and geographical origin of commercially important shrimps. The highly innovative approach spared the need for multiple testing methods which are in routine use currently. A robust chemometric model, developed using the metabolite fingerprint dataset, could accurately predict the species identity of the shrimp samples. Subsequently, species-specific biomarkers were discovered and a tandem mass spectrometry method for authentication of the species was developed. Two other chemometric models from the metabolomics experiment accurately predicted the geographical origin of king prawns and tiger prawns. The study has shown for the first time that food-metabolomics along with chemometrics can simultaneously check for multiple seafood fraud issues in the global seafood supply-chain.
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Affiliation(s)
- Niladri S Chatterjee
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, United Kingdom; ICAR-Central Institute of Fisheries Technology, Cochin, India.
| | - Olivier P Chevallier
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, United Kingdom; Mass Spectrometry Core Technology Unit, Queen's University Belfast, United Kingdom
| | - Ewa Wielogorska
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, United Kingdom; School of Pharmacy, Queen's University Belfast, United Kingdom; University of Chemistry and Technology, Department of Food Analysis and Nutrition, Prague, Czech Republic
| | - Connor Black
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, United Kingdom
| | - Christopher T Elliott
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, United Kingdom
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19
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Ballin NZ, Laursen KH. To target or not to target? Definitions and nomenclature for targeted versus non-targeted analytical food authentication. Trends Food Sci Technol 2019. [DOI: 10.1016/j.tifs.2018.09.025] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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20
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Delaporte G, Cladière M, Jouan-Rimbaud Bouveresse D, Camel V. Untargeted food contaminant detection using UHPLC-HRMS combined with multivariate analysis: Feasibility study on tea. Food Chem 2019; 277:54-62. [DOI: 10.1016/j.foodchem.2018.10.089] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 09/21/2018] [Accepted: 10/18/2018] [Indexed: 01/08/2023]
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21
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Costa C, Pinsino A, Bonaventura R, Russo R, Zito F, Matranga V. A pilot study for an innovative approach highlighting Actin and COI mRNAs as potential biomarkers of quality of the edible crustacean Nephrops norvegicus (Linnaeus, 1758). Food Control 2019. [DOI: 10.1016/j.foodcont.2018.10.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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22
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Kumari S, Kumar RR, Mendiratta SK, Kumar D, Rana P, Kumar D, Jawla J. Species-specific loop-mediated isothermal amplification (LAMP) assay for identification of tissue of cattle origin by targeting mitochondrial gene sequences. 3 Biotech 2019; 9:69. [PMID: 30729093 DOI: 10.1007/s13205-019-1595-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Accepted: 01/24/2019] [Indexed: 01/15/2023] Open
Abstract
The present study was carried out with the objective of development of species-specific loop-mediated isothermal amplification (LAMP) assay for identification of tissue of cattle origin. The cattle-specific LAMP primer set was designed by targeting mitochondrial D-loop gene. The conditions for LAMP reaction for amplification of template DNA from cattle using designed cattle-specific primer set were optimized for the components of mixture and temperature of reaction. Amplified products were analysed using SYBR Green I dye and by agarose gel electrophoresis. The developed species-specific LAMP assay was evaluated for its specificity, sensitivity and validated in laboratory on samples from known, coded, binary meat admixture with other than cattle at relative percentage of 20%, 10%, 5% and 1%, Phire tissue direct PCR master mix treated tissues of cattle and on species-specific polymerase chain reaction assay positive samples. The developed LAMP assay using self-designed primer set was highly specific, amplifying the DNA template exclusively from cattle tissue under the optimized LAMP reaction conditions. The sensitivity assay using serially diluted DNA templates revealed lowest level of detection as 0.01 ng of absolute DNA from target species. Laboratory validation substantiated the accuracy of assay in known/unknown (coded) samples and up to the 1% level of admixture in binary meat sample. DNA present in supernatant of Phire Animal tissue kit treated samples were also amplified successfully eliminating the extra step of extraction of genomic DNA. The developed assays exhibited comparable results with previously established species-specific PCR assay taken as gold standards. Thus, it was concluded that developed species-specific loop-mediated isothermal amplification assay was effective in identification of tissue of cattle origin.
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Affiliation(s)
- Sarita Kumari
- Department of Livestock Products Technology, PGIVER, RAJUVAS, Jaipur, India
| | - Rajiv Ranjan Kumar
- 2Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122 India
| | - Sanjod Kumar Mendiratta
- 2Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122 India
| | - Deepak Kumar
- 3Division of Veterinary Biotechnology, IVRI, Izatnagar, India
| | - Preeti Rana
- Department of Livestock Products Technology, CVASc, DUVASU, Mathura, India
| | - Dhananjay Kumar
- 2Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122 India
| | - Jyoti Jawla
- 2Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatnagar, Bareilly, 243122 India
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Spielmann G, Diedrich J, Haszprunar G, Busch U, Huber I. Comparison of three DNA marker regions for identification of food relevant crustaceans of the order Decapoda. Eur Food Res Technol 2018. [DOI: 10.1007/s00217-018-3199-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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24
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Hu L, Zhang H, Zhang X, Zhang T, Chang Y, Zhao X, Xu J, Xue Y, Li Z, Wang Y, Xue C. Identification of Peptide Biomarkers for Discrimination of Shrimp Species through SWATH-MS-Based Proteomics and Chemometrics. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:10567-10574. [PMID: 30208707 DOI: 10.1021/acs.jafc.8b04375] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Incorrect labeling and adulteration of shrimp occurs due to interspecies similarities and carapace removal during processing. This study attempted to identify three related commercial shrimp species of the order Decapoda: Marsupenaeus japonicus, Fenneropenaeus chinensis, and Litopenaeus vannamei. All measurable trypsin-digested peptides in the individual shrimp were detected using ultrahigh-performance liquid chromatography quadrupole time-of-flight (UPLC-Q-TOF) mass spectrometry with sequential window acquisition of all theoretical fragment ion spectra (SWATH) data-independent acquisition. Further analysis of peptide biomarkers was carried out with an orthogonal partial least-squares discriminant analysis (OPLS-DA) model. BLAST was used for species-specific analysis. Subsequently, multiple reaction monitoring (MRM) methods were developed for sensitivity and selectivity screening of the selected peptides, and 27 were identified as biomarkers allowing rapid and accurate discrimination of shrimp species without high-resolution mass spectrometry or statistical model building. These strategies could be applied in authentication of other products containing highly homologous proteomes.
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Affiliation(s)
- Lingping Hu
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Hongwei Zhang
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Xiaomei Zhang
- Technical Center of Inspection and Quarantine , Shandong Entry-Exit Inspection and Quarantine Bureau , No. 70 Qutangxia Road , Qingdao , Shandong Province 266002 , P.R. China
| | - Tiantian Zhang
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Yaoguang Chang
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Xue Zhao
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Jie Xu
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Yong Xue
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Zhaojie Li
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Yuming Wang
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
| | - Changhu Xue
- College of Food Science and Engineering , Ocean University of China , No. 5 Yu Shan Road , Qingdao , Shandong Province 266003 , P.R. China
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Abstract
Peptidomics is the comprehensive characterization of peptides from biological sources mainly by HPLC and mass spectrometry. Mass spectrometry allows the detection of a multitude of single peptides in complex mixtures. The term first appeared in full papers in the year 2001, after over 100 years of peptide research with a main focus on one or a few specific peptides. Within the last 15 years, this new field has grown to over 1200 publications. Mass spectrometry techniques, in combination with other analytical methods, were developed for the fast and comprehensive analysis of peptides in proteomics and specifically adjusted to implement peptidomics technologies. Although peptidomics is closely linked to proteomics, there are fundamental differences with conventional bottom-up proteomics. The development of peptidomics is described, including the most important implementations for its technological basis. Different strategies are covered which are applied to several important applications, such as neuropeptidomics and discovery of bioactive peptides or biomarkers. This overview includes links to all other chapters in the book as well as recent developments of separation, mass spectrometric, and data processing technologies. Additionally, some new applications in food and plant peptidomics as well as immunopeptidomics are introduced.
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26
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High resolution melting analysis of a COI mini-barcode as a new approach for Penaeidae shrimp species discrimination. Food Control 2017. [DOI: 10.1016/j.foodcont.2017.06.016] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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27
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28
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Hidayat B, Wea A, Andriati N. Physicochemical, sensory attributes and protein profile by SDS-PAGE of beef sausage substituted with texturized vegetable protein. FOOD RESEARCH 2017. [DOI: 10.26656/fr.2017.2(1).106] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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29
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Suwannarat S, Sangthong D, Samipak S, Sangthong P. A multiplex PCR assay for the identification of five commercially important Portunid crabs: Portunus pelagicus, P. gladiator, P. sanguinolentus, Charybdis natator, and C. feriatus. FOOD BIOTECHNOL 2017. [DOI: 10.1080/08905436.2017.1331452] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Songmeung Suwannarat
- Department of Genetics, Faculty of Science, Kasetsart University, Bangkok, Thailand
| | - Danai Sangthong
- Department of Animal Husbandry and Basic Professional Sciences, Faculty of Veterinary Medicine, Mahanakorn University of Technology, Bangkok, Thailand
| | - Sompid Samipak
- Department of Genetics, Faculty of Science, Kasetsart University, Bangkok, Thailand
| | - Pradit Sangthong
- Department of Genetics, Faculty of Science, Kasetsart University, Bangkok, Thailand
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Ha J, Kim S, Lee J, Lee S, Lee H, Choi Y, Oh H, Yoon Y. Identification of Pork Adulteration in Processed Meat Products Using the Developed Mitochondrial DNA-Based Primers. Korean J Food Sci Anim Resour 2017; 37:464-468. [PMID: 28747833 PMCID: PMC5516074 DOI: 10.5851/kosfa.2017.37.3.464] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 06/11/2017] [Accepted: 06/12/2017] [Indexed: 11/06/2022] Open
Abstract
The identification of pork in commercially processed meats is one of the most crucial issues in the food industry because of religious food ethics, medical purposes, and intentional adulteration to decrease production cost. This study therefore aimed to develop a method for the detection of pork adulteration in meat products using primers specific for pig mitochondrial DNA. Mitochondrial DNA sequences for pig, cattle, chicken, and sheep were obtained from GenBank and aligned. The 294-bp mitochondrial DNA D-loop region was selected as the pig target DNA sequence and appropriate primers were designed using the MUSCLE program. To evaluate primer sensitivity, pork-beef-chicken mixtures were prepared as follows: i) 0% pork-50% beef-50% chicken, ii) 1% pork-49.5% beef-49.5% chicken, iii) 2% pork-49% beef-49% chicken, iv) 5% pork-47.5% beef-47.5% chicken, v) 10% pork-45% beef-45% chicken, and vi) 100% pork-0% beef-0% chicken. In addition, a total of 35 commercially packaged products, including patties, nuggets, meatballs, and sausages containing processed chicken, beef, or a mixture of various meats, were purchased from commercial markets. The primers developed in our study were able to detect as little as 1% pork in the heat treated pork-beef-chicken mixtures. Of the 35 processed products, three samples were pork positive despite being labeled as beef or chicken only or as a beef-chicken mix. These results indicate that the developed primers could be used to detect pork adulteration in various processed meat products for application in safeguarding religious food ethics, detecting allergens, and preventing food adulteration.
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Affiliation(s)
- Jimyeong Ha
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Sejeong Kim
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Jeeyeon Lee
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Soomin Lee
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Heeyoung Lee
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Yukyung Choi
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Hyemin Oh
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
| | - Yohan Yoon
- Department of Food and Nutrition, Sookmyung Women’s University, Seoul 04310, Korea
- Risk Analysis Research Center, Sookmyung Women’s University, Seoul 04310, Korea
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Espiñeira M, Vieites JM. FAST Real Time PCR for control of intra-species recycling in aquaculture feed, focused to the most relevant fish species farmed in Europe. Food Chem 2016; 204:352-357. [DOI: 10.1016/j.foodchem.2016.02.114] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2015] [Revised: 09/10/2015] [Accepted: 02/01/2016] [Indexed: 10/22/2022]
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32
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Review on proteomics for food authentication. J Proteomics 2016; 147:212-225. [PMID: 27389853 DOI: 10.1016/j.jprot.2016.06.033] [Citation(s) in RCA: 114] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Revised: 06/21/2016] [Accepted: 06/28/2016] [Indexed: 12/24/2022]
Abstract
UNLABELLED Consumers have the right to know what is in the food they are eating. Accordingly, European and global food regulations require that the provenance of the food can be guaranteed from farm to fork. Many different instrumental techniques have been proposed for food authentication. Although traditional methods are still being used, new approaches such as genomics, proteomics, and metabolomics are helping to complement existing methodologies for verifying the claims made about certain food products. During the last decade, proteomics (the large-scale analysis of proteins in a particular biological system at a particular time) has been applied to different research areas within food technology. Since proteins can be used as markers for many properties of a food, even indicating processes to which the food has been subjected, they can provide further evidence of the foods labeling claim. This review is a comprehensive and updated overview of the applications, drawbacks, advantages, and challenges of proteomics for food authentication in the assessment of the foods compliance with labeling regulations and policies. SIGNIFICANCE This review paper provides a comprehensive and critical overview of the application of proteomics approaches to determine the authenticity of several food products updating the performances and current limitations of the applied techniques in both laboratory and industrial environments.
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Staats M, Arulandhu AJ, Gravendeel B, Holst-Jensen A, Scholtens I, Peelen T, Prins TW, Kok E. Advances in DNA metabarcoding for food and wildlife forensic species identification. Anal Bioanal Chem 2016; 408:4615-30. [PMID: 27178552 PMCID: PMC4909793 DOI: 10.1007/s00216-016-9595-8] [Citation(s) in RCA: 109] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Revised: 04/19/2016] [Accepted: 04/20/2016] [Indexed: 12/18/2022]
Abstract
Species identification using DNA barcodes has been widely adopted by forensic scientists as an effective molecular tool for tracking adulterations in food and for analysing samples from alleged wildlife crime incidents. DNA barcoding is an approach that involves sequencing of short DNA sequences from standardized regions and comparison to a reference database as a molecular diagnostic tool in species identification. In recent years, remarkable progress has been made towards developing DNA metabarcoding strategies, which involves next-generation sequencing of DNA barcodes for the simultaneous detection of multiple species in complex samples. Metabarcoding strategies can be used in processed materials containing highly degraded DNA e.g. for the identification of endangered and hazardous species in traditional medicine. This review aims to provide insight into advances of plant and animal DNA barcoding and highlights current practices and recent developments for DNA metabarcoding of food and wildlife forensic samples from a practical point of view. Special emphasis is placed on new developments for identifying species listed in the Convention on International Trade of Endangered Species (CITES) appendices for which reliable methods for species identification may signal and/or prevent illegal trade. Current technological developments and challenges of DNA metabarcoding for forensic scientists will be assessed in the light of stakeholders' needs.
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Affiliation(s)
- Martijn Staats
- RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands.
| | - Alfred J Arulandhu
- RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands
| | - Barbara Gravendeel
- Naturalis Biodiversity Center, Sylviusweg 72, P.O. Box 9517, Leiden, The Netherlands
| | - Arne Holst-Jensen
- Norwegian Veterinary Institute, Ullevaalsveien 68, P.O. Box 750, Sentrum, 0106, Oslo, Norway
| | - Ingrid Scholtens
- RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands
| | - Tamara Peelen
- Dutch Customs Laboratory, Kingsfordweg 1, 1043 GN, Amsterdam, The Netherlands
| | - Theo W Prins
- RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands
| | - Esther Kok
- RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands
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34
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Mazzeo MF, Siciliano RA. Proteomics for the authentication of fish species. J Proteomics 2016; 147:119-124. [PMID: 26947551 DOI: 10.1016/j.jprot.2016.03.007] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Revised: 02/15/2016] [Accepted: 03/01/2016] [Indexed: 11/28/2022]
Abstract
UNLABELLED Assessment of seafood authenticity and origin, mainly in the case of processed products (fillets, sticks, baby food) represents the crucial point to prevent fraudulent deceptions thus guaranteeing market transparency and consumers health. The most dangerous practice that jeopardies fish safety is intentional or unintentional mislabeling, originating from the substitution of valuable fish species with inferior ones. Conventional analytical methods for fish authentication are becoming inadequate to comply with the strict regulations issued by the European Union and with the increase of mislabeling due to the introduction on the market of new fish species and market globalization. This evidence prompts the development of high-throughput approaches suitable to identify unambiguous biomarkers of authenticity and screen a large number of samples with minimal time consumption. Proteomics provides suitable and powerful tools to investigate main aspects of food quality and safety and has given an important contribution in the field of biomarkers discovery applied to food authentication. This report describes the most relevant methods developed to assess fish identity and offers a perspective on their potential in the evaluation of fish quality and safety thus depicting the key role of proteomics in the authentication of fish species and processed products. BIOLOGICAL SIGNIFICANCE The assessment of fishery products authenticity is a main issue in the control quality process as deceptive practices could imply severe health risks. Proteomics based methods could significantly contribute to detect falsification and frauds, thus becoming a reliable operative first-line testing resource in food authentication.
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Affiliation(s)
- Maria Fiorella Mazzeo
- Centro di Spettrometria di Massa Proteomica e Biomolecolare, Istituto di Scienze dell'Alimentazione, CNR, via Roma 64, 83100 Avellino, Italy.
| | - Rosa Anna Siciliano
- Centro di Spettrometria di Massa Proteomica e Biomolecolare, Istituto di Scienze dell'Alimentazione, CNR, via Roma 64, 83100 Avellino, Italy.
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Kim H, Kumar KS, Hwang SY, Kang BC, Moon HB, Shin KH. Utility of Stable Isotope and Cytochrome Oxidase I Gene Sequencing Analyses in Inferring Origin and Authentication of Hairtail Fish and Shrimp. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:5548-5556. [PMID: 25980806 DOI: 10.1021/acs.jafc.5b01469] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Mislabeling of fishery products continues to be a serious threat to the global market. Consequently, there is an urgent necessity to develop tools for authenticating and establishing their true origin. This investigation evaluates the suitability of stable isotopes and cytochrome oxidase I (COI) sequencing in identifying and tracing the origin of hairtail fish and shrimp. By use of COI sequencing, the hairtail fish samples were identified as Trichiurus japonicus and Trichiurus lepturus, while the shrimp samples were identified as Pandalus borealis, Marsupenaeus japonicus, Fenneropenaeus chinensis, Litopenaeus vannamei, Penaeus monodon, and Solenocera crassicornis. Linear discriminant analysis (LDA) of stable isotopes further categorized the individuals of the same species based on the country of origin. Natural and farmed shrimp (from the same country) were distinctly differentiated on the basis of stable isotope values. Therefore, these two methods could be cooperatively utilized to identify and authenticate fishery products, the utilization of which would enhance transparency and fair trade.
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Affiliation(s)
| | | | - Seung Yong Hwang
- §Biocore Company Limited, Guro-gu, Seoul 152-796, Republic of Korea
| | - Byeong-Chul Kang
- ∥Insilicogen Incorporated, Gweonseon-gu, Suwon 440-825, Republic of Korea
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37
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Butt AQ, McArdle A, Gibson DS, FitzGerald O, Pennington SR. Psoriatic Arthritis Under a Proteomic Spotlight: Application of Novel Technologies to Advance Diagnosis and Management. Curr Rheumatol Rep 2015; 17:35. [DOI: 10.1007/s11926-015-0509-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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38
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Ortea I, Gallardo JM. Investigation of production method, geographical origin and species authentication in commercially relevant shrimps using stable isotope ratio and/or multi-element analyses combined with chemometrics: An exploratory analysis. Food Chem 2015; 170:145-53. [DOI: 10.1016/j.foodchem.2014.08.049] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Revised: 06/24/2014] [Accepted: 08/11/2014] [Indexed: 10/24/2022]
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39
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Occurrence of mislabeling in meat products using DNA-based assay. Journal of Food Science and Technology 2014; 52:2479-84. [PMID: 25829637 DOI: 10.1007/s13197-014-1552-y] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 08/25/2014] [Accepted: 09/04/2014] [Indexed: 12/27/2022]
Abstract
Considering that the authentication of food contents is one of the most important issues for the food quality sector, and given the increasing demand for transparency in the meat industry followed the horsemeat scandal in Europe, this study investigates processed-meat products from Italian markets and supermarkets using the mitochondrial cytochrome b gene qualitative PCR identification system in order to verify any species substitution or mislabeling. The results revealed a high substitution rate among the meat products, highlighting a mislabeling rate of 57 %, and consequently, considerable discordance with the indications on the labels, which raises significant food-safety and consumer-protection concerns.
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40
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Shishkin SS, Kovalev LI, Kovaleva MA, Ivanov AV, Eremina LS, Sadykhov EG. The application of proteomic technologies for the analysis of muscle proteins of farm animals used in the meat industry (Review). APPL BIOCHEM MICRO+ 2014. [DOI: 10.1134/s0003683814050093] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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41
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Authentication of raw and processed tuna from Indonesian markets using DNA barcoding, nuclear gene and character-based approach. Eur Food Res Technol 2014. [DOI: 10.1007/s00217-014-2266-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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42
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Lin CC, Fung LL, Chan PK, Lee CM, Chow KF, Cheng SH. A rapid low-cost high-density DNA-based multi-detection test for routine inspection of meat species. Meat Sci 2014; 96:922-9. [DOI: 10.1016/j.meatsci.2013.09.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2013] [Revised: 08/17/2013] [Accepted: 09/01/2013] [Indexed: 10/26/2022]
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43
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A universal method for species identification of mammals utilizing next generation sequencing for the analysis of DNA mixtures. PLoS One 2013; 8:e83761. [PMID: 24358309 PMCID: PMC3865308 DOI: 10.1371/journal.pone.0083761] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 11/07/2013] [Indexed: 11/19/2022] Open
Abstract
Species identification can be interesting in a wide range of areas, for example, in forensic applications, food monitoring and in archeology. The vast majority of existing DNA typing methods developed for species determination, mainly focuses on a single species source. There are, however, many instances where all species from mixed sources need to be determined, even when the species in minority constitutes less than 1 % of the sample. The introduction of next generation sequencing opens new possibilities for such challenging samples. In this study we present a universal deep sequencing method using 454 GS Junior sequencing of a target on the mitochondrial gene 16S rRNA. The method was designed through phylogenetic analyses of DNA reference sequences from more than 300 mammal species. Experiments were performed on artificial species-species mixture samples in order to verify the method's robustness and its ability to detect all species within a mixture. The method was also tested on samples from authentic forensic casework. The results showed to be promising, discriminating over 99.9 % of mammal species and the ability to detect multiple donors within a mixture and also to detect minor components as low as 1 % of a mixed sample.
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44
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Gallardo JM, Ortea I, Carrera M. Proteomics and its applications for food authentication and food-technology research. Trends Analyt Chem 2013. [DOI: 10.1016/j.trac.2013.05.019] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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45
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Matrix-assisted laser desorption ionization mass spectrometry for identification of shrimp. Anal Chim Acta 2013; 794:55-9. [DOI: 10.1016/j.aca.2013.07.014] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Revised: 06/19/2013] [Accepted: 07/05/2013] [Indexed: 11/18/2022]
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46
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Barik SK, Banerjee S, Bhattacharjee S, Das Gupta SK, Mohanty S, Mohanty BP. Proteomic Analysis of Sarcoplasmic Peptides of Two Related Fish Species for Food Authentication. Appl Biochem Biotechnol 2013; 171:1011-21. [DOI: 10.1007/s12010-013-0384-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2013] [Accepted: 07/01/2013] [Indexed: 11/28/2022]
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