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Mika T, Kalnins M, Spalvins K. The use of droplet-based microfluidic technologies for accelerated selection of Yarrowia lipolytica and Phaffia rhodozyma yeast mutants. Biol Methods Protoc 2024; 9:bpae049. [PMID: 39114747 PMCID: PMC11303513 DOI: 10.1093/biomethods/bpae049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 06/24/2024] [Accepted: 07/09/2024] [Indexed: 08/10/2024] Open
Abstract
Microorganisms are widely used for the industrial production of various valuable products, such as pharmaceuticals, food and beverages, biofuels, enzymes, amino acids, vaccines, etc. Research is constantly carried out to improve their properties, mainly to increase their productivity and efficiency and reduce the cost of the processes. The selection of microorganisms with improved qualities takes a lot of time and resources (both human and material); therefore, this process itself needs optimization. In the last two decades, microfluidics technology appeared in bioengineering, which allows for manipulating small particles (from tens of microns to nanometre scale) in the flow of liquid in microchannels. The technology is based on small-volume objects (microdroplets from nano to femtolitres), which are manipulated using a microchip. The chip is made of an optically transparent inert to liquid medium material and contains a series of channels of small size (<1 mm) of certain geometry. Based on the physical and chemical properties of microparticles (like size, weight, optical density, dielectric constant, etc.), they are separated using microsensors. The idea of accelerated selection of microorganisms is the application of microfluidic technologies to separate mutants with improved qualities after mutagenesis. This article discusses the possible application and practical implementation of microfluidic separation of mutants, including yeasts like Yarrowia lipolytica and Phaffia rhodozyma after chemical mutagenesis will be discussed.
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Affiliation(s)
- Taras Mika
- Institute of Energy Systems and Environment, Riga Technical University, 12 – K1 Āzene street, Riga, LV-1048, Latvia
| | - Martins Kalnins
- Institute of Energy Systems and Environment, Riga Technical University, 12 – K1 Āzene street, Riga, LV-1048, Latvia
| | - Kriss Spalvins
- Institute of Energy Systems and Environment, Riga Technical University, 12 – K1 Āzene street, Riga, LV-1048, Latvia
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Chaudhuri J, Mandal TK, Bandyopadhyay D. Kelvin-Helmholtz Instability Augmented by von Kármán Vortex Shedding during an Oil Droplet Impact on a Water Pool. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:800-812. [PMID: 36597931 DOI: 10.1021/acs.langmuir.2c02761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The impact of an oil droplet on a water surface has been explored with the aid of computational fluid dynamics simulations. The study reveals the details of the spatiotemporal evolution of such a ternary system with a triplet of interfaces, e.g., air-water, oil-water, and oil-air, when the impact velocity of the oil droplet with the water surface is high. The oil droplet is found to flatten, spread, stretch, and eventually dewet on the water surface of the deep crater to show a host of interesting post-impact flow morphologies. Furthermore, at higher impact velocities, the formation of a biphasic oil-water crown is observed followed by the ejection of secondary water droplets from the crown tip due to capillary instability. The rapidly spreading oil film on the "crater" of the water surface is found to undergo Kelvin-Helmholtz instability before dewetting the same due to cohesion failure. Subsequently, the formation of an array of secondary oil droplets is observed during the process of dewetting. The dominant wavelength evaluated from the linear stability analysis of a representative flow system could faithfully predict the simulated spacing of dewetted oil droplets floating on the crater. Importantly, the variations in Laplace pressure around the curvatures of the undulatory interfaces along with sharp viscosity gradients across the three-phase contact line is found to engender interesting recirculation patterns, which eventually shed to form a coherent wake region in air near the crater. We also uncover the conditions under which the counter-rotating vortices shed along the oil-water interface resembling a von Kármán vortex street.
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Affiliation(s)
- Joydip Chaudhuri
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
| | - Tapas Kumar Mandal
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
- Centre for Nanotechnology, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
- Jyoti and Bhupat Mehta School of Health Sciences and Technology, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
| | - Dipankar Bandyopadhyay
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
- Centre for Nanotechnology, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
- Jyoti and Bhupat Mehta School of Health Sciences and Technology, Indian Institute of Technology Guwahati, Guwahati, Assam781039, India
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Chaudhuri J, Mandal TK, Bandyopadhyay D. Influence of the pre-impact shape of an oil droplet on the post-impact flow dynamics at air-water interface. SOFT MATTER 2022; 18:4102-4117. [PMID: 35579045 DOI: 10.1039/d2sm00219a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
We computationally explore the effects of pre-impact shape of an oil droplet on the spatiotemporal dynamics after the droplet impacts an air-water interface. Simulations reveal that the initial shape of the impacting oil-droplet alters the post-impact transient flow structures during the evolution. The spherical and oblate drop spreads over the crater to manifest interesting flow morphologies including the formation of oil-toroids and compound oil-droplets. However, the prolate drop impinges much deeper into the water pool after impact to create a few more exclusive flow features, such as, interface overturning, vortex shedding and formation of secondary droplets. The temporal variation of the crater depth shows distinct three stage dynamics, which can be explained by the generic energy analysis of the entire system. The combined theoretical and numerical energy analyses reveal the influences of the pre-impact drop shape and their effects on the subsequent energy conversion after the impact takes place. The analysis also reveals that the initial surface and kinetic energies are different for non-spherical droplets than for the spherical ones. The conversion of such excess surface energy due to the non-spherical curvature into kinetic energy dictates the impact and subsequently the crater dynamics of such systems. Such influences largely lead to the exclusive flow patterns demonstrated here. Concisely, this study presents a tri-phasic computational model, which is capable of analyzing the salient features of the impact and splash dynamics of the non-spherical droplets into a water continuum.
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Affiliation(s)
- Joydip Chaudhuri
- Department of Chemical Engineering, Indian Institute of Technology, Guwahati, Assam 781039, India.
| | - Tapas Kumar Mandal
- Department of Chemical Engineering, Indian Institute of Technology, Guwahati, Assam 781039, India.
- Centre for Nanotechnology, Indian Institute of Technology, Guwahati, Assam 781039, India
- School of Health Sciences and Technology, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Dipankar Bandyopadhyay
- Department of Chemical Engineering, Indian Institute of Technology, Guwahati, Assam 781039, India.
- Centre for Nanotechnology, Indian Institute of Technology, Guwahati, Assam 781039, India
- School of Health Sciences and Technology, Indian Institute of Technology, Guwahati, Assam 781039, India
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Chaudhuri J. Magnetic-field- and thermal-radiation-induced entropy generation in a multiphase nonisothermal plane Poiseuille flow. Phys Rev E 2021; 104:065105. [PMID: 35030912 DOI: 10.1103/physreve.104.065105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 11/23/2021] [Indexed: 12/28/2022]
Abstract
The effect of radiative heat transfer on the entropy generation in a two-phase nonisothermal fluid flow between two infinite horizontal parallel plates under the influence of a constant pressure gradient and transverse noninvasive magnetic field have been explored. Both fluids are considered to be viscous, incompressible, immiscible, Newtonian, and electrically conducting. The governing equations in Cartesian coordinates are solved analytically with appropriate boundary conditions to obtain the velocity and temperature profile inside the channel. Application of a transverse magnetic field is found to reduce the throughput and the temperature distribution of the fluids in a pressure-driven flow. The temperature and fluid flow inside the channel can also be noninvasively altered by tuning the magnetic field intensity, temperature difference between the channel walls and the fluids, and several intrinsic fluid properties. The entropy generation due to the heat transfer, magnetic field, and fluid flow irreversibilities can be controlled by altering the Hartmann number, radiation parameter, Brinkmann number, filling ratio, and ratios of fluid viscosities and thermal and electrical conductivities. The surfaces of the channel wall are found to act as a strong source of entropy generation and heat transfer irreversibility. The rate of heat transfer at the channel walls can also be tweaked by the magnetic field intensity, temperature differences, and fluid properties. The proposed strategies in the present study can be of significance in the design and development of next-generation microscale reactors, micro-heat exchangers, and energy-harvesting devices.
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Affiliation(s)
- Joydip Chaudhuri
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India
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Yang M, Gao Y, Liu Y, Yang G, Zhao CX, Wu KJ. Integration of microfluidic systems with external fields for multiphase process intensification. Chem Eng Sci 2021. [DOI: 10.1016/j.ces.2021.116450] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Saucedo-Espinosa MA, Dittrich PS. In-Droplet Electrophoretic Separation and Enrichment of Biomolecules. Anal Chem 2020; 92:8414-8421. [DOI: 10.1021/acs.analchem.0c01044] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Mario A. Saucedo-Espinosa
- Department of Biosystems Science and Engineering, ETH Zürich, Mattenstrasse 26, 4058 Basel, Switzerland
| | - Petra S. Dittrich
- Department of Biosystems Science and Engineering, ETH Zürich, Mattenstrasse 26, 4058 Basel, Switzerland
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Heidari R, Khosroshahi AR, Sadri B, Esmaeilzadeh E. The Electrohydrodynamic mixer for producing homogenous emulsion of dielectric liquids. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.123592] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Morshed A, Dutta P, Kim MJ. Electrophoretic transport and dynamic deformation of bio-vesicles. Electrophoresis 2019; 40:2584-2591. [PMID: 30993726 PMCID: PMC6718350 DOI: 10.1002/elps.201900025] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 03/21/2019] [Accepted: 04/01/2019] [Indexed: 11/06/2022]
Abstract
Study of the deformation dynamics of cells and other sub-micron vesicles, such as virus and neurotransmitter vesicles are necessary to understand their functional properties. This mechanical characterization can be done by submerging the vesicle in a fluid medium and deforming it with a controlled electric field, which is known as electrodeformation. Electrodeformation of biological and artificial lipid vesicles is directly influenced by the vesicle and surrounding media properties and geometric factors. The problem is compounded when the vesicle is naturally charged, which creates electrophoretic forcing on the vesicle membrane. We studied the electrodeformation and transport of charged vesicles immersed in a fluid media under the influence of a DC electric field. The electric field and fluid-solid interactions are modeled using a hybrid immersed interface-immersed boundary technique. Model results are verified with experimental observations for electric field driven translocation of a virus through a nanopore sensor. Our modeling results show interesting changes in deformation behavior with changing electrical properties of the vesicle and the surrounding media. Vesicle movement due to electrophoresis can also be characterized by the change in local conductivity, which can serve as a potential sensing mechanism for electrodeformation experiments in solid-state nanopore setups.
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Affiliation(s)
- Adnan Morshed
- School of Mechanical and Materials Engineering, Washington State University, Pullman, WA 99164
| | - Prashanta Dutta
- School of Mechanical and Materials Engineering, Washington State University, Pullman, WA 99164
| | - Min Jun Kim
- Department of Mechanical Engineering, Southern Methodist University, Dallas, TX, 75275
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Maity S, Chaudhuri J, Mitra S, Rarotra S, Bandyopadhyay D. Electric field assisted multicomponent reaction in a microfluidic reactor for superior conversion and yield. Electrophoresis 2018; 40:401-409. [PMID: 30511476 DOI: 10.1002/elps.201800377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2018] [Revised: 11/22/2018] [Accepted: 11/22/2018] [Indexed: 11/11/2022]
Abstract
We explore the improvements in yield and conversion of a chemical reaction inside a two-phase microfluidic reactor when subjected to an externally applied alternating current (AC) electric field. A computational fluid dynamic (CFD) framework has been developed to incorporate the descriptions of the two-phase flow, multicomponent transport and reaction, and the Maxwell's stresses generated at oil-water interface owing to the presence of the externally applied electric field. The CFD model ensures that the reactants are flown into a microchannel together with the oil and water phases before the reaction takes place at the interface and products diffuse back to the bulk phases. The study unveils that the variation in the intensity of the AC field helps in converting a two-phase stratified flow into an oil-in-water microemulsion composed of oil slugs, plugs, or droplets. Importantly, the results also suggest that harnessing the vortices inside or outside these flow patterns helps in the improvement in mass transfer across the interface, which can be employed to improve the yield and conversion of a reaction. We have shown an example case of a pseudo-first order reaction for which the variation in frequency and intensity of AC field is found to form higher surface-to-volume-ratio flow patterns having a higher throughput. The convective recirculation in and around these miniaturized flow morphologies increase the rate of mass transfer, mixing of reactant and products, conversion of reactant, and yield of products. The results reported can be of significance in the design and development of future advanced-flow rector technologies.
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Affiliation(s)
- Surjendu Maity
- Centre for Nanotechnology, Indian Institute of Technology Guwahati, Guwahati, India
| | - Joydip Chaudhuri
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, India
| | - Shirsendu Mitra
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, India
| | - Saptak Rarotra
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, India
| | - Dipankar Bandyopadhyay
- Centre for Nanotechnology, Indian Institute of Technology Guwahati, Guwahati, India.,Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati, India
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Kumar S, Sarma B, Dasmahapatra AK, Dalal A, Basu DN, Bandyopadhyay D. Field induced anomalous spreading, oscillation, ejection, spinning, and breaking of oil droplets on a strongly slipping water surface. Faraday Discuss 2017; 199:115-128. [PMID: 28422194 DOI: 10.1039/c6fd00233a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Application of an electric field on an oil droplet floating on the surface of a deionized water bath showed interesting motions such as spreading, oscillation, and ejection. The electric field was generated by connecting a pointed platinum cathode at the top of the oil droplet and a copper anode coated with polymer at the bottom of the water layer. The experimental setup mimicked a conventional electrowetting setup with the exception that the oil was spread on a soft and deformable water isolator. While at relatively lower field intensities we observed spreading of the droplet, at intermediate field intensities the droplet oscillated around the platinum cathode, before ejecting out at a speed as high as ∼5 body lengths per second at even stronger field intensities. The experiments suggested that when the electric field was ramped up abruptly to a particular voltage, any of the spreading, oscillation, or ejection motions of the droplet could be engendered at lower, intermediate and higher field intensities, respectively. However, when the field was ramped up progressively by increasing by a definite amount of voltage per unit time, all three aforementioned motions could be generated simultaneously with the increase in the field intensity. Interestingly, when the aforementioned setup was placed on a magnet, the droplet showed a rotational motion under the influence of the Lorentz force, which was generated because of the coupling of the weak leakage current with the externally applied magnetic field. The spreading, oscillation, ejection, and rotation of the droplet were found to be functions of the oil-water interfacial tension, viscosity, and size of the oil droplet. We developed simple theoretical models to explain the experimental results obtained. Importantly, rotating at a higher speed broke the droplet into a number of smaller ones, owing to the combined influence of the spreading due to the centripetal force and the shear at the oil-water interface. While the oscillatory and rotational motions of the incompressible droplet could be employed as stirrers or impellers inside microfluidic devices for mixing applications, the droplet ejection could be employed for futuristic applications such as payload transport or drug delivery.
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Affiliation(s)
- Sunny Kumar
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India.
| | - Bhaskarjyoti Sarma
- Department of Mechanical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India
| | - Ahsok Kumar Dasmahapatra
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India. and Centre for Nanotechnology, Indian Institute of Technology Guwahati, Assam 781039, India
| | - Amaresh Dalal
- Department of Mechanical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India
| | - Dipankar Narayan Basu
- Department of Mechanical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India
| | - Dipankar Bandyopadhyay
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Assam 781039, India. and Centre for Nanotechnology, Indian Institute of Technology Guwahati, Assam 781039, India
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Timung S, Chaudhuri J, Borthakur MP, Mandal TK, Biswas G, Bandyopadhyay D. Electric field mediated spraying of miniaturized droplets inside microchannel. Electrophoresis 2016; 38:1450-1457. [DOI: 10.1002/elps.201600311] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Revised: 08/27/2016] [Accepted: 09/11/2016] [Indexed: 11/06/2022]
Affiliation(s)
- Seim Timung
- Department of Chemical Engineering; Indian Institute of Technology Guwahati; Guwahati Assam India
| | - Joydip Chaudhuri
- Department of Chemical Engineering; Indian Institute of Technology Guwahati; Guwahati Assam India
| | - Manash Pratim Borthakur
- Department of Mechanical Engineering; Indian Institute of Technology Guwahati; Guwahati Assam India
| | - Tapas Kumar Mandal
- Department of Chemical Engineering; Indian Institute of Technology Guwahati; Guwahati Assam India
- Centre for Nanotechnology; Indian Institute of Technology Guwahati; Guwahati Assam India
| | - Gautam Biswas
- Department of Mechanical Engineering; Indian Institute of Technology Guwahati; Guwahati Assam India
| | - Dipankar Bandyopadhyay
- Department of Chemical Engineering; Indian Institute of Technology Guwahati; Guwahati Assam India
- Centre for Nanotechnology; Indian Institute of Technology Guwahati; Guwahati Assam India
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