Detecting Amphibians in Agricultural Landscapes Using Environmental DNA Reveals the Importance of Wetland Condition

eDNA testing reveals surprising findings on fish population dynamics in Thailand

COVID-19, a global health concern, has an effect on all aspects of the economy. The aquaculture and fishing industries were severely harmed as a result of the closures in multiple nations. Regular systems for inventory monitoring, production, and supply were disrupted. Cancellation of programmes for research, fieldwork, sampling, and tagging influences management-required data. For effective species management, fish dispersion assessments are indispensable. However, due to the difficulty of accessing sampling sites and the associated costs, there is frequently a lack of comprehensive information regarding the distribution and abundance of organisms. The COVID-19 prohibition made fish monitoring more problematic. Due to constant pressure, populations of the stone lapping minnow (Garra cambodgiensis), one of Thailand's overfished fish, are rapidly declining. Therefore, eDNA-based monitoring was devised and implemented to reveal the likely dispersal of the species in Thailand prior to and following the lockdown. At 28 locations within the Chao Phraya River Basin, water samples were collected. qPCR was used to determine the presence or absence of G. cambodgiensis in water samples. In 78 of 252 water samples, a wide range of computed copy numbers for G. cambodgiensis eDNA was observed. It was discovered that samples collected in 2021 (after the lockdown) contain a higher concentration of G. cambodgiensis eDNA than samples collected in 2018 or 2019 (prior to the lockdown). The closure appears to be a boon and may result in a substantial restocking of the fish we have studied. Overall, eDNA-based analysis is an extremely promising new survey instrument.

Bioaccumulation of pesticides and genotoxicity in anurans from southern Brazil

The expansion of agricultural activities causes habitat loss and fragmentation and the pollution of natural ecosystems through the intense use of pesticides, which may affect the populations of amphibian anurans that inhabit agricultural areas. The present study evaluated the in situ bioaccumulation of pesticides in a population of Leptodactylus luctator that occupies farmland in southern Brazil. We also compared the genotoxicity of L. luctator populations from farmland and forested areas in the same region. We analyzed the micronuclei and nuclear abnormalities of 34 adult anurans, 19 from farmland, and 15 from the forested area. We also assessed the presence of 32 pesticides in liver samples obtained from 18 farmland-dwelling anurans, using chromatographic analysis. We recorded significantly higher rates of nuclear abnormalities in the individuals from the farmland, in comparison with the forest. We detected nine pesticides in the liver samples, of which, deltamethrin was the most common and carbosulfan was recorded at the highest concentrations. The bioaccumulation of pesticides and the higher levels of genotoxic damage found in the anurans from agricultural areas, as observed in the present study, represent a major potential problem for the conservation of these vertebrates, including the decline of their populations and the extinction of species.

Water quality limitations for tadpoles of the Wood Frog in the northern Great Plains, Canada

Some wetlands in the northern Great Plains support hundreds to thousands of late-stage tadpoles providing important sources of recruitment to the Wood Frog (Lithobates sylvaticus) population while many other wetlands produce none. Relationships between water quality and late-stage tadpole abundance were determined to identify the water quality parameters associated with tadpole abundance. Water samples were collected, and late-stage tadpole abundances were assessed once each year in late June for 12 years in 26 wetlands. Catch or abundance was the number of tadpoles captured in 30 min with a dip-net. The catch of tadpoles was variable both among wetlands and over the long-term for individual wetlands, and ranged from 0 to several hundred individuals. Wood Frog tadpoles were especially sensitive to sodium and chloride concentrations. At Cl concentrations less than 5 mg/L, occupancy for late-stage tadpoles was 84%, and declined by about 8% for each 5 mg/L increase in Cl to 40.1 mg/L Cl, the maximum concentration associated with the detection of tadpoles. Optimal water quality for late-stage Wood Frog tadpoles included low concentrations of Na [Formula: see text] = 8.1 mg/L), and Cl [Formula: see text] = 4.2 mg/L) relative to total dissolved solids and other ions, and high concentrations of phosphorus. In a landscape where ion concentrations in wetlands can range over 3 orders of magnitude, water quality analyses suggest that abundant Wood Frog tadpole populations occur in wetlands dominated by snow-melt runoff with its characteristic low ion concentrations. The present study highlights the importance to amphibian conservation of the water quality environment of tadpole habitat.

Effects of landscape composition on wetland occupancy by Blanding’s Turtles (Emydoidea blandingii) as determined by environmental DNA and visual surveys

Habitat loss and degradation have led to the extinction of many species worldwide. The endangered Blanding’s Turtle (Emydoidea blandingii (Holbrook, 1838)), a semi-aquatic freshwater turtle, occupies a wide range of wetlands and landscapes primarily in southeastern Canada and the Great Lakes region of the United States. We explored whether the probability of wetland occupancy by Blanding’s Turtles is affected by the surrounding landscape. We used visual surveys, environmental DNA, and Atlas data to document the presence of Blanding’s Turtles in wetlands in Ottawa, Ontario, Canada. We tabulated landscape composition at multiple scales surrounding the wetlands to determine whether landscape composition can predict wetland occupancy. Generally, wetlands surrounded by forest and other undisturbed lands were most likely to harbour Blanding’s Turtles, whereas those surrounded by more human-disturbed lands were least likely to harbour Blanding’s Turtles. Larger wetlands and a high proportion of wetlands in the surrounding landscape also increased the probability of occupancy by Blanding’s Turtles. Finally, older wetlands were more likely to be occupied by Blanding’s Turtles. The ability to estimate a species’ probability of occupancy can aid in conservation efforts, such as critical habitat delineation.

Effects of Agricultural Stressors on Growth and an Immune Status Indicator in Wood Frog (Lithobates sylvaticus) Tadpoles and Metamorphs

Like many amphibians, wood frog (Lithobates sylvaticus) populations have likely declined or experienced local extirpations as a result of habitat alterations. Despite this, wood frogs are still present and breeding in altered landscapes, like the agricultural Prairie Pothole Region of central Canada, and are exposed to a variety of anthropogenic impacts. As tadpoles, water contamination can have negative effects on growth, development, and immune systems. To investigate the potential effects of agricultural land use on tadpole growth and immune system stress, we used boosted regression trees to model body mass, body condition, and neutrophil to lymphocyte ratios, a measure of immune stress, against 32 variables including water quality, wetland habitat, and landscape-level measures. Developmental stage strongly influenced all 3 endpoints, and body mass was negatively influenced by higher levels of total dissolved solids (>600-700 mg/L) and at the first sign of pesticide detection (>0.01 proportion pesticides detected of those screened). While correlative, these data suggest that tadpoles developing in agricultural environments may experience survival and reproductive disadvantages if they metamorphose at smaller body sizes. Given the potential impacts this can have on adult frogs and frog populations, these results provide an impetus for further field-based investigation into the effects that pesticides, and especially total dissolved solids, may have on tadpoles. Environ Toxicol Chem 2021;40:2269-2281. © 2021 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.