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Li J, Jin S, Li Z, Zeng X, Yang Y, Luo Z, Xu X, Cui Z, Liu Y, Wang J. Morphological Brain Networks of White Matter: Mapping, Evaluation, Characterization, and Application. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024:e2400061. [PMID: 39005232 DOI: 10.1002/advs.202400061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 06/27/2024] [Indexed: 07/16/2024]
Abstract
Although white matter (WM) accounts for nearly half of adult brain, its wiring diagram is largely unknown. Here, an approach is developed to construct WM networks by estimating interregional morphological similarity based on structural magnetic resonance imaging. It is found that morphological WM networks showed nontrivial topology, presented good-to-excellent test-retest reliability, accounted for phenotypic interindividual differences in cognition, and are under genetic control. Through integration with multimodal and multiscale data, it is further showed that morphological WM networks are able to predict the patterns of hamodynamic coherence, metabolic synchronization, gene co-expression, and chemoarchitectonic covariance, and associated with structural connectivity. Moreover, the prediction followed WM functional connectomic hierarchy for the hamodynamic coherence, is related to genes enriched in the forebrain neuron development and differentiation for the gene co-expression, and is associated with serotonergic system-related receptors and transporters for the chemoarchitectonic covariance. Finally, applying this approach to multiple sclerosis and neuromyelitis optica spectrum disorders, it is found that both diseases exhibited morphological dysconnectivity, which are correlated with clinical variables of patients and are able to diagnose and differentiate the diseases. Altogether, these findings indicate that morphological WM networks provide a reliable and biologically meaningful means to explore WM architecture in health and disease.
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Affiliation(s)
- Junle Li
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
| | - Suhui Jin
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
| | - Zhen Li
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
| | - Xiangli Zeng
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
| | - Yuping Yang
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
| | - Zhenzhen Luo
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
| | - Xiaoyu Xu
- State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, 100875, China
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Zaixu Cui
- Chinese Institute for Brain Research, Beijing, 102206, China
| | - Yaou Liu
- Department of Radiology, Beijing Tiantan Hospital, Beijing, 100070, China
| | - Jinhui Wang
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou, 510631, China
- Key Laboratory of Brain, Cognition and Education Sciences, Ministry of Education, Guangzhou, 510631, China
- Center for Studies of Psychological Application, South China Normal University, Guangzhou, 510631, China
- Guangdong Key Laboratory of Mental Health and Cognitive Science, South China Normal University, Guangzhou, 510631, China
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Wang J, He Y. Toward individualized connectomes of brain morphology. Trends Neurosci 2024; 47:106-119. [PMID: 38142204 DOI: 10.1016/j.tins.2023.11.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 11/16/2023] [Accepted: 11/30/2023] [Indexed: 12/25/2023]
Abstract
The morphological brain connectome (MBC) delineates the coordinated patterns of local morphological features (such as cortical thickness) across brain regions. While classically constructed using population-based approaches, there is a growing trend toward individualized modeling. Currently, the methods for individualized MBCs are varied, posing challenges for method selection and cross-study comparisons. Here, we summarize how individualized MBCs are modeled through low-order methods (correlation-, divergence-, distance-, and deviation-based methods) describing relations in brain morphology, as well as high-order methods capturing similarities in these low-order relations. We discuss the merits and limitations of different methods, examining them in the context of robustness, reproducibility, and reliability. We highlight the importance of elucidating the cellular and molecular mechanisms underlying the individualized connectome, and establishing normative benchmarks to assess individual variation in development, aging, and neuropsychiatric disorders.
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Affiliation(s)
- Jinhui Wang
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China; Guangdong Key Laboratory of Mental Health and Cognitive Science, South China Normal University, Guangzhou 510631, China; Center for Studies of Psychological Application, South China Normal University, Guangzhou 510631, China.
| | - Yong He
- IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, China; National Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing 100875, China; Beijing Key Laboratory of Brain Imaging and Connectomics, Beijing Normal University, Beijing 100875, China.
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Zareba MR, Fafrowicz M, Marek T, Oginska H, Beldzik E, Domagalik A. Tracing diurnal differences in brain anatomy with voxel-based morphometry - associations with sleep characteristics. Chronobiol Int 2024; 41:201-212. [PMID: 38192011 DOI: 10.1080/07420528.2024.2301944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 12/23/2023] [Indexed: 01/10/2024]
Abstract
Multiple aspects of brain functioning, including arousal, motivation, and cognitive performance, are governed by circadian rhythmicity. Although the recent rise in the use of magnetic resonance imaging (MRI) has enabled investigations into the macroscopic correlates of the diurnal brain processes, neuroanatomical studies are scarce. The current work investigated how time-of-day (TOD) impacts white (WM) and grey matter (GM) volumes using voxel-based morphometry (VBM) in a large dataset (N = 72) divided into two equal, comparable subsamples to assess the replicability of effects. Furthermore, we aimed to assess how the magnitude of these diurnal differences was related to actigraphy-derived indices of sleep health. The results extend the current knowledge by reporting that TOD is predominantly associated with regional WM volume decreases. Additionally, alongside corroborating previously observed volumetric GM decreases, we provide the first evidence for positive TOD effects. Higher replicability was observed for WM, with the only two replicated GM clusters being volumetric increases in the amygdala and hippocampus, and decreases in the retrosplenial cortex, with the latter more pronounced in individuals with shorter sleep times. These findings implicate the existence of region-specific mechanisms behind GM effects, which might be related to cognitive processes taking place during wakefulness and homeostatic sleep pressure.
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Affiliation(s)
- Michal Rafal Zareba
- Department of Basic and Clinical Psychology and Psychobiology, Jaume I University, Castellon de la Plana, Spain
- Centre for Brain Research, Jagiellonian University, Kraków, Poland
| | - Magdalena Fafrowicz
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Kraków, Poland
| | - Tadeusz Marek
- Faculty of Psychology, SWPS University, Katowice, Poland
| | - Halszka Oginska
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Kraków, Poland
| | - Ewa Beldzik
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Kraków, Poland
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Patel R, Provenzano D, Loew M. Anonymization and validation of three-dimensional volumetric renderings of computed tomography data using commercially available T1-weighted magnetic resonance imaging-based algorithms. J Med Imaging (Bellingham) 2023; 10:066501. [PMID: 38074629 PMCID: PMC10704182 DOI: 10.1117/1.jmi.10.6.066501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 11/03/2023] [Accepted: 11/07/2023] [Indexed: 02/12/2024] Open
Abstract
Purpose Previous studies have demonstrated that three-dimensional (3D) volumetric renderings of magnetic resonance imaging (MRI) brain data can be used to identify patients using facial recognition. We have shown that facial features can be identified on simulation-computed tomography (CT) images for radiation oncology and mapped to face images from a database. We aim to determine whether CT images can be anonymized using anonymization software that was designed for T1-weighted MRI data. Approach Our study examines (1) the ability of off-the-shelf anonymization algorithms to anonymize CT data and (2) the ability of facial recognition algorithms to identify whether faces could be detected from a database of facial images. Our study generated 3D renderings from 57 head CT scans from The Cancer Imaging Archive database. Data were anonymized using AFNI (deface, reface, and 3Dskullstrip) and FSL's BET. Anonymized data were compared to the original renderings and passed through facial recognition algorithms (VGG-Face, FaceNet, DLib, and SFace) using a facial database (labeled faces in the wild) to determine what matches could be found. Results Our study found that all modules were able to process CT data and that AFNI's 3Dskullstrip and FSL's BET data consistently showed lower reidentification rates compared to the original. Conclusions The results from this study highlight the potential usage of anonymization algorithms as a clinical standard for deidentifying brain CT data. Our study demonstrates the importance of continued vigilance for patient privacy in publicly shared datasets and the importance of continued evaluation of anonymization methods for CT data.
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Affiliation(s)
- Rahil Patel
- George Washington University School of Engineering and Applied Science, Department of Biomedical Engineering, Washington, District of Columbia, United States
| | - Destie Provenzano
- George Washington University School of Engineering and Applied Science, Department of Biomedical Engineering, Washington, District of Columbia, United States
| | - Murray Loew
- George Washington University School of Engineering and Applied Science, Department of Biomedical Engineering, Washington, District of Columbia, United States
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Yin G, Li T, Jin S, Wang N, Li J, Wu C, He H, Wang J. A comprehensive evaluation of multicentric reliability of single-subject cortical morphological networks on traveling subjects. Cereb Cortex 2023:7169131. [PMID: 37197789 DOI: 10.1093/cercor/bhad178] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Revised: 04/29/2023] [Accepted: 04/30/2023] [Indexed: 05/19/2023] Open
Abstract
Despite the prevalence of research on single-subject cerebral morphological networks in recent years, whether they can offer a reliable way for multicentric studies remains largely unknown. Using two multicentric datasets of traveling subjects, this work systematically examined the inter-site test-retest (TRT) reliabilities of single-subject cerebral morphological networks, and further evaluated the effects of several key factors. We found that most graph-based network measures exhibited fair to excellent reliabilities regardless of different analytical pipelines. Nevertheless, the reliabilities were affected by choices of morphological index (fractal dimension > sulcal depth > gyrification index > cortical thickness), brain parcellation (high-resolution > low-resolution), thresholding method (proportional > absolute), and network type (binarized > weighted). For the factor of similarity measure, its effects depended on the thresholding method used (absolute: Kullback-Leibler divergence > Jensen-Shannon divergence; proportional: Jensen-Shannon divergence > Kullback-Leibler divergence). Furthermore, longer data acquisition intervals and different scanner software versions significantly reduced the reliabilities. Finally, we showed that inter-site reliabilities were significantly lower than intra-site reliabilities for single-subject cerebral morphological networks. Altogether, our findings propose single-subject cerebral morphological networks as a promising approach for multicentric human connectome studies, and offer recommendations on how to determine analytical pipelines and scanning protocols for obtaining reliable results.
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Affiliation(s)
- Guole Yin
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China
| | - Ting Li
- Institute of Brain and Psychological Sciences, Sichuan Normal University, Chengdu 610066, China
| | - Suhui Jin
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China
| | - Ningkai Wang
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China
| | - Junle Li
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China
| | - Changwen Wu
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China
| | - Hongjian He
- Center for Brain Imaging Science and Technology, College of Biomedical Engineering and Instrumental Science, Zhejiang University, Hangzhou 310058, China
| | - Jinhui Wang
- Institute for Brain Research and Rehabilitation, South China Normal University, Guangzhou 510631, China
- Key Laboratory of Cognition and Education Sciences, Ministry of Education, Beijing 100816, China
- Center for Studies of Psychological Application, South China Normal University, Guangzhou 510000, China
- Guangdong Key Laboratory of Mental Health and Cognitive Science, South China Normal University, Guangzhou 510000, China
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