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Gu J, Wu W, Danovich D, Hoffmann R, Tsuji Y, Shaik S. Valence Bond Theory Reveals Hidden Delocalized Diradical Character of Polyenes. J Am Chem Soc 2017; 139:9302-9316. [DOI: 10.1021/jacs.7b04410] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Junjing Gu
- The
State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, Fujian Provincial Key Laboratory of Theoretical and
Computational Chemistry and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Wei Wu
- The
State Key Laboratory of Physical Chemistry of Solid Surfaces, iChEM, Fujian Provincial Key Laboratory of Theoretical and
Computational Chemistry and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - David Danovich
- Department
of Organic Chemistry and the Lise Meitner-Minerva Centre for Computational
Quantum Chemistry, The Hebrew University, Jerusalem 91904, Israel
| | - Roald Hoffmann
- Baker Laboratory, Department of Chemistry
and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
| | - Yuta Tsuji
- Education
Center for Global Leaders in Molecular Systems for Devices, Kyushu University, Nishi-ku, Fukuoka 819-0395, Japan
| | - Sason Shaik
- Department
of Organic Chemistry and the Lise Meitner-Minerva Centre for Computational
Quantum Chemistry, The Hebrew University, Jerusalem 91904, Israel
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Harcourt RD, Klapötke TM. Comment on "A quantitative definition of hypervalency" by M. C. Durrant, Chem. Sci., 2015, 6, 6614. Chem Sci 2016; 7:3443-3447. [PMID: 29999045 PMCID: PMC6007126 DOI: 10.1039/c5sc04866d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Accepted: 02/08/2016] [Indexed: 11/21/2022] Open
Abstract
Consideration is given to (electronically) hypervalent increased-valence structures, which possess 2c–1e bonds, fractional 2c–2e bonds, and usually normal 2c–2e bonds.
Consideration is given to (electronically) hypervalent increased-valence structures, which possess 2c–1e bonds, fractional 2c–2e bonds, and usually normal 2c–2e bonds. For singlet-spin electron-rich systems, increased-valence structures, with Heitler–London 2c–2e bond wavefunctions, are equivalent to resonance between non-hypervalent Kekulé and Dewar (or singlet diradical) type Lewis structures. Dewar structures are not considered in the Chem. Sci. 2015, 6, 6614 Edge article on hypervalency. Using one-electron delocalizations from lone-pair atomic orbitals into separate bonding molecular orbitals, increased-valence structures for PCl5, O3, SO42–, NO3–, N2O4 and SN2 reactions are derived from the Edge-article's Kekulé-type Lewis structures, and compared with the Edge article's hypervalent structures with 2c–2e bonds. It is also shown that Durrant's method to determine the γ parameter for XAY-type systems that possess a symmetrical 3c–4e bonding unit is related to the A-atom charge density.
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Affiliation(s)
- Richard D Harcourt
- School of Chemistry , The University of Melbourne , Victoria 3010 , Australia .
| | - Thomas M Klapötke
- Department of Chemistry , Ludwig-Maximilian University of Munich , Butenandstr. 5-13(D) , D-81377 Munich , Germany
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Sax AF. Localization of molecular orbitals on fragments. J Comput Chem 2012; 33:1495-510. [PMID: 22522607 DOI: 10.1002/jcc.22980] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2011] [Revised: 02/10/2012] [Accepted: 03/05/2012] [Indexed: 11/05/2022]
Abstract
A non-iterative algorithm for the localization of molecular orbitals (MOs) from complete active space self consistent field (CASSCF) and for single-determinantal wave functions on predefined moieties is given. The localized fragment orbitals can be used to analyze chemical reactions between fragments and also the binding of fragments in the product molecule with a fragments-in-molecules approach by using a valence bond expansion of the CASSCF wave function. The algorithm is an example of the orthogonal Procrustes problem, which is a matrix optimization problem using the singular value decomposition. It is based on the similarity of the set of MOs for the moieties to the localized MOs of the molecule; the similarity is expressed by overlap matrices between the original fragment MOs and the localized MOs. For CASSCF wave functions, localization is done independently in the space of occupied orbitals and active orbitals, whereas, the space of virtual orbitals is mostly uninteresting. Localization of Hartree-Fock or Kohn-Sham density functional theory orbitals is not straightforward; rather, it needs careful consideration, because in this case some virtual orbitals are needed but the space of virtual orbitals depends on the basis sets used and causes considerable problems due to the diffuse character of most virtual orbitals.
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Harcourt R. Comments on Valence Bond Structures for Molecules with 6-Electron 4-Center, 10-Electron 6-Center, and 8-Electron 6-Center Bonding Units. Z Anorg Allg Chem 2010. [DOI: 10.1002/zaac.201000110] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Shaik S. Valence bond all the way: From the degenerate H-exchange to cytochrome P450. Phys Chem Chem Phys 2010; 12:8706-20. [DOI: 10.1039/c001372m] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Papanikolaou P, Karafiloglou P. Extracting Covalent and Ionic Structures from Usual Delocalized Wave Functions: The Electron-Expansion Methodology. J Phys Chem A 2008; 112:8839-48. [DOI: 10.1021/jp8039725] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- P. Papanikolaou
- Department of General and Inorganic Chemistry, Faculty of Chemistry, POB 135, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
| | - P. Karafiloglou
- Department of General and Inorganic Chemistry, Faculty of Chemistry, POB 135, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece
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Shaik S. Is my chemical universe localized or delocalized? is there a future for chemical concepts? NEW J CHEM 2007. [DOI: 10.1039/b711641c] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Klapötke TM, Harcourt RD, Li J. Ab initio double-ζ (D95) valence bond calculations for the ground states of NO2, O3, and ClO2. Inorganica Chim Acta 2005. [DOI: 10.1016/j.ica.2004.12.018] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Toutchkine A, Aebisher D, Clennan EL. Substituent-dictated partitioning of intermediates on the sulfide singlet oxygen reaction surface. A new mechanism for oxidative C--S bond cleavage in alpha-hydroperoxy sulfides. J Am Chem Soc 2001; 123:4966-73. [PMID: 11457324 DOI: 10.1021/ja004188y] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The reactions of singlet oxygen with 17 sulfides bearing either anion or radical stabilizing substituents are reported. The abilities of substituents to modify product compositions in both the oxidative cleavage and sulfide oxidation pathways are analyzed in terms of partitioning of the hydroperoxy sulfonium ylide intermediate. Evidence is presented that suggests that the hydroperoxy sulfonium ylide exists in both diradical and zwitterionic forms. In addition, both inter- and intramolecular pathways for decomposition of alpha-hydroperoxy sulfides are suggested to rationalize the substituent-dependent formation of oxidative C--S bond cleavage products.
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Affiliation(s)
- A Toutchkine
- Department of Chemistry, University of Wyoming, Laramie, Wyoming 82071, USA
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Concerted vs stepwise mechanism in 1,3-dipolar cycloaddition of nitrone to ethene, cyclobutadiene, and benzocyclobutadiene. A computational study. J Org Chem 2000; 65:6112-20. [PMID: 10987947 DOI: 10.1021/jo000569i] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The problem of competition between concerted and stepwise diradical mechanisms in 1,3-dipolar cycloadditions was addressed by studying the reaction between nitrone and ethene with DFT (R(U)B3LYP/6-31G) and post HF methods. According to calculations this reaction should take place via the concerted cycloaddition path. The stepwise process is a viable but not competitive alternative. The R(U)B3LYP/6-31G study was extended to the reaction of the same 1, 3-dipole with cyclobutadiene and benzocyclobutadiene. The very reactive antiaromatic cyclobutadiene has an electronic structure that is particularly disposed to promote stepwise diradical pathways. Calculations suggest that its reaction with nitrone represents a borderline case in which the stepwise process can compete with the concerted one on similar footing. Attenuation of the antiaromatic character of the dipolarophile, i.e., on passing from cyclobutadiene to benzocyclobutadiene, causes the concerted 1,3-dipolar cycloaddition to become once again prevalent over the two-step path. Thus, our results suggest that, in 1,3-dipolar cycloadditions that involve normal dipolarophiles, the concerted path (Huisgen's mechanism) should clearly overwhelm its stepwise diradical (Firestone's mechanism) counterpart.
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Harcourt R. Increased-Valence Structures for Qualitative Valence-Bond Representations of Electronic Structure for Electron-Rich Molecules. Eur J Inorg Chem 2000. [DOI: 10.1002/1099-0682(200009)2000:9<1901::aid-ejic1901>3.0.co;2-n] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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OYAMA STED. Chemical and Catalytic Properties of Ozone. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2000. [DOI: 10.1081/cr-100100263] [Citation(s) in RCA: 246] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Bonesi SM, Mella M, d'Alessandro N, Aloisi GG, Vanossi M, Albini A. Photosensitized Oxygenation of Benzyl Ethyl Sulfide. J Org Chem 1998. [DOI: 10.1021/jo9817927] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Harcourt RD. Increased-valence structures and spin-coupled valence bond descriptions of 1,3-dipolar molecules. ACTA ACUST UNITED AC 1992. [DOI: 10.1016/0166-1280(92)87011-n] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Harcourt RD. Aspects of hypercoordination and one-electron delocalizations via increased-valence structures. ACTA ACUST UNITED AC 1991. [DOI: 10.1016/0166-1280(91)90137-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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An efficient calculation of the weights of non-orthogonal determinantal functions from the decomposition of MO wavefunctions. ACTA ACUST UNITED AC 1989. [DOI: 10.1016/0166-1280(89)85091-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Balcells M, Duran M, Lledós A, Bertrán J. Cycloaddition intermediates: Zwitterions or diradicals? ACTA ACUST UNITED AC 1987. [DOI: 10.1016/0166-1280(87)80056-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Ab initio valence bond calculations and the spin-paired diradical character of S 4 2+. ACTA ACUST UNITED AC 1985. [DOI: 10.1007/bf00529298] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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