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Ullah Z, Jamjoom M, Thirumalaisamy M, Alajmani SH, Saleem F, Sheikh-Akbari A, Khan UA. A Deep Learning Based Intelligent Decision Support System for Automatic Detection of Brain Tumor. Biomed Eng Comput Biol 2024; 15:11795972241277322. [PMID: 39238891 PMCID: PMC11375672 DOI: 10.1177/11795972241277322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 08/06/2024] [Indexed: 09/07/2024] Open
Abstract
Brain tumor (BT) is an awful disease and one of the foremost causes of death in human beings. BT develops mainly in 2 stages and varies by volume, form, and structure, and can be cured with special clinical procedures such as chemotherapy, radiotherapy, and surgical mediation. With revolutionary advancements in radiomics and research in medical imaging in the past few years, computer-aided diagnostic systems (CAD), especially deep learning, have played a key role in the automatic detection and diagnosing of various diseases and significantly provided accurate decision support systems for medical clinicians. Thus, convolution neural network (CNN) is a commonly utilized methodology developed for detecting various diseases from medical images because it is capable of extracting distinct features from an image under investigation. In this study, a deep learning approach is utilized to extricate distinct features from brain images in order to detect BT. Hence, CNN from scratch and transfer learning models (VGG-16, VGG-19, and LeNet-5) are developed and tested on brain images to build an intelligent decision support system for detecting BT. Since deep learning models require large volumes of data, data augmentation is used to populate the existing dataset synthetically in order to utilize the best fit detecting models. Hyperparameter tuning was conducted to set the optimum parameters for training the models. The achieved results show that VGG models outperformed others with an accuracy rate of 99.24%, average precision of 99%, average recall of 99%, average specificity of 99%, and average f1-score of 99% each. The results of the proposed models compared to the other state-of-the-art models in the literature show better performance of the proposed models in terms of accuracy, sensitivity, specificity, and f1-score. Moreover, comparative analysis shows that the proposed models are reliable in that they can be used for detecting BT as well as helping medical practitioners to diagnose BT.
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Affiliation(s)
- Zahid Ullah
- Information Systems Department, College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University, Riyadh, Saudi Arabia
| | - Mona Jamjoom
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | | | - Samah H Alajmani
- Department of Information Technology, College of Computers and Information Technology, Taif University, Taif, Saudi Arabia
| | - Farrukh Saleem
- School of Built Environment, Engineering, and Computing, Leeds Beckett University, Leeds, UK
| | - Akbar Sheikh-Akbari
- School of Built Environment, Engineering, and Computing, Leeds Beckett University, Leeds, UK
| | - Usman Ali Khan
- Department of Information Systems, Faculty of Computing and Information Technology, King Abdulaziz University, Jeddah, Saudi Arabia
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Pande SD, Ahammad SH, Madhav BTP, Ramya KR, Smirani LK, Hossain MA, Rashed ANZ. Assessment of brain tumor detection techniques and recommendation of neural network. BIOMED ENG-BIOMED TE 2024; 69:395-406. [PMID: 38285486 DOI: 10.1515/bmt-2022-0336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 01/05/2024] [Indexed: 01/30/2024]
Abstract
OBJECTIVES Brain tumor classification is amongst the most complex and challenging jobs in the computer domain. The latest advances in brain tumor detection systems (BTDS) are presented as they can inspire new researchers to deliver new architectures for effective and efficient tumor detection. Here, the data of the multi-modal brain tumor segmentation task is employed, which has been registered, skull stripped, and histogram matching is conducted with the ferrous volume of high contrast. METHODS This research further configures a capsule network (CapsNet) for brain tumor classification. Results of the latest deep neural network (NN) architectures for tumor detection are compared and presented. The VGG16 and CapsNet architectures yield the highest f1-score and precision values, followed by VGG19. Overall, ResNet152, MobileNet, and MobileNetV2 give us the lowest f1-score. RESULTS The VGG16 and CapsNet have produced outstanding results. However, VGG16 and VGG19 are more profound architecture, resulting in slower computation speed. The research then recommends the latest suitable NN for effective brain tumor detection. CONCLUSIONS Finally, the work concludes with future directions and potential new architectures for tumor detection.
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Affiliation(s)
| | - Shaik Hasane Ahammad
- Department of ECE, Koneru Lakshmaiah Education Foundation, Vaddeswaram, Andhra Pradesh, India
| | | | - Kalangi Ruth Ramya
- Department of Computer Engineering, Indira College of Engineering and Management, Pune, MH, India
| | - Lassaad K Smirani
- Deanship of Information Technology, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Md Amzad Hossain
- Department of Electrical and Electronic Engineering, Jashore University of Science and Technology, Jashore, Bangladesh
| | - Ahmed Nabih Zaki Rashed
- Electronics and Electrical Communications Engineering Department, Faculty of Electronic Engineering, Menoufia University, Menouf, Egypt
- Department of VLSI Microelectronics, Institute of Electronics and Communication Engineering, Saveetha School of Engineering, SIMATS, Chennai, Tamilnadu, India
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Elazab N, Gab Allah W, Elmogy M. Computer-aided diagnosis system for grading brain tumor using histopathology images based on color and texture features. BMC Med Imaging 2024; 24:177. [PMID: 39030508 PMCID: PMC11264763 DOI: 10.1186/s12880-024-01355-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 07/03/2024] [Indexed: 07/21/2024] Open
Abstract
BACKGROUND Cancer pathology shows disease development and associated molecular features. It provides extensive phenotypic information that is cancer-predictive and has potential implications for planning treatment. Based on the exceptional performance of computational approaches in the field of digital pathogenic, the use of rich phenotypic information in digital pathology images has enabled us to identify low-level gliomas (LGG) from high-grade gliomas (HGG). Because the differences between the textures are so slight, utilizing just one feature or a small number of features produces poor categorization results. METHODS In this work, multiple feature extraction methods that can extract distinct features from the texture of histopathology image data are used to compare the classification outcomes. The successful feature extraction algorithms GLCM, LBP, multi-LBGLCM, GLRLM, color moment features, and RSHD have been chosen in this paper. LBP and GLCM algorithms are combined to create LBGLCM. The LBGLCM feature extraction approach is extended in this study to multiple scales using an image pyramid, which is defined by sampling the image both in space and scale. The preprocessing stage is first used to enhance the contrast of the images and remove noise and illumination effects. The feature extraction stage is then carried out to extract several important features (texture and color) from histopathology images. Third, the feature fusion and reduction step is put into practice to decrease the number of features that are processed, reducing the computation time of the suggested system. The classification stage is created at the end to categorize various brain cancer grades. We performed our analysis on the 821 whole-slide pathology images from glioma patients in the Cancer Genome Atlas (TCGA) dataset. Two types of brain cancer are included in the dataset: GBM and LGG (grades II and III). 506 GBM images and 315 LGG images are included in our analysis, guaranteeing representation of various tumor grades and histopathological features. RESULTS The fusion of textural and color characteristics was validated in the glioma patients using the 10-fold cross-validation technique with an accuracy equals to 95.8%, sensitivity equals to 96.4%, DSC equals to 96.7%, and specificity equals to 97.1%. The combination of the color and texture characteristics produced significantly better accuracy, which supported their synergistic significance in the predictive model. The result indicates that the textural characteristics can be an objective, accurate, and comprehensive glioma prediction when paired with conventional imagery. CONCLUSION The results outperform current approaches for identifying LGG from HGG and provide competitive performance in classifying four categories of glioma in the literature. The proposed model can help stratify patients in clinical studies, choose patients for targeted therapy, and customize specific treatment schedules.
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Affiliation(s)
- Naira Elazab
- Information Technology Department, Faculty of Computers and Information, Mansoura University, 35516, Mansoura, Egypt
| | - Wael Gab Allah
- Information Technology Department, Faculty of Computers and Information, Mansoura University, 35516, Mansoura, Egypt
| | - Mohammed Elmogy
- Information Technology Department, Faculty of Computers and Information, Mansoura University, 35516, Mansoura, Egypt.
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Zhou L, Jiang Y, Li W, Hu J, Zheng S. Shape-Scale Co-Awareness Network for 3D Brain Tumor Segmentation. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:2495-2508. [PMID: 38386578 DOI: 10.1109/tmi.2024.3368531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/24/2024]
Abstract
The accurate segmentation of brain tumor is significant in clinical practice. Convolutional Neural Network (CNN)-based methods have made great progress in brain tumor segmentation due to powerful local modeling ability. However, brain tumors are frequently pattern-agnostic, i.e. variable in shape, size and location, which can not be effectively matched by traditional CNN-based methods with local and regular receptive fields. To address the above issues, we propose a shape-scale co-awareness network (S2CA-Net) for brain tumor segmentation, which can efficiently learn shape-aware and scale-aware features simultaneously to enhance pattern-agnostic representations. Primarily, three key components are proposed to accomplish the co-awareness of shape and scale. The Local-Global Scale Mixer (LGSM) decouples the extraction of local and global context by adopting the CNN-Former parallel structure, which contributes to obtaining finer hierarchical features. The Multi-level Context Aggregator (MCA) enriches the scale diversity of input patches by modeling global features across multiple receptive fields. The Multi-Scale Attentive Deformable Convolution (MS-ADC) learns the target deformation based on the multiscale inputs, which motivates the network to enforce feature constraints both in terms of scale and shape for optimal feature matching. Overall, LGSM and MCA focus on enhancing the scale-awareness of the network to cope with the size and location variations, while MS-ADC focuses on capturing deformation information for optimal shape matching. Finally, their effective integration prompts the network to perceive variations in shape and scale simultaneously, which can robustly tackle the variations in patterns of brain tumors. The experimental results on BraTS 2019, BraTS 2020, MSD BTS Task and BraTS2023-MEN show that S2CA-Net has superior overall performance in accuracy and efficiency compared to other state-of-the-art methods. Code: https://github.com/jiangyu945/S2CA-Net.
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Al-Otaibi S, Rehman A, Raza A, Alyami J, Saba T. CVG-Net: novel transfer learning based deep features for diagnosis of brain tumors using MRI scans. PeerJ Comput Sci 2024; 10:e2008. [PMID: 38855235 PMCID: PMC11157570 DOI: 10.7717/peerj-cs.2008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 04/01/2024] [Indexed: 06/11/2024]
Abstract
Brain tumors present a significant medical challenge, demanding accurate and timely diagnosis for effective treatment planning. These tumors disrupt normal brain functions in various ways, giving rise to a broad spectrum of physical, cognitive, and emotional challenges. The daily increase in mortality rates attributed to brain tumors underscores the urgency of this issue. In recent years, advanced medical imaging techniques, particularly magnetic resonance imaging (MRI), have emerged as indispensable tools for diagnosing brain tumors. Brain MRI scans provide high-resolution, non-invasive visualization of brain structures, facilitating the precise detection of abnormalities such as tumors. This study aims to propose an effective neural network approach for the timely diagnosis of brain tumors. Our experiments utilized a multi-class MRI image dataset comprising 21,672 images related to glioma tumors, meningioma tumors, and pituitary tumors. We introduced a novel neural network-based feature engineering approach, combining 2D convolutional neural network (2DCNN) and VGG16. The resulting 2DCNN-VGG16 network (CVG-Net) extracted spatial features from MRI images using 2DCNN and VGG16 without human intervention. The newly created hybrid feature set is then input into machine learning models to diagnose brain tumors. We have balanced the multi-class MRI image features data using the Synthetic Minority Over-sampling Technique (SMOTE) approach. Extensive research experiments demonstrate that utilizing the proposed CVG-Net, the k-neighbors classifier outperformed state-of-the-art studies with a k-fold accuracy performance score of 0.96. We also applied hyperparameter tuning to enhance performance for multi-class brain tumor diagnosis. Our novel proposed approach has the potential to revolutionize early brain tumor diagnosis, providing medical professionals with a cost-effective and timely diagnostic mechanism.
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Affiliation(s)
- Shaha Al-Otaibi
- Department of Information Systems, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Amjad Rehman
- Artificial Intelligence & Data Analytics Lab CCIS, Prince Sultan University, Riyadh, Saudi Arabia
| | - Ali Raza
- Institute of Computer Science, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Jaber Alyami
- Department of Diagnostic Radiology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Tanzila Saba
- Artificial Intelligence & Data Analytics Lab CCIS, Prince Sultan University, Riyadh, Saudi Arabia
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M MM, T R M, V VK, Guluwadi S. Enhancing brain tumor detection in MRI images through explainable AI using Grad-CAM with Resnet 50. BMC Med Imaging 2024; 24:107. [PMID: 38734629 PMCID: PMC11088067 DOI: 10.1186/s12880-024-01292-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2024] [Accepted: 05/06/2024] [Indexed: 05/13/2024] Open
Abstract
This study addresses the critical challenge of detecting brain tumors using MRI images, a pivotal task in medical diagnostics that demands high accuracy and interpretability. While deep learning has shown remarkable success in medical image analysis, there remains a substantial need for models that are not only accurate but also interpretable to healthcare professionals. The existing methodologies, predominantly deep learning-based, often act as black boxes, providing little insight into their decision-making process. This research introduces an integrated approach using ResNet50, a deep learning model, combined with Gradient-weighted Class Activation Mapping (Grad-CAM) to offer a transparent and explainable framework for brain tumor detection. We employed a dataset of MRI images, enhanced through data augmentation, to train and validate our model. The results demonstrate a significant improvement in model performance, with a testing accuracy of 98.52% and precision-recall metrics exceeding 98%, showcasing the model's effectiveness in distinguishing tumor presence. The application of Grad-CAM provides insightful visual explanations, illustrating the model's focus areas in making predictions. This fusion of high accuracy and explainability holds profound implications for medical diagnostics, offering a pathway towards more reliable and interpretable brain tumor detection tools.
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Affiliation(s)
| | - Mahesh T R
- Department of Computer Science and Engineering, JAIN (Deemed-to-be University), Bengaluru, 562112, India
| | - Vinoth Kumar V
- School of Computer Science Engineering and Information Systems, Vellore Institute of Technology University, Vellore, 632014, India
| | - Suresh Guluwadi
- Adama Science and Technology University, Adama, 302120, Ethiopia.
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Ullah MS, Khan MA, Almujally NA, Alhaisoni M, Akram T, Shabaz M. BrainNet: a fusion assisted novel optimal framework of residual blocks and stacked autoencoders for multimodal brain tumor classification. Sci Rep 2024; 14:5895. [PMID: 38467755 PMCID: PMC10928185 DOI: 10.1038/s41598-024-56657-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 03/08/2024] [Indexed: 03/13/2024] Open
Abstract
A significant issue in computer-aided diagnosis (CAD) for medical applications is brain tumor classification. Radiologists could reliably detect tumors using machine learning algorithms without extensive surgery. However, a few important challenges arise, such as (i) the selection of the most important deep learning architecture for classification (ii) an expert in the field who can assess the output of deep learning models. These difficulties motivate us to propose an efficient and accurate system based on deep learning and evolutionary optimization for the classification of four types of brain modalities (t1 tumor, t1ce tumor, t2 tumor, and flair tumor) on a large-scale MRI database. Thus, a CNN architecture is modified based on domain knowledge and connected with an evolutionary optimization algorithm to select hyperparameters. In parallel, a Stack Encoder-Decoder network is designed with ten convolutional layers. The features of both models are extracted and optimized using an improved version of Grey Wolf with updated criteria of the Jaya algorithm. The improved version speeds up the learning process and improves the accuracy. Finally, the selected features are fused using a novel parallel pooling approach that is classified using machine learning and neural networks. Two datasets, BraTS2020 and BraTS2021, have been employed for the experimental tasks and obtained an improved average accuracy of 98% and a maximum single-classifier accuracy of 99%. Comparison is also conducted with several classifiers, techniques, and neural nets; the proposed method achieved improved performance.
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Affiliation(s)
| | - Muhammad Attique Khan
- Department of Computer Science and Mathematics, Lebanese American University, Beirut, Lebanon
- Department of Computer Science, HITEC University, Taxila, 47080, Pakistan
| | - Nouf Abdullah Almujally
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, PO Box 84428, 11671, Riyadh, Saudi Arabia
| | - Majed Alhaisoni
- Computer Sciences Department, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Tallha Akram
- Department of ECE, COMSATS University Islamabad, Wah Campus, Rawalpindi, Pakistan
| | - Mohammad Shabaz
- Model Institute of Engineering and Technology, Jammu, J&K, India.
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Rahman A, Debnath T, Kundu D, Khan MSI, Aishi AA, Sazzad S, Sayduzzaman M, Band SS. Machine learning and deep learning-based approach in smart healthcare: Recent advances, applications, challenges and opportunities. AIMS Public Health 2024; 11:58-109. [PMID: 38617415 PMCID: PMC11007421 DOI: 10.3934/publichealth.2024004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Accepted: 12/18/2023] [Indexed: 04/16/2024] Open
Abstract
In recent years, machine learning (ML) and deep learning (DL) have been the leading approaches to solving various challenges, such as disease predictions, drug discovery, medical image analysis, etc., in intelligent healthcare applications. Further, given the current progress in the fields of ML and DL, there exists the promising potential for both to provide support in the realm of healthcare. This study offered an exhaustive survey on ML and DL for the healthcare system, concentrating on vital state of the art features, integration benefits, applications, prospects and future guidelines. To conduct the research, we found the most prominent journal and conference databases using distinct keywords to discover scholarly consequences. First, we furnished the most current along with cutting-edge progress in ML-DL-based analysis in smart healthcare in a compendious manner. Next, we integrated the advancement of various services for ML and DL, including ML-healthcare, DL-healthcare, and ML-DL-healthcare. We then offered ML and DL-based applications in the healthcare industry. Eventually, we emphasized the research disputes and recommendations for further studies based on our observations.
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Affiliation(s)
- Anichur Rahman
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
- Department of CSE, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Tanoy Debnath
- Department of CSE, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
- Department of CSE, Green University of Bangladesh, 220/D, Begum Rokeya Sarani, Dhaka -1207, Bangladesh
| | - Dipanjali Kundu
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
| | - Md. Saikat Islam Khan
- Department of CSE, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Airin Afroj Aishi
- Department of Computing and Information System, Daffodil International University, Savar, Dhaka, Bangladesh
| | - Sadia Sazzad
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
| | - Mohammad Sayduzzaman
- Department of CSE, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka-1350
| | - Shahab S. Band
- Department of Information Management, International Graduate School of Artificial Intelligence, National Yunlin University of Science and Technology, Taiwan
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Ranjbarzadeh R, Zarbakhsh P, Caputo A, Tirkolaee EB, Bendechache M. Brain tumor segmentation based on optimized convolutional neural network and improved chimp optimization algorithm. Comput Biol Med 2024; 168:107723. [PMID: 38000242 DOI: 10.1016/j.compbiomed.2023.107723] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 10/21/2023] [Accepted: 11/15/2023] [Indexed: 11/26/2023]
Abstract
Reliable and accurate brain tumor segmentation is a challenging task even with the appropriate acquisition of brain images. Tumor grading and segmentation utilizing Magnetic Resonance Imaging (MRI) are necessary steps for correct diagnosis and treatment planning. There are different MRI sequence images (T1, Flair, T1ce, T2, etc.) for identifying different parts of the tumor. Due to the diversity in the illumination of each brain imaging modality, different information and details can be obtained from each input modality. Therefore, by using various MRI modalities, the diagnosis system is capable of finding more unique details that lead to a better segmentation result, especially in fuzzy borders. In this study, to achieve an automatic and robust brain tumor segmentation framework using four MRI sequence images, an optimized Convolutional Neural Network (CNN) is proposed. All weight and bias values of the CNN model are adjusted using an Improved Chimp Optimization Algorithm (IChOA). In the first step, all four input images are normalized to find some potential areas of the existing tumor. Next, by employing the IChOA, the best features are selected using a Support Vector Machine (SVM) classifier. Finally, the best-extracted features are fed to the optimized CNN model to classify each object for brain tumor segmentation. Accordingly, the proposed IChOA is utilized for feature selection and optimizing Hyperparameters in the CNN model. The experimental outcomes conducted on the BRATS 2018 dataset demonstrate superior performance (Precision of 97.41 %, Recall of 95.78 %, and Dice Score of 97.04 %) compared to the existing frameworks.
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Affiliation(s)
- Ramin Ranjbarzadeh
- School of Computing, Faculty of Engineering and Computing, Dublin City University, Ireland.
| | - Payam Zarbakhsh
- Electrical and Electronic Engineering Department, Cyprus International University, Via Mersin 10, Nicosia, Northern Cyprus, Turkey.
| | - Annalina Caputo
- School of Computing, Faculty of Engineering and Computing, Dublin City University, Ireland.
| | - Erfan Babaee Tirkolaee
- Department of Industrial Engineering, Istinye University, Istanbul, Turkey; Department of Industrial Engineering and Management, Yuan Ze University, Taoyuan, Taiwan; Department of Industrial and Mechanical Engineering, Lebanese American University, Byblos, Lebanon.
| | - Malika Bendechache
- Lero & ADAPT Research Centres, School of Computer Science, University of Galway, Ireland.
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10
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Rasa SM, Islam MM, Talukder MA, Uddin MA, Khalid M, Kazi M, Kazi MZ. Brain tumor classification using fine-tuned transfer learning models on magnetic resonance imaging (MRI) images. Digit Health 2024; 10:20552076241286140. [PMID: 39381813 PMCID: PMC11459499 DOI: 10.1177/20552076241286140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Accepted: 08/30/2024] [Indexed: 10/10/2024] Open
Abstract
Objective Brain tumors are a leading global cause of mortality, often leading to reduced life expectancy and challenging recovery. Early detection significantly improves survival rates. This paper introduces an efficient deep learning model to expedite brain tumor detection through timely and accurate identification using magnetic resonance imaging images. Methods Our approach leverages deep transfer learning with six transfer learning algorithms: VGG16, ResNet50, MobileNetV2, DenseNet201, EfficientNetB3, and InceptionV3. We optimize data preprocessing, upsample data through augmentation, and train the models using two optimizers: Adam and AdaMax. We perform three experiments with binary and multi-class datasets, fine-tuning parameters to reduce overfitting. Model effectiveness is analyzed using various performance scores with and without cross-validation. Results With smaller datasets, the models achieve 100% accuracy in both training and testing without cross-validation. After applying cross-validation, the framework records an outstanding accuracy of 99.96% with a receiver operating characteristic of 100% on average across five tests. For larger datasets, accuracy ranges from 96.34% to 98.20% across different models. The methodology also demonstrates a small computation time, contributing to its reliability and speed. Conclusion The study establishes a new standard for brain tumor classification, surpassing existing methods in accuracy and efficiency. Our deep learning approach, incorporating advanced transfer learning algorithms and optimized data processing, provides a robust and rapid solution for brain tumor detection.
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Affiliation(s)
- Sadia Maduri Rasa
- Department of Computer Science and Engineering, Jagannath University, Dhaka, Bangladesh
| | | | - Mohammed Alamin Talukder
- Department of Computer Science and Engineering, International University of Business Agriculture and Technology, Dhaka, Bangladesh
| | | | - Majdi Khalid
- Department of Computer Science and Artificial Intelligence,
College of Computing, Umm Al-Qura University, Makkah,
Saudi Arabia
| | - Mohsin Kazi
- Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Mohammed Zobayer Kazi
- Department of Computer Science and Engineering, Jagannath University, Dhaka, Bangladesh
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11
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Raghavendra U, Gudigar A, Paul A, Goutham TS, Inamdar MA, Hegde A, Devi A, Ooi CP, Deo RC, Barua PD, Molinari F, Ciaccio EJ, Acharya UR. Brain tumor detection and screening using artificial intelligence techniques: Current trends and future perspectives. Comput Biol Med 2023; 163:107063. [PMID: 37329621 DOI: 10.1016/j.compbiomed.2023.107063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 05/16/2023] [Accepted: 05/19/2023] [Indexed: 06/19/2023]
Abstract
A brain tumor is an abnormal mass of tissue located inside the skull. In addition to putting pressure on the healthy parts of the brain, it can lead to significant health problems. Depending on the region of the brain tumor, it can cause a wide range of health issues. As malignant brain tumors grow rapidly, the mortality rate of individuals with this cancer can increase substantially with each passing week. Hence it is vital to detect these tumors early so that preventive measures can be taken at the initial stages. Computer-aided diagnostic (CAD) systems, in coordination with artificial intelligence (AI) techniques, have a vital role in the early detection of this disorder. In this review, we studied 124 research articles published from 2000 to 2022. Here, the challenges faced by CAD systems based on different modalities are highlighted along with the current requirements of this domain and future prospects in this area of research.
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Affiliation(s)
- U Raghavendra
- Department of Instrumentation and Control Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India
| | - Anjan Gudigar
- Department of Instrumentation and Control Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India.
| | - Aritra Paul
- Department of Instrumentation and Control Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India
| | - T S Goutham
- Department of Instrumentation and Control Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India
| | - Mahesh Anil Inamdar
- Department of Mechatronics, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, 576104, India
| | - Ajay Hegde
- Consultant Neurosurgeon Manipal Hospitals, Sarjapur Road, Bangalore, India
| | - Aruna Devi
- School of Education and Tertiary Access, University of the Sunshine Coast, Caboolture Campus, Australia
| | - Chui Ping Ooi
- School of Science and Technology, Singapore University of Social Sciences, Singapore, 599494, Singapore
| | - Ravinesh C Deo
- School of Mathematics, Physics, and Computing, University of Southern Queensland, Springfield, QLD, 4300, Australia
| | - Prabal Datta Barua
- Cogninet Brain Team, Cogninet Australia, Sydney, NSW, 2010, Australia; School of Business (Information Systems), Faculty of Business, Education, Law & Arts, University of Southern Queensland, Toowoomba, QLD, 4350, Australia; Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - Filippo Molinari
- Department of Electronics and Telecommunications, Politecnico di Torino, 10129, Torino, Italy
| | - Edward J Ciaccio
- Department of Medicine, Columbia University Medical Center, New York, NY, 10032, USA
| | - U Rajendra Acharya
- School of Mathematics, Physics, and Computing, University of Southern Queensland, Springfield, QLD, 4300, Australia; International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto, 860-8555, Japan
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12
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Khan F, Ayoub S, Gulzar Y, Majid M, Reegu FA, Mir MS, Soomro AB, Elwasila O. MRI-Based Effective Ensemble Frameworks for Predicting Human Brain Tumor. J Imaging 2023; 9:163. [PMID: 37623695 PMCID: PMC10455878 DOI: 10.3390/jimaging9080163] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 08/12/2023] [Accepted: 08/15/2023] [Indexed: 08/26/2023] Open
Abstract
The diagnosis of brain tumors at an early stage is an exigent task for radiologists. Untreated patients rarely survive more than six months. It is a potential cause of mortality that can occur very quickly. Because of this, the early and effective diagnosis of brain tumors requires the use of an automated method. This study aims at the early detection of brain tumors using brain magnetic resonance imaging (MRI) data and efficient learning paradigms. In visual feature extraction, convolutional neural networks (CNN) have achieved significant breakthroughs. The study involves features extraction by deep convolutional layers for the efficient classification of brain tumor victims from the normal group. The deep convolutional neural network was implemented to extract features that represent the image more comprehensively for model training. Using deep convolutional features helps to increase the precision of tumor and non-tumor patient classifications. In this paper, we experimented with five machine learnings (ML) to heighten the understanding and enhance the scope and significance of brain tumor classification. Further, we proposed an ensemble of three high-performing individual ML models, namely Extreme Gradient Boosting, Ada-Boost, and Random Forest (XG-Ada-RF), to derive binary class classification output for detecting brain tumors in images. The proposed voting classifier, along with convoluted features, produced results that showed the highest accuracy of 95.9% for tumor and 94.9% for normal. Compared to individual methods, the proposed ensemble approach demonstrated improved accuracy and outperformed the individual methods.
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Affiliation(s)
- Farhana Khan
- Glocal School of Science and Technology, Glocal University, Delhi-Yamunotri Marg (State Highway 57), Mirzapur Pole 247121, India
| | - Shahnawaz Ayoub
- Glocal School of Science and Technology, Glocal University, Delhi-Yamunotri Marg (State Highway 57), Mirzapur Pole 247121, India
| | - Yonis Gulzar
- Department of Management Information Systems, College of Business Administration, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Muneer Majid
- Glocal School of Science and Technology, Glocal University, Delhi-Yamunotri Marg (State Highway 57), Mirzapur Pole 247121, India
| | - Faheem Ahmad Reegu
- College of Computer Science and Information Technology, Jazan University, Jazan 45142, Saudi Arabia
| | - Mohammad Shuaib Mir
- Department of Management Information Systems, College of Business Administration, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Arjumand Bano Soomro
- Department of Management Information Systems, College of Business Administration, King Faisal University, Al-Ahsa 31982, Saudi Arabia
- Department of Software Engineering, Faculty of Engineering and Technology, University of Sindh, Jamshoro 76080, Pakistan
| | - Osman Elwasila
- Department of Management Information Systems, College of Business Administration, King Faisal University, Al-Ahsa 31982, Saudi Arabia
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13
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Alamgeer M, Alruwais N, Alshahrani HM, Mohamed A, Assiri M. Dung Beetle Optimization with Deep Feature Fusion Model for Lung Cancer Detection and Classification. Cancers (Basel) 2023; 15:3982. [PMID: 37568800 PMCID: PMC10417684 DOI: 10.3390/cancers15153982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 07/27/2023] [Accepted: 07/31/2023] [Indexed: 08/13/2023] Open
Abstract
Lung cancer is the main cause of cancer deaths all over the world. An important reason for these deaths was late analysis and worse prediction. With the accelerated improvement of deep learning (DL) approaches, DL can be effectively and widely executed for several real-world applications in healthcare systems, like medical image interpretation and disease analysis. Medical imaging devices can be vital in primary-stage lung tumor analysis and the observation of lung tumors from the treatment. Many medical imaging modalities like computed tomography (CT), chest X-ray (CXR), molecular imaging, magnetic resonance imaging (MRI), and positron emission tomography (PET) systems are widely analyzed for lung cancer detection. This article presents a new dung beetle optimization modified deep feature fusion model for lung cancer detection and classification (DBOMDFF-LCC) technique. The presented DBOMDFF-LCC technique mainly depends upon the feature fusion and hyperparameter tuning process. To accomplish this, the DBOMDFF-LCC technique uses a feature fusion process comprising three DL models, namely residual network (ResNet), densely connected network (DenseNet), and Inception-ResNet-v2. Furthermore, the DBO approach was employed for the optimum hyperparameter selection of three DL approaches. For lung cancer detection purposes, the DBOMDFF-LCC system utilizes a long short-term memory (LSTM) approach. The simulation result analysis of the DBOMDFF-LCC technique of the medical dataset is investigated using different evaluation metrics. The extensive comparative results highlighted the betterment of the DBOMDFF-LCC technique of lung cancer classification.
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Affiliation(s)
- Mohammad Alamgeer
- Department of Information Systems, College of Science & Art at Mahayil, King Khalid University, Abha 61421, Saudi Arabia
| | - Nuha Alruwais
- Department of Computer Science and Engineering, College of Applied Studies and Community Services, King Saud University, P.O. Box 22459, Riyadh 11495, Saudi Arabia;
| | - Haya Mesfer Alshahrani
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia;
| | - Abdullah Mohamed
- Research Centre, Future University in Egypt, New Cairo 11845, Egypt;
| | - Mohammed Assiri
- Department of Computer Science, College of Sciences and Humanities-Aflaj, Prince Sattam bin Abdulaziz University, Aflaj 16273, Saudi Arabia;
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14
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Darwish SM, Abu Shaheen LJ, Elzoghabi AA. A New Medical Analytical Framework for Automated Detection of MRI Brain Tumor Using Evolutionary Quantum Inspired Level Set Technique. Bioengineering (Basel) 2023; 10:819. [PMID: 37508846 PMCID: PMC10376225 DOI: 10.3390/bioengineering10070819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 06/29/2023] [Accepted: 07/04/2023] [Indexed: 07/30/2023] Open
Abstract
Segmenting brain tumors in 3D magnetic resonance imaging (3D-MRI) accurately is critical for easing the diagnostic and treatment processes. In the field of energy functional theory-based methods for image segmentation and analysis, level set methods have emerged as a potent computational approach that has greatly aided in the advancement of the geometric active contour model. An important factor in reducing segmentation error and the number of required iterations when using the level set technique is the choice of the initial contour points, both of which are important when dealing with the wide range of sizes, shapes, and structures that brain tumors may take. To define the velocity function, conventional methods simply use the image gradient, edge strength, and region intensity. This article suggests a clustering method influenced by the Quantum Inspired Dragonfly Algorithm (QDA), a metaheuristic optimizer inspired by the swarming behaviors of dragonflies, to accurately extract initial contour points. The proposed model employs a quantum-inspired computing paradigm to stabilize the trade-off between exploitation and exploration, thereby compensating for any shortcomings of the conventional DA-based clustering method, such as slow convergence or falling into a local optimum. To begin, the quantum rotation gate concept can be used to relocate a colony of agents to a location where they can better achieve the optimum value. The main technique is then given a robust local search capacity by adopting a mutation procedure to enhance the swarm's mutation and realize its variety. After a preliminary phase in which the cranium is disembodied from the brain, tumor contours (edges) are determined with the help of QDA. An initial contour for the MRI series will be derived from these extracted edges. The final step is to use a level set segmentation technique to isolate the tumor area across all volume segments. When applied to 3D-MRI images from the BraTS' 2019 dataset, the proposed technique outperformed state-of-the-art approaches to brain tumor segmentation, as shown by the obtained results.
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Affiliation(s)
- Saad M Darwish
- Department of Information Technology, Institute of Graduate Studies and Research, Alexandria University, 163 Horreya Avenue, El Shatby, Alexandria 21526, Egypt
| | - Lina J Abu Shaheen
- Department of Computer Information Systems, College of Technology and Applied Sciences, Al-Quds Open University, Deir AL Balah P920, Palestine
| | - Adel A Elzoghabi
- Department of Information Technology, Institute of Graduate Studies and Research, Alexandria University, 163 Horreya Avenue, El Shatby, Alexandria 21526, Egypt
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15
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Mukherjee T, Pournik O, Lim Choi Keung SN, Arvanitis TN. Clinical Decision Support Systems for Brain Tumour Diagnosis and Prognosis: A Systematic Review. Cancers (Basel) 2023; 15:3523. [PMID: 37444633 DOI: 10.3390/cancers15133523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/02/2023] [Accepted: 07/03/2023] [Indexed: 07/15/2023] Open
Abstract
CDSSs are being continuously developed and integrated into routine clinical practice as they assist clinicians and radiologists in dealing with an enormous amount of medical data, reduce clinical errors, and improve diagnostic capabilities. They assist detection, classification, and grading of brain tumours as well as alert physicians of treatment change plans. The aim of this systematic review is to identify various CDSSs that are used in brain tumour diagnosis and prognosis and rely on data captured by any imaging modality. Based on the 2020 preferred reporting items for systematic reviews and meta-analyses (PRISMA) protocol, the literature search was conducted in PubMed and Engineering Village Compendex databases. Different types of CDSSs identified through this review include Curiam BT, FASMA, MIROR, HealthAgents, and INTERPRET, among others. This review also examines various CDSS tool types, system features, techniques, accuracy, and outcomes, to provide the latest evidence available in the field of neuro-oncology. An overview of such CDSSs used to support clinical decision-making in the management and treatment of brain tumours, along with their benefits, challenges, and future perspectives has been provided. Although a CDSS improves diagnostic capabilities and healthcare delivery, there is lack of specific evidence to support these claims. The absence of empirical data slows down both user acceptance and evaluation of the actual impact of CDSS on brain tumour management. Instead of emphasizing the advantages of implementing CDSS, it is important to address its potential drawbacks and ethical implications. By doing so, it can promote the responsible use of CDSS and facilitate its faster adoption in clinical settings.
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Affiliation(s)
- Teesta Mukherjee
- Department of Electronic, Electrical and Systems Engineering, School of Engineering, College of Engineering and Physical Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Omid Pournik
- Department of Electronic, Electrical and Systems Engineering, School of Engineering, College of Engineering and Physical Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Sarah N Lim Choi Keung
- Department of Electronic, Electrical and Systems Engineering, School of Engineering, College of Engineering and Physical Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
| | - Theodoros N Arvanitis
- Department of Electronic, Electrical and Systems Engineering, School of Engineering, College of Engineering and Physical Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
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Khan MA, Akram T, Zhang Y, Alhaisoni M, Al Hejaili A, Shaban KA, Tariq U, Zayyan MH. SkinNet‐ENDO: Multiclass skin lesion recognition using deep neural network and Entropy‐Normal distribution optimization algorithm with ELM. INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY 2023; 33:1275-1292. [DOI: 10.1002/ima.22863] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 01/31/2023] [Indexed: 08/25/2024]
Abstract
AbstractThe early diagnosis of skin cancer through clinical methods reduces the human mortality rate. The manual screening of dermoscopic images is not an efficient procedure; therefore, researchers working in the domain of computer vision employed several algorithms to classify the skin lesion. The existing computerized methods have a few drawbacks, such as low accuracy and high computational time. Therefore, in this work, we proposed a novel deep learning and Entropy‐Normal Distribution Optimization Algorithm with extreme learning machine (NDOEM)‐based architecture for multiclass skin lesion classification. The proposed architecture consists of five fundamental steps. In the first step, two contrast enhancement techniques including hybridization of mathematical formulation and convolutional neural network are implemented prior to data augmentation. In the second step, two pre‐trained deep learning models, EfficientNetB0 and DarkNet19, are fine‐tuned and retrained through the transfer learning. In the third step, features are extracted from the fine‐tuned models and later the most discriminant features are selected based on novel Entropy‐NDOELM algorithm. The selected features are finally fused using a parallel correlation technique in the fourth step to generate the result feature vectors. Finally, the resultant features are again down‐sampled using the proposed algorithm and the resultant features are passed to the extreme learning machine (ELM) for the final classification. The simulations are conducted on three publicly available datasets as HAM10000, ISIC2018, and ISIC2019 to achieving an accuracy of 95.7%, 96.3%, and 94.8% respectively.
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Affiliation(s)
- Muhammad Attique Khan
- Department of Computer Science HITEC University Taxila Pakistan
- Department of Informatics University of Leicester Leicester UK
| | - Tallha Akram
- Department of Electrical and Computer Engineering COMSATS University Islamabad Wah Campus Pakistan
| | - Yu‐Dong Zhang
- Department of Informatics University of Leicester Leicester UK
| | - Majed Alhaisoni
- Computer Sciences Department, College of Computer and Information Sciences Princess Nourah bint Abdulrahman University Riyadh Saudi Arabia
| | - Abdullah Al Hejaili
- Faculty of Computers & Information Technology, Computer Science Department University of Tabuk Tabuk Saudi Arabia
| | - Khalid Adel Shaban
- Computer Science Department, College of Computing and Informatics Saudi Electronic University Ryiadh Saudi Arabia
| | - Usman Tariq
- Department of Management Information Systems College of Business Administration, Prince Sattam Bin Abdulaziz University Al‐Kharj Saudi Arabia
| | - Muhammad H. Zayyan
- Computer Science Department, Faculty of Computers and Information Sciences Mansoura University Mansoura Egypt
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17
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Hussain S, Haider S, Maqsood S, Damaševičius R, Maskeliūnas R, Khan M. ETISTP: An Enhanced Model for Brain Tumor Identification and Survival Time Prediction. Diagnostics (Basel) 2023; 13:diagnostics13081456. [PMID: 37189556 DOI: 10.3390/diagnostics13081456] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 03/30/2023] [Accepted: 04/14/2023] [Indexed: 05/17/2023] Open
Abstract
Technology-assisted diagnosis is increasingly important in healthcare systems. Brain tumors are a leading cause of death worldwide, and treatment plans rely heavily on accurate survival predictions. Gliomas, a type of brain tumor, have particularly high mortality rates and can be further classified as low- or high-grade, making survival prediction challenging. Existing literature provides several survival prediction models that use different parameters, such as patient age, gross total resection status, tumor size, or tumor grade. However, accuracy is often lacking in these models. The use of tumor volume instead of size may improve the accuracy of survival prediction. In response to this need, we propose a novel model, the enhanced brain tumor identification and survival time prediction (ETISTP), which computes tumor volume, classifies it into low- or high-grade glioma, and predicts survival time with greater accuracy. The ETISTP model integrates four parameters: patient age, survival days, gross total resection (GTR) status, and tumor volume. Notably, ETISTP is the first model to employ tumor volume for prediction. Furthermore, our model minimizes the computation time by allowing for parallel execution of tumor volume computation and classification. The simulation results demonstrate that ETISTP outperforms prominent survival prediction models.
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Affiliation(s)
- Shah Hussain
- Department of Computer Science, City University of Science and Information Technology, Peshawar 25000, Pakistan
| | - Shahab Haider
- Department of Computer Science, City University of Science and Information Technology, Peshawar 25000, Pakistan
| | - Sarmad Maqsood
- Faculty of Informatics, Kaunas University of Technology, 51368 Kaunas, Lithuania
| | - Robertas Damaševičius
- Department of Applied Informatics, Vytautas Magnus University, 44404 Kaunas, Lithuania
| | - Rytis Maskeliūnas
- Faculty of Informatics, Kaunas University of Technology, 51368 Kaunas, Lithuania
- Faculty of Applied Mathematics, Silesian University of Technology, 44-100 Gliwice, Poland
| | - Muzammil Khan
- Department of Computer & Software Technology, University of Swat, Swat 19200, Pakistan
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