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Deciphering the transcriptional-regulatory network of flocculation in Schizosaccharomyces pombe. PLoS Genet 2012; 8:e1003104. [PMID: 23236291 PMCID: PMC3516552 DOI: 10.1371/journal.pgen.1003104] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2012] [Accepted: 10/03/2012] [Indexed: 01/07/2023] Open
Abstract
In the fission yeast Schizosaccharomyces pombe, the transcriptional-regulatory network that governs flocculation remains poorly understood. Here, we systematically screened an array of transcription factor deletion and overexpression strains for flocculation and performed microarray expression profiling and ChIP-chip analysis to identify the flocculin target genes. We identified five transcription factors that displayed novel roles in the activation or inhibition of flocculation (Rfl1, Adn2, Adn3, Sre2, and Yox1), in addition to the previously-known Mbx2, Cbf11, and Cbf12 regulators. Overexpression of mbx2(+) and deletion of rfl1(+) resulted in strong flocculation and transcriptional upregulation of gsf2(+)/pfl1(+) and several other putative flocculin genes (pfl2(+)-pfl9(+)). Overexpression of the pfl(+) genes singly was sufficient to trigger flocculation, and enhanced flocculation was observed in several combinations of double pfl(+) overexpression. Among the pfl1(+) genes, only loss of gsf2(+) abrogated the flocculent phenotype of all the transcription factor mutants and prevented flocculation when cells were grown in inducing medium containing glycerol and ethanol as the carbon source, thereby indicating that Gsf2 is the dominant flocculin. In contrast, the mild flocculation of adn2(+) or adn3(+) overexpression was likely mediated by the transcriptional activation of cell wall-remodeling genes including gas2(+), psu1(+), and SPAC4H3.03c. We also discovered that Mbx2 and Cbf12 displayed transcriptional autoregulation, and Rfl1 repressed gsf2(+) expression in an inhibitory feed-forward loop involving mbx2(+). These results reveal that flocculation in S. pombe is regulated by a complex network of multiple transcription factors and target genes encoding flocculins and cell wall-remodeling enzymes. Moreover, comparisons between the flocculation transcriptional-regulatory networks of Saccharomyces cerevisiae and S. pombe indicate substantial rewiring of transcription factors and cis-regulatory sequences.
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Leeuw NJ, Swart CW, Ncango DM, Kriel WM, Pohl CH, van Wyk PW, Kock JL. Anti-inflammatory drugs selectively target sporangium development in Mucor. Can J Microbiol 2009; 55:1392-6. [DOI: 10.1139/w09-096] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
It is known that acetylsalicylic acid, an anti-inflammatory and anti-mitochondrial drug, targets structure development and functions of yeasts depending on elevated levels of mitochondrial activity. Using antibody probes, we previously reported that sporangia of Mucor circinelloides also contain increased mitochondrial activity, yielding high levels of 3-hydroxyoxylipins. This was, however, not found in Mortierella alpina (subgenus Mortierella ). In this study we report that acetylsalicylic acid (aspirin) also targets sporangium development of Mucor circinelloides selectively, while hyphae with lower levels of mitochondrial activity are more resistant. Similar results were obtained when the anti-inflammatory compounds benzoic acid, ibuprofen, indomethacin, and salicylic acid were tested. The anti-inflammatory drugs exerted similar effects on this dimorphic fungus as found under oxygen-limited conditions. Interestingly, sporangium development of Mortierella alpina was found not to be selectively targeted by these drugs. Mortierella alpina, which could not exhibit dimorphic growth under oxygen-limited conditions, was also more sensitive to the anti-inflammatory drugs when compared with Mucor circinelloides. These results prompt further research to assess the applicability of these antimitochondrial antifungals to protect plants and animals against Mucor infections.
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Affiliation(s)
- Ntsoaki J. Leeuw
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
| | - Chantel W. Swart
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
| | - Desmond M. Ncango
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
| | - Wilmarie M. Kriel
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
| | - Carolina H. Pohl
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
| | - Pieter W.J. van Wyk
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
| | - Johan L.F. Kock
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
- Centre for Microscopy, University of the Free State, P.O. Box 339, Bloemfontein 9301, South Africa
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Lodolo EJ, Kock JLF, Axcell BC, Brooks M. The yeast Saccharomyces cerevisiae- the main character in beer brewing. FEMS Yeast Res 2008; 8:1018-36. [PMID: 18795959 DOI: 10.1111/j.1567-1364.2008.00433.x] [Citation(s) in RCA: 145] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Historically, mankind and yeast developed a relationship that led to the discovery of fermented beverages. Numerous inventions have led to improved technologies and capabilities to optimize fermentation technology on an industrial scale. The role of brewing yeast in the beer-making process is reviewed and its importance as the main character is highlighted. On considering the various outcomes of functions in a brewery, it has been found that these functions are focused on supporting the supply of yeast requirements for fermentation and ultimately to maintain the integrity of the product. The functions/processes include: nutrient supply to the yeast (raw material supply for brewhouse wort production); utilities (supply of water, heat and cooling); quality assurance practices (hygiene practices, microbiological integrity measures and other specifications); plant automation (vessels, pipes, pumps, valves, sensors, stirrers and centrifuges); filtration and packaging (product preservation until consumption); distribution (consumer supply); and marketing (consumer awareness). Considering this value chain of beer production and the 'bottle neck' during production, the spotlight falls on fermentation, the age-old process where yeast transforms wort into beer.
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Sebolai OM, Pohl CH, Botes PJ, van Wyk PW, Mzizi R, Swart CW, Kock JL. Distribution of 3-hydroxy oxylipins and acetylsalicylic acid sensitivity in Cryptococcus species. Can J Microbiol 2008; 54:111-8. [DOI: 10.1139/w07-116] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Using a well tested antibody specific for 3-hydroxy oxylipins, we mapped the presence of these oxylipins in selected Cryptococcus ( Filobasidiella ) species. Immunofluorescence microscopy studies revealed that these compounds are deposited on cell wall surfaces, appendages, and collarettes. In vitro studies revealed that growth of Cryptococcus species was inhibited by acetylsalicylic acid (which is known to inhibit mitochondrial function, including the production of 3-hydroxy oxylipins) at concentrations as low as 1 mmol/L. The results suggest that acetylsalicylic acid is effective in controlling the growth of tested pathogens, probably by targeting their mitochondria. This study further expands the known function of this anti-inflammatory drug as anti-fungal agent.
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Affiliation(s)
- Olihile M. Sebolai
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
| | - Carolina H. Pohl
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
| | - Piet J. Botes
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
| | - Pieter W.J. van Wyk
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
| | - Refilwe Mzizi
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
| | - Chantel W. Swart
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
| | - Johan L.F. Kock
- Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
- Centre for Confocal and Electron Microscopy, University of the Free State, Nelson Mandela Drive, P.O. Box 339, Bloemfontein, Free State 9301, South Africa
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