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Cui X, Liu T, Xu X, Zhao Z, Tian Y, Zhao Y, Chen S, Wang Z, Wang Y, Hu D, Fu S, Shan G, Sun J, Song K, Zeng Y. Label-free detection of multiple genitourinary cancers from urine by surface-enhanced Raman spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 240:118543. [PMID: 32526394 DOI: 10.1016/j.saa.2020.118543] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 05/08/2020] [Accepted: 05/22/2020] [Indexed: 05/20/2023]
Abstract
Detecting cancers through testing biological fluids, namely, "liquid biopsy", is noninvasive and shows great promise in cancer diagnosis, surveillance and screening. Many metabolites that may reflect cancer specificity are concentrated in and excreted through urine. In this study, urine samples were collected from healthy subjects and patients with bladder or prostate cancer. By using surface-enhanced Raman spectroscopy (SERS) with silver nanoparticles, urine sample spectra from 500-1800 cm-1 were obtained. The spectra were classified by principal component analysis and linear discriminant analysis (PCA-LDA). The results showed that the classification accuracy of the model for healthy individuals, bladder cancer patients and prostate cancer patients was 91.9%, and the classification accuracy of the test set was 89%, which indicated that SERS combined with the PCA-LDA diagnostic algorithm could be used as a classification and diagnostic tool to detect and distinguish bladder cancer and prostate cancer through testing urine.
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Affiliation(s)
- Xiaoyu Cui
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China; Key Laboratory of Data Analytics and Optimization for Smart Industry, Northeastern University, Shenyang, Liaoning, China
| | - Tao Liu
- Department of Urology, The First Hospital of China Medical University, Shenyang, Liaoning, China
| | - Xiaosong Xu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Zeyin Zhao
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Ye Tian
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Yue Zhao
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Shuo Chen
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Zhe Wang
- Department of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, Liaoning, China
| | - Yiding Wang
- Department of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, Liaoning, China
| | - Dayu Hu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Shui Fu
- Department of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, Liaoning, China
| | - Guangyi Shan
- Department of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, Liaoning, China
| | - Jiarun Sun
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Kaixin Song
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, Liaoning, China
| | - Yu Zeng
- Department of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, Liaoning, China.
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De Luca AC, Dholakia K, Mazilu M. Modulated Raman Spectroscopy for Enhanced Cancer Diagnosis at the Cellular Level. SENSORS 2015; 15:13680-704. [PMID: 26110401 PMCID: PMC4507596 DOI: 10.3390/s150613680] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Revised: 05/22/2015] [Accepted: 05/24/2015] [Indexed: 11/28/2022]
Abstract
Raman spectroscopy is emerging as a promising and novel biophotonics tool for non-invasive, real-time diagnosis of tissue and cell abnormalities. However, the presence of a strong fluorescence background is a key issue that can detract from the use of Raman spectroscopy in routine clinical care. The review summarizes the state-of-the-art methods to remove the fluorescence background and explores recent achievements to address this issue obtained with modulated Raman spectroscopy. This innovative approach can be used to extract the Raman spectral component from the fluorescence background and improve the quality of the Raman signal. We describe the potential of modulated Raman spectroscopy as a rapid, inexpensive and accurate clinical tool to detect the presence of bladder cancer cells. Finally, in a broader context, we show how this approach can greatly enhance the sensitivity of integrated Raman spectroscopy and microfluidic systems, opening new prospects for portable higher throughput Raman cell sorting.
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Affiliation(s)
- Anna Chiara De Luca
- Institute of Protein Biochemistry, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
| | - Kishan Dholakia
- SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh KY16 9SS, St Andrews, UK.
| | - Michael Mazilu
- SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh KY16 9SS, St Andrews, UK.
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3
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Ferrara MA, Di Caprio G, Managò S, De Angelis A, Sirleto L, Coppola G, De Luca AC. Label-free imaging and biochemical characterization of bovine sperm cells. BIOSENSORS-BASEL 2015; 5:141-57. [PMID: 25836358 PMCID: PMC4493542 DOI: 10.3390/bios5020141] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 02/18/2015] [Accepted: 03/24/2015] [Indexed: 12/15/2022]
Abstract
A full label-free morphological and biochemical characterization is desirable to select spermatozoa during preparation for artificial insemination. In order to study these fundamental parameters, we take advantage of two attractive techniques: digital holography (DH) and Raman spectroscopy (RS). DH presents new opportunities for studying morphological aspect of cells and tissues non-invasively, quantitatively and without the need for staining or tagging, while RS is a very specific technique allowing the biochemical analysis of cellular components with a spatial resolution in the sub-micrometer range. In this paper, morphological and biochemical bovine sperm cell alterations were studied using these techniques. In addition, a complementary DH and RS study was performed to identify X- and Y-chromosome-bearing sperm cells. We demonstrate that the two techniques together are a powerful and highly efficient tool elucidating some important criterions for sperm morphological selection and sex-identification, overcoming many of the limitations associated with existing protocols.
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Affiliation(s)
- Maria Antonietta Ferrara
- Institute for Microelectronics and Microsystems, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
| | - Giuseppe Di Caprio
- Institute for Microelectronics and Microsystems, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
- Rowland Institute, Harvard University, Cambridge, MA 02142, USA.
| | - Stefano Managò
- Institute of Protein Biochemistry, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
| | - Annalisa De Angelis
- Institute of Protein Biochemistry, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
| | - Luigi Sirleto
- Institute for Microelectronics and Microsystems, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
| | - Giuseppe Coppola
- Institute for Microelectronics and Microsystems, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
| | - Anna Chiara De Luca
- Institute of Protein Biochemistry, National Research Council, Via P. Castellino, 111, 80131 Naples, Italy.
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4
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De Luca AC, Reader-Harris P, Mazilu M, Mariggiò S, Corda D, Di Falco A. Reproducible surface-enhanced Raman quantification of biomarkers in multicomponent mixtures. ACS NANO 2014; 8:2575-2583. [PMID: 24524333 DOI: 10.1021/nn406200y] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Direct and quantitative detection of unlabeled glycerophosphoinositol (GroPIns), an abundant cytosolic phosphoinositide derivative, would allow rapid evaluation of several malignant cell transformations. Here we report label-free analysis of GroPIns via surface-enhanced Raman spectroscopy (SERS) with a sensitivity of 200 nM, well below its apparent concentration in cells. Crucially, our SERS substrates, based on lithographically defined gold nanofeatures, can be used to predict accurately the GroPIns concentration even in multicomponent mixtures, avoiding the preliminary separation of individual compounds. Our results represent a critical step toward the creation of SERS-based biosensor for rapid, label-free, and reproducible detection of specific molecules, overcoming limits of current experimental methods.
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Affiliation(s)
- Anna Chiara De Luca
- Institute of Protein Biochemistry, National Research Council , Via P. Castellino 111, 80131 Naples, Italy
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5
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Praveen BB, Steuwe C, Mazilu M, Dholakia K, Mahajan S. Wavelength modulated surface enhanced (resonance) Raman scattering for background-free detection. Analyst 2013; 138:2816-20. [PMID: 23562981 DOI: 10.1039/c3an00043e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Spectra in surface-enhanced Raman scattering (SERS) are always accompanied by a continuum emission called the 'background' which complicates analysis and is especially problematic for quantification and automation. Here, we implement a wavelength modulation technique to eliminate the background in SERS and its resonant version, surface-enhanced resonance Raman scattering (SERRS). This is demonstrated on various nanostructured substrates used for SER(R)S. An enhancement in the signal to noise ratio for the Raman bands of the probe molecules is also observed. This technique helps to improve the analytical ability of SERS by alleviating the problem due to the accompanying background and thus making observations substrate independent.
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Affiliation(s)
- Bavishna B Praveen
- SUPA, School of Physics & Astronomy, University of St Andrews, North Haugh, St Andrews, Fife, Scotland KY16 9SS, UK
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6
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Diem M, Mazur A, Lenau K, Schubert J, Bird B, Miljković M, Krafft C, Popp J. Molecular pathology via IR and Raman spectral imaging. JOURNAL OF BIOPHOTONICS 2013; 6:855-86. [PMID: 24311233 DOI: 10.1002/jbio.201300131] [Citation(s) in RCA: 126] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2013] [Accepted: 09/03/2013] [Indexed: 05/21/2023]
Abstract
During the last 15 years, vibrational spectroscopic methods have been developed that can be viewed as molecular pathology methods that depend on sampling the entire genome, proteome and metabolome of cells and tissues, rather than probing for the presence of selected markers. First, this review introduces the background and fundamentals of the spectroscopies underlying the new methodologies, namely infrared and Raman spectroscopy. Then, results are presented in the context of spectral histopathology of tissues for detection of metastases in lymph nodes, squamous cell carcinoma, adenocarcinomas, brain tumors and brain metastases. Results from spectral cytopathology of cells are discussed for screening of oral and cervical mucosa, and circulating tumor cells. It is concluded that infrared and Raman spectroscopy can complement histopathology and reveal information that is available in classical methods only by costly and time-consuming steps such as immunohistochemistry, polymerase chain reaction or gene arrays. Due to the inherent sensitivity toward changes in the bio-molecular composition of different cell and tissue types, vibrational spectroscopy can even provide information that is in some cases superior to that of any one of the conventional techniques.
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Affiliation(s)
- Max Diem
- Laboratory for Spectral Diagnosis LSpD, Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA 02115, USA
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Dochow S, Becker M, Spittel R, Beleites C, Stanca S, Latka I, Schuster K, Kobelke J, Unger S, Henkel T, Mayer G, Albert J, Rothhardt M, Krafft C, Popp J. Raman-on-chip device and detection fibres with fibre Bragg grating for analysis of solutions and particles. LAB ON A CHIP 2013; 13:1109-13. [PMID: 23344502 DOI: 10.1039/c2lc41169e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
An all-fibre based Raman-on-chip setup is introduced which enables analysis of solutions and trapped particles without microscopes or objectives. Beside the novel quartz microfluidic chip, innovative multi-core single-mode fibres with integrated fibre Bragg gratings are used for detection. The limit of quantitation is 7.5 mM for urea and 2.5 mM for nicotine with linear Raman spectroscopy. This is an improvement of more than two orders of magnitude compared with previous fibre-based microfluidic Raman detection schemes. Furthermore, our device was combined with optical traps to collect Raman-on-chip spectra of spherical polymer beads.
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Affiliation(s)
- Sebastian Dochow
- Institute of Photonic Technology (IPHT), Albert Einstein Strasse 9, 07745 Jena, Germany
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8
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Microfluidic Raman Spectroscopy for Bio-chemical Sensing and Analysis. SPRINGER SERIES ON CHEMICAL SENSORS AND BIOSENSORS 2012. [DOI: 10.1007/978-3-642-25498-7_9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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Ashok PC, Praveen BB, Dholakia K. Near infrared spectroscopic analysis of single malt Scotch whisky on an optofluidic chip. OPTICS EXPRESS 2011; 19:22982-92. [PMID: 22109177 DOI: 10.1364/oe.19.022982] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Standardization and quality monitoring of alcoholic beverages is an important issue in the liquor production industry. Various spectroscopic techniques have proved useful for tackling this problem. An ideal sensing device for alcoholic beverages should be able to detect the quality of alcohol with a small amount of sample at a low acquisition time using a portable and easy to use device. We propose the use of near infra-red spectroscopy on an optofluidic chip for quality monitoring of single malt Scotch whisky. This is chip upon which we have previously realized waveguide confined Raman spectroscopy. Analysis on this alignment-free, portable chip may be performed in only 2 seconds with a sample volume of only 20 µl. Using a partial least square (PLS) calibration, we demonstrate that the alcohol content in the beverage may be predicted to within a 1% prediction error. Principal component analysis (PCA) was employed for successful classification of whiskies based upon their age, type and cask. The prospect of implementing an optofluidic analogue of a conventional fiber based spectroscopic probe allows a rapid analysis of alcoholic beverages with dramatically reduced sample volumes.
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Affiliation(s)
- Praveen C Ashok
- SUPA, School of Physics and Astronomy, University of St Andrews, North Haugh, Fife, Scotland, UK.
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