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Zheng S, Yingsa H, Meichen S, Qi M. Quantitative photoacoustic tomography with light fluence compensation based on radiance Monte Carlo model. Phys Med Biol 2023; 68. [PMID: 36821863 DOI: 10.1088/1361-6560/acbe90] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 02/23/2023] [Indexed: 02/25/2023]
Abstract
Objective. Photoacoustic tomography (PAT) is a rapidly evolving imaging modality that provides images with high contrast and spatial resolution showing the optical properties of biological tissues. The photoacoustic pressure is proportional to the product of the optical absorption coefficient and the local light fluence. The essential challenge in reconstructing quantitative images representing spatially varying absorption coefficients is the unknown light fluence. In addition, optical attenuation induces spatial variations in the light fluence, and the heterogeneity of the fluence determines the limits of reconstruction quality and depth.Approach.In this work, a reconstruction enhancement scheme is proposed to compensate for the variation in the light fluence in the absorption coefficient recovery. The inverse problem of the radiance Monte Carlo model describing light transport through the tissue is solved by using an alternating optimization strategy. In the iteration, the absorption coefficients and photon weights are alternately updated.Main results.The method provides highly accurate quantitative images of absorption coefficients in simulations, phantoms, andin vivostudies. The results show that the method has great potential for improving the accuracy of absorption coefficient recovery compared to conventional reconstruction methods that ignore light fluence variations. Comparison with state-of-the-art fluence compensation methods shows significant improvements in root mean square error, normalized mean square absolute distance, and structural similarity metrics.Significance.This method achieves high precision quantitative imaging by compensating for nonuniform light fluence without increasing the complexity and operation of the imaging system.
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Affiliation(s)
- Sun Zheng
- Department of Electronic and Communication Engineering, North China Electric Power University, Baoding 071003, Hebei, People's Republic of China
- Hebei Key Laboratory of Power Internet of Things Technology, North China Electric Power University, Baoding 071003, Hebei, People's Republic of China
| | - Hou Yingsa
- Department of Electronic and Communication Engineering, North China Electric Power University, Baoding 071003, Hebei, People's Republic of China
| | - Sun Meichen
- Department of Electronic and Communication Engineering, North China Electric Power University, Baoding 071003, Hebei, People's Republic of China
| | - Meng Qi
- Department of Electronic and Communication Engineering, North China Electric Power University, Baoding 071003, Hebei, People's Republic of China
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Ozbek A, Dean-Ben XL, Razansky D. Universal Real-Time Adaptive Signal Compression for High-Frame-Rate Optoacoustic Tomography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:2903-2911. [PMID: 35588420 DOI: 10.1109/tmi.2022.3175471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Optoacoustic tomography (OAT) has recently been advanced toward ultrafast volumetric imaging frame rates in the kilohertz range. As a result, excessive data processing and storage capacity requirements are increasingly being imposed on the imaging systems. OAT data commonly exhibit significant sparsity across the spatial, temporal or spectral domains, which facilitated the development of compressed sensing algorithms exploiting various sparse acquisition and under-sampling schemes to reduce data rates. However, performance of compressed sensing critically depends on a priori knowledge on the type of acquired data and/or imaged object, commonly resulting in lack of general applicability and unpredictable image quality. In this work, we report on a fast adaptive OAT data compression framework operating on fully sampled tomographic data. It is based on a wavelet packet transform that maximizes the data compression ratio according to the desired signal energy loss. A dedicated reconstruction method was further developed that efficiently renders images directly from the compressed data. Up to 1000x compression ratios were achieved while providing efficient control over the resulting image quality from arbitrary datasets exhibiting diverse spatial, temporal and spectral characteristics. Our approach enables faster and longer acquisitions and facilitates long-term storage of large OAT datasets.
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Robin J, Ozbek A, Reiss M, Dean-Ben XL, Razansky D. Dual-Mode Volumetric Optoacoustic and Contrast Enhanced Ultrasound Imaging With Spherical Matrix Arrays. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:846-856. [PMID: 34735340 DOI: 10.1109/tmi.2021.3125398] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Spherical matrix arrays represent an advantageous tomographic detection geometry for non-invasive deep tissue mapping of vascular networks and oxygenation with volumetric optoacoustic tomography (VOT). Hybridization of VOT with ultrasound (US) imaging remains difficult with this configuration due to the relatively large inter-element pitch of spherical arrays. We suggest a new approach for combining VOT and US contrast-enhanced 3D imaging employing injection of clinically-approved microbubbles. Power Doppler (PD) and US localization imaging were enabled with a sparse US acquisition sequence and model-based inversion based on infimal convolution of total variation (ICTV) regularization. In vitro experiments in tissue-mimicking phantoms and in living mouse brain demonstrate the powerful capabilities of the new dual-mode imaging approach attaining 80 μm spatial resolution and a more than 10 dB signal to noise improvement with respect to a classical delay and sum beamformer. Microbubble localization and tracking allowed for flow velocity mapping up to 40 mm/s.
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Ultrafast four-dimensional imaging of cardiac mechanical wave propagation with sparse optoacoustic sensing. Proc Natl Acad Sci U S A 2021; 118:2103979118. [PMID: 34732573 DOI: 10.1073/pnas.2103979118] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/21/2021] [Indexed: 12/25/2022] Open
Abstract
Propagation of electromechanical waves in excitable heart muscles follows complex spatiotemporal patterns holding the key to understanding life-threatening arrhythmias and other cardiac conditions. Accurate volumetric mapping of cardiac wave propagation is currently hampered by fast heart motion, particularly in small model organisms. Here we demonstrate that ultrafast four-dimensional imaging of cardiac mechanical wave propagation in entire beating murine heart can be accomplished by sparse optoacoustic sensing with high contrast, ∼115-µm spatial and submillisecond temporal resolution. We extract accurate dispersion and phase velocity maps of the cardiac waves and reveal vortex-like patterns associated with mechanical phase singularities that occur during arrhythmic events induced via burst ventricular electric stimulation. The newly introduced cardiac mapping approach is a bold step toward deciphering the complex mechanisms underlying cardiac arrhythmias and enabling precise therapeutic interventions.
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Degtyaruk O, Nozdriukhin D, Razansky D, Deán-Ben XL. In situ characterization of microparticulate optoacoustic contrast agents in an intracardiac perfusion mouse model. OPTICS LETTERS 2021; 46:4350-4353. [PMID: 34470012 DOI: 10.1364/ol.435360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 07/21/2021] [Indexed: 06/13/2023]
Abstract
Extrinsically administered light-absorbing agents may greatly enhance the sensitivity and imaging performance of optoacoustic tomography (OAT). Beyond the use of targeted contrast agents in functional and molecular imaging applications, tracking of highly absorbing microparticles has recently been shown to facilitate super-resolution volumetric angiography and mapping of blood flow. However, in vivo characterization of new types of microparticulate absorbing agents is often hindered due to their potential toxicity, incompatible dimensions, or sub-optimal extinction spectrum shadowed by strong background absorption of hemoglobin. Herein, we used an intracardiac perfusion mouse model to individually track the perfusion of absorbing particles through the cerebral vasculature by acquiring a sequence of high-frame-rate 3D OAT images. The particles were injected in the left ventricle of the heart after substitution of blood by an artificial cerebrospinal fluid post mortem, which has further contributed to minimizing the background OAT signals induced by hemoglobin absorption. The presented approach can greatly aid the development of new microparticulate contrast agents with optimized performance for various OAT imaging applications.
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Estrada H, Ozbek A, Robin J, Shoham S, Razansky D. Spherical Array System for High-Precision Transcranial Ultrasound Stimulation and Optoacoustic Imaging in Rodents. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2021; 68:107-115. [PMID: 32406833 PMCID: PMC7952015 DOI: 10.1109/tuffc.2020.2994877] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Ultrasound can be delivered transcranially to ablate brain tissue, open the blood-brain barrier, or affect neural activity. Transcranial focused ultrasound in small rodents is typically done with low-frequency single-element transducers, which results in unspecific targeting and impedes the concurrent use of fast neuroimaging methods. In this article, we devised a wide-angle spherical array bidirectional interface for high-resolution parallelized optoacoustic imaging and transcranial ultrasound (POTUS) delivery in the same target regions. The system operates between 3 and 9 MHz, allowing to generate and steer focal spots with widths down to [Formula: see text] across a field of view covering the entire mouse brain, while the same array is used to capture high-resolution 3-D optoacoustic data in real time. We showcase the system's versatile beam-forming capacities as well as volumetric optoacoustic imaging capabilities and discuss its potential to noninvasively monitor brain activity and various effects of ultrasound emission.
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Ozbekxs A, Dean-Ben XL, Razansky D. Compressed Optoacoustic Sensing of Volumetric Cardiac Motion. IEEE TRANSACTIONS ON MEDICAL IMAGING 2020; 39:3250-3255. [PMID: 32746091 DOI: 10.1109/tmi.2020.2985134] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The recently developed optoacoustic tomography systems have attained volumetric frame rates exceeding 100 Hz, thus opening up new venues for studying previously invisible biological dynamics. Further gains in temporal resolution can potentially be achieved via partial data acquisition, though a priori knowledge on the acquired data is essential for rendering accurate reconstructions using compressed sensing approaches. In this work, we suggest a machine learning method based on principal component analysis for high-frame-rate volumetric cardiac imaging using only a few tomographic optoacoustic projections. The method is particularly effective for discerning periodic motion, as demonstrated herein by non-invasive imaging of a beating mouse heart. A training phase enables efficiently compressing the heart motion information, which is subsequently used as prior information for image reconstruction from sparse sampling at a higher frame rate. It is shown that image quality is preserved with a 64-fold reduction in the data flow. We demonstrate that, under certain conditions, the volumetric motion could effectively be captured by relying on time-resolved data from a single optoacoustic detector. Feasibility of capturing transient (non-periodic) events not registered in the training phase is further demonstrated by visualizing perfusion of a contrast agent in vivo. The suggested approach can be used to significantly boost the temporal resolution of optoacoustic imaging and facilitate development of more affordable and data efficient systems.
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Chen Z, Özbek A, Rebling J, Zhou Q, Deán-Ben XL, Razansky D. Multifocal structured illumination optoacoustic microscopy. LIGHT, SCIENCE & APPLICATIONS 2020; 9:152. [PMID: 32922766 PMCID: PMC7459102 DOI: 10.1038/s41377-020-00390-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 08/15/2020] [Accepted: 08/18/2020] [Indexed: 05/06/2023]
Abstract
Optoacoustic (OA) imaging has the capacity to effectively bridge the gap between macroscopic and microscopic realms in biological imaging. High-resolution OA microscopy has so far been performed via point-by-point scanning with a focused laser beam, thus greatly restricting the achievable imaging speed and/or field of view. Herein we introduce multifocal structured illumination OA microscopy (MSIOAM) that attains real-time 3D imaging speeds. For this purpose, the excitation laser beam is shaped to a grid of focused spots at the tissue surface by means of a beamsplitting diffraction grating and a condenser and is then scanned with an acousto-optic deflector operating at kHz rates. In both phantom and in vivo mouse experiments, a 10 mm wide volumetric field of view was imaged with 15 Hz frame rate at 28 μm spatial resolution. The proposed method is expected to greatly aid in biological investigations of dynamic functional, kinetic, and metabolic processes across multiple scales.
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Affiliation(s)
- Zhenyue Chen
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Ali Özbek
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Johannes Rebling
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Quanyu Zhou
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Xosé Luís Deán-Ben
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Daniel Razansky
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Zurich, Switzerland
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Deán-Ben XL, Weidenfeld I, Degtyaruk O, Ntziachristos V, Stiel AC, Razansky D. Deep tissue volumetric optoacoustic tracking of individual circulating tumor cells in an intracardially perfused mouse model. Neoplasia 2020; 22:441-446. [PMID: 32653834 PMCID: PMC7355386 DOI: 10.1016/j.neo.2020.06.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 06/16/2020] [Accepted: 06/17/2020] [Indexed: 01/15/2023] Open
Abstract
Widespread metastasis is the major cause of death from melanoma and other types of cancer. At present, the dynamic aspects of the metastatic cascade remain enigmatic. The feasibility to track circulating melanoma cells deep within living intact organisms can greatly impact our knowledge on tumor metastasis, but existing imaging approaches lack the sensitivity, spatio-temporal resolution or penetration depth to capture flowing tumor cells over large fields of view within optically-opaque biological tissues. Vast progress with the development of optoacoustic tomography technologies has recently enabled two- and three-dimensional imaging at unprecedented frame rates in the order of hundreds of Hertz, effectively mapping up to a million image voxels within a single volumetric snapshot. Herein, we employ volumetric optoacoustic tomography for real-time visualization of passage and trapping of individual B16 melanoma cells in the whole mouse brain. Detection of individual circulating melanoma cells was facilitated by substituting blood with an artificial cerebrospinal fluid that removes the strong absorption background in the optoacoustic images. The approach can provide new opportunities for studying trafficking and accumulation of metastatic melanoma cells in different organs.
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Affiliation(s)
- Xosé Luís Deán-Ben
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Switzerland; Institute of Biological and Medical Imaging (IBMI), Technical University of Munich and Helmholtz Center Munich, Germany.
| | - Ina Weidenfeld
- Institute of Biological and Medical Imaging (IBMI), Technical University of Munich and Helmholtz Center Munich, Germany
| | - Oleksiy Degtyaruk
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Switzerland; Institute of Biological and Medical Imaging (IBMI), Technical University of Munich and Helmholtz Center Munich, Germany
| | - Vasilis Ntziachristos
- Institute of Biological and Medical Imaging (IBMI), Technical University of Munich and Helmholtz Center Munich, Germany
| | - Andre C Stiel
- Institute of Biological and Medical Imaging (IBMI), Technical University of Munich and Helmholtz Center Munich, Germany
| | - Daniel Razansky
- Institute for Biomedical Engineering and Institute of Pharmacology and Toxicology, University of Zurich and ETH Zurich, Switzerland; Institute of Biological and Medical Imaging (IBMI), Technical University of Munich and Helmholtz Center Munich, Germany
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Chen Z, Deán-Ben XL, Liu N, Gujrati V, Gottschalk S, Ntziachristos V, Razansky D. Concurrent fluorescence and volumetric optoacoustic tomography of nanoagent perfusion and bio-distribution in solid tumors. BIOMEDICAL OPTICS EXPRESS 2019; 10:5093-5102. [PMID: 31646032 PMCID: PMC6788589 DOI: 10.1364/boe.10.005093] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 06/27/2019] [Accepted: 06/27/2019] [Indexed: 05/08/2023]
Abstract
Intravenously administered liposomes and other nano-sized particles are known to passively accumulate in solid tumors via the enhanced permeability and retention (EPR) effect, which is extensively explored toward the improvement of diagnosis and drug delivery in oncology. Agent extravasation into tumors is often hampered by the mononuclear phagocytic and renal systems, which sequester and/or eliminate most of the nanoparticles from the body. Dynamic imaging of the tumor microcirculation and bolus perfusion can thus facilitate optimization of the nanoparticle delivery. When it comes to non-invasive visualization of rapid biological dynamics in whole tumors, the currently available pre-clinical imaging modalities are commonly limited by shallow penetration, lack of suitable contrast or otherwise insufficient spatial or temporal resolution. Herein, we demonstrate the unique capabilities of a combined epi-fluorescence and optoacoustic tomography (FLOT) system for characterizing contrast agent dynamics in orthotopic breast tumors in mice. A liposomal indocyanine green (Lipo-ICG) preparation was administered intravenously with the time-lapse data continuously acquired during and after the injection procedure. In addition to the highly sensitive detection of the fluorescence agent by the epi-fluorescence modality, the volumetric multi-spectral optoacoustic tomography readings further enabled resolving deep-seated vascular structures with high spatial resolution and hence provided accurate readings of the dynamic bio-distribution of nanoparticles in the entire tumor in 3D. The synergetic combination of the two modalities can become a powerful tool in cancer research and potentially aid the diagnosis, staging and treatment guidance of certain types of cancer in the clinical setting.
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Affiliation(s)
- Zhenyue Chen
- Faculty of Medicine and Institute of Pharmacology and Toxicology, University of Zurich, Switzerland
- Institute for Biomedical Engineering and Department of Information Technology and Electrical Engineering, ETH Zurich, Switzerland
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
| | - Xosé Luis Deán-Ben
- Faculty of Medicine and Institute of Pharmacology and Toxicology, University of Zurich, Switzerland
- Institute for Biomedical Engineering and Department of Information Technology and Electrical Engineering, ETH Zurich, Switzerland
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
| | - Nian Liu
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
- Faculty of Medicine, Technical University of Munich, Germany
| | - Vipul Gujrati
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
| | - Sven Gottschalk
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
| | - Vasilis Ntziachristos
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
- Faculty of Medicine, Technical University of Munich, Germany
| | - Daniel Razansky
- Faculty of Medicine and Institute of Pharmacology and Toxicology, University of Zurich, Switzerland
- Institute for Biomedical Engineering and Department of Information Technology and Electrical Engineering, ETH Zurich, Switzerland
- Institute for Biological and Medical Imaging, Helmholtz Center Munich, Neuherberg, Germany
- Faculty of Medicine, Technical University of Munich, Germany
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