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Evaluation of the electronic structure and charge transfer in the Cu2O22+ core using multiconfigurational methods. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2570-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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2
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Nikolaienko TY. The maximum occupancy condition for the localized property-optimized orbitals. Phys Chem Chem Phys 2019; 21:5285-5294. [PMID: 30778429 DOI: 10.1039/c8cp07276k] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
It is shown analytically that the Chemist's Localized Property-optimized Orbitals (CLPOs), which are the localized orbitals obtainable from the results of ab initio calculations by the open-source program JANPA (http://janpa.sourceforge.net/) according to the recently proposed optimal property partitioning condition, form the Lewis structure with nearly maximum possible total electron occupancy. The conditions required for this additional optimality to hold are discussed. In particular, when a single-determinant wavefunction is used to describe the molecular system without a noticeable electron delocalization, CLPOs derived from this wavefunction approximately optimize the same target quantity as the Natural Bond Orbitals (NBOs), establishing in this way the link between the two sets of localized orbitals. The performance of CLPO and NBO methods is compared by using a dataset containing 7101 small molecules, and the relevant methodological features of both methods are discussed.
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Affiliation(s)
- Tymofii Yu Nikolaienko
- Faculty of Physics of Taras Shevchenko National University of Kyiv, 64/13 Volodymyrska Str., Kyiv 01601, Ukraine.
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3
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Ben Amor N, Hoyau S, Maynau D, Brenner V. Low-lying excited states of model proteins: Performances of the CC2 method versus multireference methods. J Chem Phys 2018; 148:184105. [DOI: 10.1063/1.5025942] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Affiliation(s)
- Nadia Ben Amor
- CNRS, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118, Rte de Narbonne, F-31062 Toulouse Cedex, France
- UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, Université de Toulouse, 118, Rte de Narbonne, F-31062 Toulouse Cedex, France
| | - Sophie Hoyau
- UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, Université de Toulouse, 118, Rte de Narbonne, F-31062 Toulouse Cedex, France
| | - Daniel Maynau
- CNRS, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118, Rte de Narbonne, F-31062 Toulouse Cedex, France
- UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, Université de Toulouse, 118, Rte de Narbonne, F-31062 Toulouse Cedex, France
| | - Valérie Brenner
- Laboratoire Interactions, Dynamiques et Lasers, LIDYL, CEA, CNRS, Université Paris-Saclay, 91191 Gif-sur-Yvette Cedex, France
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4
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Marín IM, Auffrant A. Phosphasalen vs. Salen Ligands: What Does the Phosphorus Change? Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201701210] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Irene Mustieles Marín
- LCM, CNRS-Ecole polytechnique; Université Paris-Saclay; F-91128 Palaiseau Cedex France
| | - Audrey Auffrant
- LCM, CNRS-Ecole polytechnique; Université Paris-Saclay; F-91128 Palaiseau Cedex France
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5
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Toledo L, Aguirre C. Enzymatic browning in avocado (Persea americana) revisited: History, advances, and future perspectives. Crit Rev Food Sci Nutr 2018; 57:3860-3872. [PMID: 27172067 DOI: 10.1080/10408398.2016.1175416] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Considering nearly 80 years of research regarding one of the enzymes responsible for catalyzing the formation of pigments in higher animals, plants, fungi and bacteria, this review will focus on collecting and categorizing the existing information about polyphenol oxidase (PPO) in fruits, with particular emphasis on the information in relation to avocado, which is one of the hardiest species in terms of inactivation, has documented dual activity (EC 1.14.18.1/EC 1.10.3.1), and represents one of the oldest challenges for food science research and fruit processors. It is expected that this review will contribute to the further development of the field by highlighting the questions that have arisen during the characterization of PPO, the progress that has been made and the questions that remain today, in addition to new methodologies that are being applied to study this system. Holistic methodologies offer unexplored potential for advancing our understanding of the complex phenomena that govern PPO activity in fruits, because these methodologies will enable the characterization of this family of enzymes in all of its complexity. Subsequently, it will be possible to develop better techniques for controlling enzymatic browning in this valuable fruit.
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Affiliation(s)
- Lea Toledo
- a School of Food Engineering , Pontificia Universidad Católica de Valparaíso , Valparaíso , Chile
| | - Carolina Aguirre
- b Research Center for Biodiversity and Sustainable Environments (CIBAS) , Universidad Católica de la Santísima Concepción , Concepción , Chile
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6
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Mustieles Marín I, Cheisson T, Singh-Chauhan R, Herrero C, Cordier M, Clavaguéra C, Nocton G, Auffrant A. Electronic Structures of Mono-Oxidized Copper and Nickel Phosphasalen Complexes. Chemistry 2017; 23:17940-17953. [PMID: 28980736 DOI: 10.1002/chem.201703390] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Indexed: 11/11/2022]
Abstract
Non-innocent ligands render the determination of the electronic structure in metal complexes difficult. As such, a combination of experimental techniques and quantum chemistry are required to correctly elucidate them. This paper deals with the one-electron oxidation of copper(II) and nickel(II) complexes featuring a phosphasalen ligand (Psalen), which differs from salen analogues by the presence of iminophosphorane groups (P=N) instead of imines. Various experimental techniques (X-ray diffraction, cyclic voltammetry, NMR, EPR, and UV/Vis spectroscopies, and magnetic measurements) as well as quantum chemical calculations were used to define the electronic structure of the oxidized complexes. These can be modified by a small change in the ligand structure, that is, the replacement of a tert-butyl group by a methoxy on the phenoxide ring. The different techniques have allowed quantifying the amount of spin density located on the metal center and on the Psalen ligands. All complexes were found to possess a multi-configurational ground state, in which the ratio of the +II versus +III oxidation state of the metal center, and therefore the phenolate versus phenoxyl radical ligand character, varies upon the substituents. The tert-butyl group favors a strong localization on the metal center whereas with the methoxy group the metallic configurations decrease and the ligand configurations increase. The importance of the geometrical considerations compared with the electronic substituent effect is highlighted by the differences observed between the solid-state (EPR, magnetic measurements) and solution characterizations (EPR and NMR data).
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Affiliation(s)
- Irene Mustieles Marín
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France
| | - Thibault Cheisson
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France
| | - Rohit Singh-Chauhan
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France
| | - Christian Herrero
- Institut de Chimie Moléculaire et des Matériaux d'Orsay, UMR 8182 CNRS-Univ. Paris-Sud, Univ. Paris Saclay, 91405, Orsay Cedex, France
| | - Marie Cordier
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France
| | - Carine Clavaguéra
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France.,Laboratoire de Chimie Physique, CNRS-Université Paris-Sud, Université Paris-Saclay, 15 avenue Jean Perrin, 91405, Orsay, France
| | - Grégory Nocton
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France
| | - Audrey Auffrant
- LCM, CNRS-Ecole polytechnique, Université Paris-Saclay, 91128, Palaiseau Cedex, France
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7
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Chien AD, Zimmerman PM. Recovering dynamic correlation in spin flip configuration interaction through a difference dedicated approach. J Chem Phys 2017; 146:014103. [DOI: 10.1063/1.4973245] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Alcover-Fortuny G, Caballol R, Pierloot K, de Graaf C. Role of the Imide Axial Ligand in the Spin and Oxidation State of Manganese Corrole and Corrolazine Complexes. Inorg Chem 2016; 55:5274-80. [DOI: 10.1021/acs.inorgchem.6b00194] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Gerard Alcover-Fortuny
- Departament de Química
Física i Inorgànica, Universitat Rovira i Virgili, Marcel·lí
Domingo s/n, 43007 Tarragona, Spain
| | - Rosa Caballol
- Departament de Química
Física i Inorgànica, Universitat Rovira i Virgili, Marcel·lí
Domingo s/n, 43007 Tarragona, Spain
| | - Kristine Pierloot
- Department of Chemistry, University of Leuven, Celestijnenlaan 200F, B-3001 Heverlee-Leuven, Belgium
| | - Coen de Graaf
- Departament de Química
Física i Inorgànica, Universitat Rovira i Virgili, Marcel·lí
Domingo s/n, 43007 Tarragona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluis Companys 23, 08010, Barcelona, Spain
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9
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Tomson NC, Williams KD, Dai X, Sproules S, DeBeer S, Warren TH, Wieghardt K. Re-evaluating the Cu K pre-edge XAS transition in complexes with covalent metal-ligand interactions. Chem Sci 2015; 6:2474-2487. [PMID: 29308158 PMCID: PMC5647745 DOI: 10.1039/c4sc03294b] [Citation(s) in RCA: 97] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2014] [Accepted: 02/11/2015] [Indexed: 01/10/2023] Open
Abstract
Three [Me2NN]Cu(η2-L2) complexes (Me2NN = HC[C(Me)NAr]2; L2 = PhNO (2), (3), PhCH[double bond, length as m-dash]CH2 (4); Ar = 2,6-Me2-C6H3; ArF = 3,5-(CF3)2-C6H3) have been studied by Cu K-edge X-ray absorption spectroscopy, as well as single- and multi-reference computational methods (DFT, TD-DFT, CASSCF, MRCI, and OVB). The study was extended to a range of both known and theoretical compounds bearing 2p-element donors as a means of deriving a consistent view of how the pre-edge transition energy responds in systems with significant ground state covalency. The ground state electronic structures of many of the compounds under investigation were found to be strongly influenced by correlation effects, resulting in ground state descriptions with majority contributions from a configuration comprised of a Cu(ii) metal center anti-ferromagentically coupled to radical anion O2, PhNO, and ligands. In contrast, the styrene complex 4, which displays a Cu K pre-edge transition despite its formal d10 electron configuration, exhibits what can best be described as a Cu(i):(styrene)0 ground state with strong π-backbonding. The Cu K pre-edge features for these complexes increase in energy from 1 to 4, a trend that was tracked to the percent Cu(ii)-character in the ground state. The unexpected shift to higher pre-edge transition energies with decreasing charge on copper (Q Cu) contributed to an assignment of the pre-edge features for these species as arising from metal-to-ligand charge transfer instead of the traditional Cu1s → Cu3d designation.
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Affiliation(s)
- Neil C Tomson
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany . ;
| | - Kamille D Williams
- Department of Chemistry , Georgetown University , Box 571227-1227 , Washington, D. C. 20057 , USA .
| | - Xuliang Dai
- Department of Chemistry , Georgetown University , Box 571227-1227 , Washington, D. C. 20057 , USA .
| | - Stephen Sproules
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany . ;
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany . ;
- Department of Chemistry and Chemical Biology , Cornell University , Ithaca , NY 14853 , USA
| | - Timothy H Warren
- Department of Chemistry , Georgetown University , Box 571227-1227 , Washington, D. C. 20057 , USA .
| | - Karl Wieghardt
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany . ;
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Zapata-Rivera J, Caballol R, Calzado CJ. Electronic structure aspects of the complete O2 transfer reaction between Ni(II) and Mn(II) complexes with cyclam ligands. Phys Chem Chem Phys 2015; 17:2814-22. [PMID: 25502350 DOI: 10.1039/c4cp05127k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
This work explores the electronic structure aspects involving the complete intermolecular O2 transfer between Ni(ii) and Mn(ii) complexes, both containing N-tetramethylated cyclams (TMC). The energy of the low-lying states of reactants, intermediates and products is established at the CASSCF level and also the DDCI level when possible. The orthogonal valence bond analysis of the wave functions obtained from CASSCF and DDCI calculations indicates the dominant superoxide nature of all the adducts participating in the reaction, and consequently that the whole reaction can be described as the transfer of the superoxide O2(-) between Ni(ii) and Mn(ii) complexes, without any additional change in the electronic structure of the fragments.
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Affiliation(s)
- Jhon Zapata-Rivera
- Departament de Química Física i Inorgànica, Universitat Rovira i Virgili, Marcel lí Domingo, s/n, 43007 Tarragona, Spain.
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Zapata-Rivera J, Caballol R, Calzado CJ, Liakos DG, Neese F. On the reaction mechanism of the complete intermolecular O2 transfer between mononuclear nickel and manganese complexes with macrocyclic ligands. Chemistry 2014; 20:13296-304. [PMID: 25179780 DOI: 10.1002/chem.201403233] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Indexed: 11/07/2022]
Abstract
The recently described intermolecular O2 transfer between the side-on Ni-O2 complex [(12-TMC)Ni-O2](+) and the manganese complex [(14-TMC)Mn](2+), where 12-TMC and 14-TMC are 12- and 14-membered macrocyclic ligands, 12-TMC=1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclododecane and 14-TMC=1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane, is studied by means of DFT methods. B3LYP calculations including long-range corrections and solvent effects are performed to elucidate the mechanism. The potential energy surfaces (PESs) compatible with different electronic states of the reactants have been analyzed. The calculations confirm a two-step reaction, with a first rate-determining bimolecular step and predict the exothermic character of the global process. The relative stability of the products and the reverse barrier are in line with the fact that no reverse reaction is experimentally observed. An intermediate with a μ-η(1):η(1)-O2 coordination and two transition states are identified on the triplet PES, slightly below the corresponding stationary points of the quintet PES, suggesting an intersystem crossing before the first transition state. The calculated activation parameters and the relative energies of the two transition sates and the products are in very good agreement with the experimental data. The calculations suggest that a superoxide anion is transferred during the reaction.
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Affiliation(s)
- Jhon Zapata-Rivera
- Departament de Química Física i Inorgànica, Universitat Rovira i Virgili, Marcel⋅lí Domingo, s/n, 43007 Tarragona (Spain); Present address: Facultad de Ingeniería, Corporación Universidad de la Costa, Calle 58 # 55-66, Barranquilla (Colombia)
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12
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Saracini C, Liakos DG, Zapata Rivera JE, Neese F, Meyer GJ, Karlin KD. Excitation wavelength dependent O2 release from copper(II)-superoxide compounds: laser flash-photolysis experiments and theoretical studies. J Am Chem Soc 2014; 136:1260-3. [PMID: 24428309 DOI: 10.1021/ja4115314] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Irradiation of the copper(II)-superoxide synthetic complexes [(TMG3tren)Cu(II)(O2)](+) (1) and [(PV-TMPA)Cu(II)(O2)](+) (2) with visible light resulted in direct photogeneration of O2 gas at low temperature (from -40 °C to -70 °C for 1 and from -125 to -135 °C for 2) in 2-methyltetrahydrofuran (MeTHF) solvent. The yield of O2 release was wavelength dependent: λexc = 436 nm, ϕ = 0.29 (for 1), ϕ = 0.11 (for 2), and λexc = 683 nm, ϕ = 0.035 (for 1), ϕ = 0.078 (for 2), which was followed by fast O2-recombination with [(TMG3tren)Cu(I)](+) (3) and [(PV-TMPA)Cu(I)](+) (4). Enthalpic barriers for O2 rebinding to the copper(I) center (∼10 kJ mol(-1)) and for O2 dissociation from the superoxide compound 1 (45 kJ mol(-1)) were determined. TD-DFT studies, carried out for 1, support the experimental results confirming the dissociative character of the excited states formed upon blue- or red-light laser excitation.
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Affiliation(s)
- Claudio Saracini
- Department of Chemistry, The Johns Hopkins University , Baltimore, Maryland 21218, United States
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Chen Y, Sakaki S. Theoretical Study of Mononuclear Nickel(I), Nickel(0), Copper(I), and Cobalt(I) Dioxygen Complexes: New Insight into Differences and Similarities in Geometry and Bonding Nature. Inorg Chem 2013; 52:13146-59. [DOI: 10.1021/ic402059b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yue Chen
- Fukui Institute for Fundamental Chemistry, Kyoto University, Takano-Nishihiraki-cho
34-4, Sakyo-ku, Kyoto 606-8103, Japan
| | - Shigeyoshi Sakaki
- Fukui Institute for Fundamental Chemistry, Kyoto University, Takano-Nishihiraki-cho
34-4, Sakyo-ku, Kyoto 606-8103, Japan
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Győrffy W, Shiozaki T, Knizia G, Werner HJ. Analytical energy gradients for second-order multireference perturbation theory using density fitting. J Chem Phys 2013; 138:104104. [DOI: 10.1063/1.4793737] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Chang C, Calzado CJ, Amor NB, Marin JS, Maynau D. Multi-scale multireference configuration interaction calculations for large systems using localized orbitals: Partition in zones. J Chem Phys 2012; 137:104102. [DOI: 10.1063/1.4747535] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Zapata-Rivera J, Caballol R, Calzado CJ. The role of macrocyclic ligands in the peroxo/superoxo nature of Ni-O2biomimetic complexes. J Comput Chem 2012; 33:1407-15. [DOI: 10.1002/jcc.22965] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2011] [Revised: 02/26/2012] [Accepted: 02/28/2012] [Indexed: 01/17/2023]
Affiliation(s)
- Jhon Zapata-Rivera
- Departament de Química Física i Inorgànica, Universitat Rovira i Virgili, Marcel·lí Domingo, s/n. 43007 Tarragona, Spain
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Angeli C, Calzado CJ, de Graaf C, Caballol R. The electronic structure of Ullman's biradicals: an orthogonal valence bond interpretation. Phys Chem Chem Phys 2011; 13:14617-28. [DOI: 10.1039/c1cp20887j] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zapata-Rivera J, Caballol R, Calzado CJ. Comparing the peroxo/superoxo nature of the interaction between molecular O2 and β-diketiminato-copper and nickel complexes. Phys Chem Chem Phys 2011; 13:20241-7. [DOI: 10.1039/c1cp22121c] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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