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Das B, Chandra A. Ab Initio Molecular Dynamics Study of Aqueous Solutions of Magnesium and Calcium Nitrates: Hydration Shell Structure, Dynamics and Vibrational Echo Spectroscopy. J Phys Chem B 2022; 126:528-544. [PMID: 35001626 DOI: 10.1021/acs.jpcb.1c08545] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ab initio molecular dynamics simulations are performed to study the hydration shell structure, dynamics, and vibrational echo spectroscopy of aqueous Mg(NO3)2 and Ca(NO3)2 solutions. The hydration shell structure is probed through calculations of various ion-ion and ion-water radial and spatial distribution functions. On the dynamical side, calculations have been made for the hydrogen bond dynamics of hydration shells and also residence dynamics and lifetimes of water in different solvation environments. Subsequently, we looked at the dynamics of frequency fluctuations of OD modes of heavy water in different hydration environments. Specifically, the temporal decay of spectral observables of two-dimensional infrared (2DIR) spectroscopy, three pulse echo peak shift (3PEPS) measurements and also of time correlations of frequency fluctuations are calculated to investigate the dynamics of vibrational spectral diffusion of water in different hydration environments in these solutions. The OD stretch frequencies of water molecules in the vicinity of both divalent cations are found to be red-shifted and also fluctuating at a slower rate than other water molecules present in the solutions. The Mg2+ ions are found to be strongly hydrated which can be linked to their lower tendency to form contact ion-pairs and essentially no water exchange between the cationic hydration shells and bulk during the time scale of the current simulations. The stronger hydration of Mg2+ ions make their hydration shells structurally and dynamically more rigid and make the dynamics of hydrogen bonds and vibrational spectral diffusion, as revealed through spectral observables of 2DIR and 3PEPS slower than that for the Ca2+ ions. The structural and spectral dynamics of water molecules outside the cationic solvation shells in the Mg(NO3)2 solution are also found to be relatively slower than that of the Ca(NO3)2 solution and pure water which show the effects of stronger electric fields of Mg2+ ions extending beyond their first hydration shells. Also, water molecules in the hydration shells of the NO3- ions are found to relax at a slower rate in the Mg(NO3)2 solution which manifests the effect countercations have on anionic hydration shells for divalent metal nitrate solutions.
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Affiliation(s)
- Banshi Das
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh 208016, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh 208016, India
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Roy S, Mondal JA. "Breaking" and "Making" of Water Structure at the Air/Water-Electrolyte (NaXO 3; X = Cl, Br, I) Interface. J Phys Chem Lett 2021; 12:1955-1960. [PMID: 33591757 DOI: 10.1021/acs.jpclett.0c03827] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The prevalence of ions at the aqueous interface has been widely recognized, but their effect on the structure of interfacial water (e.g., hydrogen (H)-bonding) remains enigmatic. Using heterodyne-detected vibrational sum frequency generation (HD-VSFG) and Raman difference spectroscopy with simultaneous curve fitting (DS-SCF) analysis, we show that the ion-induced perturbations of H-bonding at the air/water interface and in the bulk water are strongly correlated. Specifically, the structure-breaking anions such as ClO3- decrease the average H-bonding of water at the air/water interface, as it does to the water in its hydration shell in the bulk. The structure-making anion of the same series (IO3-) does exactly the reverse. None of the electrolytes (NaXO3; X = Cl, Br, I) form well-defined electric double layers that significantly increase or reverse the hydrogen-down (H-down) orientation of water at the air/water interface. These results provide a unified picture of specific anion effect at the air/water interface and in the bulk water.
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Affiliation(s)
- Subhadip Roy
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Homi Bhabha National Institute, Trombay, Mumbai 400085, India
| | - Jahur Alam Mondal
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, Homi Bhabha National Institute, Trombay, Mumbai 400085, India
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Yadav S, Chandra A. Transport of hydrated nitrate and nitrite ions through graphene nanopores in aqueous medium. J Comput Chem 2020; 41:1850-1858. [PMID: 32500955 DOI: 10.1002/jcc.26356] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 05/13/2020] [Accepted: 05/17/2020] [Indexed: 11/11/2022]
Abstract
Nitrate ( NO 3 - ) and nitrite ( NO 2 - ) ions are naturally occurring inorganic ions that are part of the nitrogen cycle. High doses of these ions in drinking water impose a potential risk to public health. In this work, molecular dynamics simulations are carried out to study the passage of nitrate and nitrite ions from water through graphene nanosheets (GNS) with hydrogen-functionalized narrow pores in presence of an external electric field. The passage of ions through the pores is investigated through calculations of ion flux, and the results are analyzed through calculations of various structural and thermodynamic properties such as the density of ions and water, ion-water radial distribution functions, two-dimensional density distribution functions, and the potentials of mean force of the ions. Current simulations show that the nitrite ions can pass more in numbers than the nitrate ions in a given time through GNS hydrogen-functionalized pore of different geometry. It is found that the nitrite ions can permeate faster than the nitrate ions despite the former having higher hydration energy in the bulk. This can be explained in terms of the competition between the number density of the ions along the pore axis and the free energy barrier calculated from the potential of mean force. Also, an externally applied electric field is found to be important for faster permeation of the nitrite over the nitrate ions. The current study suggests that graphene nanosheets with carefully created pores can be effective in achieving selective passage of ions from aqueous solutions.
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Affiliation(s)
- Sushma Yadav
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, India.,International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), Ibaraki, Japan
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, India
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Mubita T, Porada S, Aerts P, van der Wal A. Heterogeneous anion exchange membranes with nitrate selectivity and low electrical resistance. J Memb Sci 2020. [DOI: 10.1016/j.memsci.2020.118000] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Sharma B, Chandra A. Dynamics of Water in the Solvation Shell of an Iodate Ion: A Born-Oppenheimer Molecular Dynamics Study. J Phys Chem B 2020; 124:2618-2631. [PMID: 32150681 DOI: 10.1021/acs.jpcb.9b12008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The iodate ion has an anisotropic structure and charge distribution. It has a pyramidal shape with the iodine atom located at the peak of the pyramid. The water molecules interact differently with the positively charged iodine and the negatively charged oxygen atoms of this anion, giving rise to two distinct solvation shells. In the present study, we have performed ab initio Born-Oppenheimer molecular dynamics simulations to investigate the dynamics of water molecules in the iodine and oxygen solvation shells of the iodate ion and compared the behavior with those of the bulk. The dynamics of water is calculated for both the BLYP and the dispersion-corrected BLYP-D3 functionals at room temperature. The dynamics of water in the solvation shells at higher temperatures of 353 and 330 K has also been investigated for the BLYP and BLYP-D3 functionals, respectively. The hydrogen bond dynamics, vibrational spectral diffusion, orientational and translational diffusion, and residence dynamics of water molecules in the two solvation shells are looked at in the current study. The ion-water hydrogen bond dynamics is found to be somewhat faster than that for water-water hydrogen bonds in the bulk, which can be attributed to a ring-like electron distribution on the iodate oxygens. The dynamical trends are connected to the water structure making/breaking properties of the positively charged iodine and negatively charged oxygen sites of the anion. Furthermore, orientational jumps of the iodate ion and also those of surrounding water molecules which are hydrogen bonded to the oxygen atoms of the iodate ion are also investigated. It is found that the nature of these orientational jumps can be different from those reported earlier for planar polyoxyanions such as the nitrate ion.
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Affiliation(s)
- Bikramjit Sharma
- Department of Chemistry, Indian Institute of Technology Kanpur 208016, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur 208016, India
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Chaudhari MI, Vanegas JM, Pratt LR, Muralidharan A, Rempe SB. Hydration Mimicry by Membrane Ion Channels. Annu Rev Phys Chem 2020; 71:461-484. [PMID: 32155383 DOI: 10.1146/annurev-physchem-012320-015457] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Ions transiting biomembranes might pass readily from water through ion-specific membrane proteins if these protein channels provide environments similar to the aqueous solution hydration environment. Indeed, bulk aqueous solution is an important reference condition for the ion permeation process. Assessment of this hydration mimicry concept depends on understanding the hydration structure and free energies of metal ions in water in order to provide a comparison for the membrane channel environment. To refine these considerations, we review local hydration structures of ions in bulk water and the molecular quasi-chemical theory that provides hydration free energies. In doing so, we note some current views of ion binding to membrane channels and suggest new physical chemical calculations and experiments that might further clarify the hydration mimicry concept.
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Affiliation(s)
- Mangesh I Chaudhari
- Department of Computational Biology and Biophysics, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA;
| | - Juan M Vanegas
- Department of Computational Biology and Biophysics, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA; .,Current affiliation: Department of Physics, University of Vermont, Burlington, Vermont 05405, USA
| | - L R Pratt
- Department of Chemical and Biomolecular Engineering, Tulane University, New Orleans, Louisiana 70118, USA
| | - Ajay Muralidharan
- Department of Chemical and Biomolecular Engineering, Tulane University, New Orleans, Louisiana 70118, USA.,Current affiliation: Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA
| | - Susan B Rempe
- Department of Computational Biology and Biophysics, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA;
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Affiliation(s)
- Puja Banerjee
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore, India
| | - Biman Bagchi
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore, India
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Saha S, Roy S, Mathi P, Mondal JA. Polyatomic Iodine Species at the Air-Water Interface and Its Relevance to Atmospheric Iodine Chemistry: An HD-VSFG and Raman-MCR Study. J Phys Chem A 2019; 123:2924-2934. [PMID: 30830779 DOI: 10.1021/acs.jpca.9b00828] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Iodine plays a key role in tropospheric ozone destruction, atmospheric new particle formation, as well as growth. Air-water interface happens to be an important reaction site pertaining to such phenomena. However, except iodide (I-), the behavior of other iodine species, for example, triiodide (I3-) and iodate (IO3-, the most abundant iodine species in seawater) at the aqueous interface and their effect on the interfacial water are largely unknown. Using interface-specific vibrational spectroscopy (heterodyne-detected vibrational sum frequency generation), we recorded the imaginary-χ(2) spectra (Imχ(2); χ(2) is the second-order electric susceptibility in OH stretch region) of the air-water interface in the presence of IO3-, I3-, and I- (≤0.3 M) in the aqueous subphase. The Imχ(2) spectra reveal that the chaotropic I3- is the most surface-active anion among the iodine species studied and decreases the vibrational coupling and hydrogen-bonding of interfacial water. Interestingly, the IO3-, even being a kosmotrope, is quite prevalent in the interfacial region and preferentially orients the interfacial water as "H-down" (i.e., water dipole moment is pointed toward the bulk water). Mapping of the OH stretch response of ion-affected water at interface (i.e., ΔImχ(2) = Imχ(2)air-water-iodine salt - Imχ(2)air-water) with that in the hydration shell of the respective ion (hydration shell water response is obtained by Raman multivariate curve resolution spectroscopy) reveals a correlative link between the ion's influence on the interfacial water and their hydration shell structure. The distinct water structure of stronger as well as weaker H-bonding in the hydration shell of the polyatomic IO3- anion promotes the anion to stay at the interfacial region. Thus, the surface prevalence of the iodine species and their effect on the interfacial water are perceived to be crucial for the transfer of iodine from seawater to the atmosphere across the marine boundary layer and the chemistry of iodine at aqueous aerosol surface.
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Affiliation(s)
- Subhamoy Saha
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
| | - Subhadip Roy
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
| | - P Mathi
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
| | - Jahur A Mondal
- Radiation & Photochemistry Division , Bhabha Atomic Research Centre, Homi Bhabha National Institute , Trombay, Mumbai 400085 , India
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