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Selwyn JD, Vollmer SV. Whole genome assembly and annotation of the endangered Caribbean coral Acropora cervicornis. G3 (BETHESDA, MD.) 2023; 13:jkad232. [PMID: 37804092 PMCID: PMC10700113 DOI: 10.1093/g3journal/jkad232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 09/25/2023] [Accepted: 09/27/2023] [Indexed: 10/08/2023]
Abstract
Coral species in the genus Acropora are key ecological components of coral reefs worldwide and represent the most diverse genus of scleractinian corals. While key species of Indo-Pacific Acropora have annotated genomes, no annotated genome has been published for either of the two species of Caribbean Acropora. Here we present the first fully annotated genome of the endangered Caribbean staghorn coral, Acropora cervicornis. We assembled and annotated this genome using high-fidelity nanopore long-read sequencing with gene annotations validated with mRNA sequencing. The assembled genome size is 318 Mb, with 28,059 validated genes. Comparative genomic analyses with other Acropora revealed unique features in A. cervicornis, including contractions in immune pathways and expansions in signaling pathways. Phylogenetic analysis confirms previous findings showing that A. cervicornis diverged from Indo-Pacific relatives around 41 million years ago, with the closure of the western Tethys Sea, prior to the primary radiation of Indo-Pacific Acropora. This new A. cervicornis genome enriches our understanding of the speciose Acropora and addresses evolutionary inquiries concerning speciation and hybridization in this diverse clade.
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Affiliation(s)
- Jason D Selwyn
- Department of Marine and Environmental Sciences, Northeastern University, Nahant, MA 01908, USA
| | - Steven V Vollmer
- Department of Marine and Environmental Sciences, Northeastern University, Nahant, MA 01908, USA
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Abstract
Using the database Web of Science, a systematic search for literature on learning in Cnidaria, both non-associative and associative, was conducted. Cnidaria comprise hydras, box jellies, (true) jellyfish, corals, and sea anemones, a group of animals possessing diffuse networks of nerves known as nerve nets or neural nets. Being neighbors on the animal evolutionary tree to bilaterian animals, the vast collection of (mostly) bilaterally symmetric animals with brains ranging from tiny worms to giant whales, the cognitive capacities of Cnidaria inform the evolution of nervous systems and cognition in bilateria. I failed to find literature on learning in corals and box jellies. Habituation has been amply shown in hydras, jellyfish, and sea anemones, while sensitization has been studied in detail in sea anemones, including some neurobiological details in the release of nematocysts or poisoned darts for capturing prey. One well-controlled study found evidence for classical conditioning with shock in sea anemones, in addition to two other lesser-controlled demonstrations. The relevance of associative learning in sea anemones, embodied cognition, and representationsal issues when it comes to animals without central brains is discussed.
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Americus B, Lotan T, Bartholomew JL, Atkinson SD. A comparison of the structure and function of nematocysts in free-living and parasitic cnidarians (Myxozoa). Int J Parasitol 2020; 50:763-769. [PMID: 32707121 DOI: 10.1016/j.ijpara.2020.04.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 04/23/2020] [Accepted: 04/28/2020] [Indexed: 11/30/2022]
Abstract
Myxozoans are obligate parasites that have complex life cycles requiring alternate vertebrate and invertebrate hosts, with transmission via microscopic waterborne spores. Unusually for parasites, they belong to the phylum Cnidaria, alongside thousands of free-living corals, sea anemones, jellyfish and hydrozoans. Their cnidarian affinity is affirmed by genetic relatedness and the presence of nematocysts, historically called "polar capsules" in myxozoan research. Free-living cnidarians utilise this cellular weaponry for defence, predation and adhesion, whereas myxozoans use it to anchor to their hosts as the first step in infection. Despite the ~650 million years of divergence between free-living cnidarians and myxozoans, their nematocysts retain many shared morphological and molecular characters. Both are intra-cellular capsules with a single opening, and contain a coiled, evertable tubule. They are composed of unique nematocyst proteins, nematogalectin and minicollagen, and both likely contain an internal matrix of metal cations covalently bound to the anionic polymer poly-gamma glutamate. The rapid dissociation of this matrix and the resulting increase in internal osmotic potential is the driving force behind tubule elongation during discharge. In this review, we compare the structure and function of nematocysts in Myxozoa and free-living Cnidaria, incorporating recent molecular characterizations. We propose that terminology for homologous myxozoan structures be synonymized with those from other Cnidaria, hence, "polar capsule" as a taxon-specific nematocyst morphotype and "polar filament" as "tubule." Despite taxonomic divergence, genome reduction and an evolution to parasitism, myxozoans maintain nematocysts that are structurally and functionally homologous to those of their free-living cnidarian relatives.
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Affiliation(s)
- Benjamin Americus
- Department of Microbiology, Oregon State University, Corvallis, OR, USA
| | - Tamar Lotan
- Department of Marine Biology, The Leon H.Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | | | - Stephen D Atkinson
- Department of Microbiology, Oregon State University, Corvallis, OR, USA.
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Mahoney JL, Graugnard EM, Mire P, Watson GM. Evidence for involvement of TRPA1 in the detection of vibrations by hair bundle mechanoreceptors in sea anemones. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2011; 197:729-42. [PMID: 21394510 DOI: 10.1007/s00359-011-0636-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2010] [Revised: 02/15/2011] [Accepted: 02/15/2011] [Indexed: 10/18/2022]
Abstract
A homolog of TRPA1 was identified in the genome of the anemone, Nematostella vectensis (nv-TRPA1a), and predicted to possess six ankyrin repeat domains at the N-terminus and an ion channel domain near the C-terminus. Transmembrane segments of the ion channel domain are well conserved among several known TRPA1 polypeptides. Inhibitors of TRPA1 including ruthenium red decrease vibration-dependent discharge of nematocysts in N. vectensis and Haliplanella luciae. Activators of TRPA1 including URB-597 and polygodial increase nematocyst discharge in the absence of vibrations. Co-immunoprecipitation yields a band on SDS-PAGE gels at the predicted mass of the nv-TRPA1a polypeptide among other bands. Co-immunoprecipitation performed in the presence of antigenic peptide decreases the yield of this and several other polypeptides. In untreated controls, anti-nv-TRPA1a primarily labels the base of the hair bundle with some labeling also distributed along the length of stereocilia. Tissue immunolabeled in the presence of the antigenic peptide exhibits reduced labeling. Activating chemoreceptors for N-acetylated sugars induce immunolabel to distribute distally in stereocilia. In anemones, activating chemoreceptors for N-acetylated sugars induce hair bundles to elongate among several other structural and functional changes. Taken together, these results are consistent with the possibility that nv-TRPA1a participates in signal transduction of anemone hair bundles.
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Affiliation(s)
- Janna L Mahoney
- Department of Biology, University of Louisiana at Lafayette, USA
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Kallert DM, Ponader S, Eszterbauer E, El-Matbouli M, Haas W. Myxozoan transmission via actinospores: new insights into mechanisms and adaptations for host invasion. Parasitology 2007; 134:1741-50. [PMID: 17662162 DOI: 10.1017/s0031182007003290] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Various mechanisms that enable and improve transmission success of myxozoan actinospore stages towards fish hosts are described, based upon a combination of experimental data and functional analysis of morphological characters. For this purpose, laboratory-reared actinospores of Myxobolus cerebralis, Myxobolus parviformis, Henneguya nuesslini and Myxobolus pseudodispar were employed to exemplarily investigate aspects of host attachment and invasion. The process of polar filament discharge of M. cerebralis actinospores was analysed, showing that full discharge occurs in less than 10 msec. Additionally, a mechanism that rapidly contracts the discharged filament after discharge is described for the first time. Its purpose is most likely to bring the actinospore apex rapidly into intimate contact with the surface of the host. Unlike M. cerebralis, M. parviformis actinospores did not discharge polar filaments after mechanical and chemical stimulation, suggesting a different mode of triggering. For H. nuesslini actinospores, experimental results indicated that polar filament discharge is independent of external calcium-ion concentration but is influenced by osmolality. After attachment of an actinospore and prior to penetration into the host, an ensheathed unit ('endospore'), containing the sporoplasm, was emitted from the valves in a manner which varied from species to species. Experimentally induced sporoplasm emission was time-dependent and was found to be independent of polar filament discharge in H. nuesslini. Remarkably, it could be concluded that the sporoplasm is able to recognize host-stimuli while still within the intact spore. An updated summary of the sequential course of events during host recognition and invasion by actinospores is given.
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Affiliation(s)
- D M Kallert
- Institute of Zoology, Fish Biology and Fish Diseases, University of Munich, Kaulbachstrasse 37, D-80539 Munich, Germany.
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Abstract
The Cnidaria are simple organisms that have remarkable physiological features susceptible to microscopic investigation. As a group they produce cnidae, the most complex intracellular organelles known, form symbioses with a range of unicellular algae, contain mucocytes that account for a very substantial fraction of their body mass, and form complex skeletal structures of calcium carbonate. This review summarises contributions dealing with the distribution and localisation of metals of physiological and pathological importance within soft tissues and skeletons. Whilst there have been detailed studies of microscale metal distribution, using X-ray microanalysis, in the stinging organelles or cnidocysts and in mucocytes, other cells such as symbiotic algae and the epithelial cells have received little attention. In the skeleton-producing scleractinian corals X-ray microanalysis has provided tenuous, but persistent, evidence of Ca associated with intracellular vesicles or granules in the skeletogenic epithelium, even though the investigations were technically limited. These observations may be germane to the intriguing and intransigent problem of the mechanism of coral calcification. Metal localisation in coral skeleton at the resolution of annual growth rings has been concerned with the validity of Sr/Ca and Mg/Ca ratios as thermometers for paleoclimatic studies. It is not clear whether these ratios are influenced primarily by environmental or biological parameters. Microscale analyses by X-ray microanalysis and ion microprobe indicate a much greater variability of metal ratios which suggests biological control of metal deposition. New data are provided on the elemental composition, measured by X-ray microanalysis, of cells and cell compartments in the coral Galaxea fascicularis and zooxanthellae in the anemone Aiptasia sp. New information is also presented on changing Ca/Sr ratios at the skeletal interface in Galaxea fascicularis.
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Affiliation(s)
- Alan T Marshall
- Analytical Electron Microscopy Laboratory, Department of Zoology, La Trobe University, Bundoora (Melbourne), Victoria 3083, Australia.
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Watson GM, Mire P. A comparison of hair bundle mechanoreceptors in sea anemones and vertebrate systems. Curr Top Dev Biol 1999; 43:51-84. [PMID: 9891883 DOI: 10.1016/s0070-2153(08)60378-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Abstract
Hair bundle mechanoreceptors of the acousticolateralis system of vertebrates are similar to hair bundles found on tentacles of sea anemones, primitive marine invertebrates. In each case, hair bundles consist of actin-based stereocilia interconnected by extracellular linkages. Recently, considerable attention has been directed to one class of linkages called "tip links." Tip links interconnect the tip of one stereocilium to the adjacent, taller stereocilium. According to the currently favored hypothesis for signal transduction, tip links may be "gating springs" that gate cation channels opened during deflection of the hair bundle. To depolarize the membrane, deflections must be directed so as to induce strain on the tip links. Deflections in the opposite direction lead to hyperpolarization of the membrane. Hair cells adapt to prolonged deflection of hair bundles. Whereas in some vertebrates, adaptation is incomplete (i.e., the current fails to return to baseline), adaptation in anemones appears to be complete. Signal transduction is reversibly blocked by agents thought to interact with the transduction channel including streptomycin. In addition, signal transduction is abolished following exposure to agents thought to attack tip links including calcium-depleted buffers or elastase. Hair cells of lower vertebrates can be replaced by division and differentiation of supporting cells. In chickens, a repair system exists wherein tip links are replaced via a mechanism that does not involve protein synthesis. The repair mechanism of anemones involves synthesis of new proteins that may constitute replacement linkages and accessory proteins that attach the linkages to appropriate integral proteins.
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Affiliation(s)
- G M Watson
- Department of Biology, University of Southwestern Louisiana, Lafayette 70504, USA
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Kawaii S, Yamashita K, Nakai N, Fusetani N. Intracellular calcium transients during nematocyst discharge in actinulae of the hydroid,Tubularia mesembryanthemum. ACTA ACUST UNITED AC 1997. [DOI: 10.1002/(sici)1097-010x(19970801)278:5<299::aid-jez4>3.0.co;2-k] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Abstract
Sea anemones are marine invertebrates that use hair bundles to detect swimming movements of prey. Prey are captured by nematocysts (stinging capsules) that discharge into the prey. To further characterize anemone hair bundles and to compare hair bundles in anemones with hair bundles in vertebrates, we investigated fine structure and cytochemistry of anemone hair bundles. In addition, using a biological assay based on counting nematocysts discharged into vibrating test probes, we examined sensitivity of vibration detection to aminoglycoside antibiotics, Ca(2+)-free seawater, and amiloride. Like vertebrate hair bundles, anemone hair bundles are composed of stereocilia, possess lateral linkages between stereocilia whose preservation for transmission electron microscopy is enhanced by ruthenium red, and possess tip links morphologically similar to vertebrate tip links. Furthermore, vibration-dependent discharge of nematocysts is reversibly inhibited by 10(-4) M streptomycin and abolished by brief exposure to Ca(2+)-free seawater. However, unlike vertebrate hair bundles, anemone hair bundles appear to be insensitive to amiloride since vibration-dependent discharge of nematocysts is unaffected by up to mM amiloride. Thus, anemone hair bundles may serve as a useful model system for vertebrate hair bundles with the interesting feature of being insensitive to amiloride.
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Affiliation(s)
- G M Watson
- Department of Biology, University of Southwestern Louisiana, Lafayette 70504-2451, USA.
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