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Mackrill JJ, Shiels HA. Evolution of Excitation-Contraction Coupling. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2020; 1131:281-320. [DOI: 10.1007/978-3-030-12457-1_12] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Holland EB, Goldstone JV, Pessah IN, Whitehead A, Reid NM, Karchner SI, Hahn ME, Nacci DE, Clark BW, Stegeman JJ. Ryanodine receptor and FK506 binding protein 1 in the Atlantic killifish (Fundulus heteroclitus): A phylogenetic and population-based comparison. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2017; 192:105-115. [PMID: 28942070 PMCID: PMC5662517 DOI: 10.1016/j.aquatox.2017.09.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Revised: 09/01/2017] [Accepted: 09/02/2017] [Indexed: 05/12/2023]
Abstract
Non-dioxin-like polychlorinated biphenyls (NDL PCBs) activate ryanodine receptors (RyR), microsomal Ca2+ channels of broad significance. Teleost fish may be important models for NDL PCB neurotoxicity, and we used sequencing databases to characterize teleost RyR and FK506 binding protein 12 or 12.6kDa (genes FKBP1A; FKBP1B), which promote NDL PCB-triggered Ca2+ dysregulation. Particular focus was placed on describing genes in the Atlantic killifish (Fundulus heteroclitus) genome and searching available RNA-sequencing datasets for single nucleotide variants (SNV) between PCB tolerant killifish from New Bedford Harbor (NBH) versus sensitive killifish from Scorton Creek (SC), MA. Consistent with the teleost whole genome duplication (tWGD), killifish have six RyR genes, corresponding to a and b paralogs of mammalian RyR1, 2 and 3. The presence of six RyR genes was consistent in all teleosts investigated including zebrafish. Killifish have four FKBP1; one FKBP1b and three FKBP1a named FKBP1aa, FKBP1ab, likely from the tWGD and a single gene duplicate FKBP1a3 suggested to have arisen in Atherinomorphae. The RyR and FKBP1 genes displayed tissue and developmental stage-specific mRNA expression, and the previously uncharacterized RyR3, herein named RyR3b, and all FKBP1 genes were prominent in brain. We identified a SNV in RyR3b encoding missense mutation E1458D. In NBH killifish, 57% were heterozygous and 28% were homozygous for this SNV, whereas almost all SC killifish (94%) lacked the variant (n≥39 per population). The outlined sequence differences between mammalian and teleost RyR and FKBP1 together with outlined population differences in SNV frequency may contribute to our understanding of NDL PCB neurotoxicity.
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Affiliation(s)
- Erika B Holland
- Department of Biological Sciences, California State University of Long Beach, Long Beach, CA, USA; Department of Biology, Woods Hole Oceanographic Institution, Woods Hole MA, USA; Department of Molecular Biosciences, School of Veterinary Medicine, University of California Davis, Davis, CA, USA.
| | - Jared V Goldstone
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole MA, USA
| | - Isaac N Pessah
- Department of Molecular Biosciences, School of Veterinary Medicine, University of California Davis, Davis, CA, USA
| | - Andrew Whitehead
- Department of Environmental Toxicology, College of Agricultural and Environmental Sciences,University of California Davis, Davis, CA, USA
| | - Noah M Reid
- Department of Environmental Toxicology, College of Agricultural and Environmental Sciences,University of California Davis, Davis, CA, USA
| | - Sibel I Karchner
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole MA, USA
| | - Mark E Hahn
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole MA, USA
| | - Diane E Nacci
- Atlantic Ecology Division, Office of Research and Development, US Environmental Protection Agency, Narragansett, RI, USA
| | - Bryan W Clark
- Oak Ridge Institute for Science and Education at the United States Environmental Protection Agency, Office of Research and Development, Narragansett, RI, 02882, USA
| | - John J Stegeman
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole MA, USA
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Ding Z, Peng J, Liang Y, Yang C, Jiang G, Ren J, Zou Y. Evolution of Vertebrate Ryanodine Receptors Family in Relation to Functional Divergence and Conservation. Int Heart J 2017; 58:969-977. [DOI: 10.1536/ihj.16-558] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Zhiwen Ding
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
- Institute of Biomedical Sciences, Fudan University
| | - Juan Peng
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
| | - Yanyan Liang
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
- Department of Cardiology, The First People's Hospital, Shanghai Jiao Tong University School of Medicine
| | - Chunjie Yang
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
| | - Guoliang Jiang
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
| | - Jun Ren
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
- University of Wyoming College of Health Sciences
| | - Yunzeng Zou
- Shanghai Institute of Cardiovascular Diseases, Zhongshan Hospital, Fudan University
- Institute of Biomedical Sciences, Fudan University
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