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Pedroso de Lima F, Costa M, Sousa A, Proença MF. The Chromenopyridine Scaffold: A Privileged Platform in Drug Design. Molecules 2024; 29:3004. [PMID: 38998955 PMCID: PMC11243271 DOI: 10.3390/molecules29133004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 06/07/2024] [Accepted: 06/19/2024] [Indexed: 07/14/2024] Open
Abstract
The chromenopyridine scaffold represents an important class of heterocyclic compounds exhibiting a broad spectrum of biological properties. This review describes novel and efficient procedures for the synthesis of this scaffold. Herein, several methods were detailed and grouped according to their starting material (e.g., salicylaldehydes, chromones, chromanones and coumarins) and respective biological activity, when reported. This review highlights the potential of the reported synthetic strategies for preparing chromenopyridine derivatives with promising biological activity, paving the way for further developments in drug discovery.
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Affiliation(s)
- Fábio Pedroso de Lima
- Chemistry Centre, School of Sciences, University of Minho, Gualtar Campus, 4715-303 Braga, Portugal
- Centre for Textile Science and Technology (2C2T), University of Minho, Azurém Campus, 4800-058 Guimarães, Portugal
| | - Marta Costa
- Life and Health Sciences Research Institute (ICVS), University of Minho, Gualtar Campus, 4710-057 Braga, Portugal
- ICVS/3B's-PT Government Associate Laboratory, 4710-057 Braga/Guimarães, Portugal
| | - Ana Sousa
- Chemistry Centre, School of Sciences, University of Minho, Gualtar Campus, 4715-303 Braga, Portugal
- Life and Health Sciences Research Institute (ICVS), University of Minho, Gualtar Campus, 4710-057 Braga, Portugal
- ICVS/3B's-PT Government Associate Laboratory, 4710-057 Braga/Guimarães, Portugal
| | - Maria Fernanda Proença
- Chemistry Centre, School of Sciences, University of Minho, Gualtar Campus, 4715-303 Braga, Portugal
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Gadde S, Kleynhans A, Holien JK, Bhadbhade M, Nguyen PLD, Mittra R, Yu TT, Carter DR, Parker MW, Marshall GM, Cheung BB, Kumar N. Pyrimido[1,2-a]benzimidazoles as inhibitors of oncoproteins ubiquitin specific protease 5 and MYCN in the childhood cancer neuroblastoma. Bioorg Chem 2023; 136:106462. [PMID: 37060785 DOI: 10.1016/j.bioorg.2023.106462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 02/16/2023] [Accepted: 03/07/2023] [Indexed: 03/31/2023]
Abstract
The MYCN oncogene and histone deacetylases (HDACs) are key driver genes in the childhood cancer, neuroblastoma. We recently described a novel pyridobenzimidazole analogue, SE486-11, which enhanced the therapeutic effectiveness of HDAC inhibitors by increasing MYCN ubiquitination through effects on the deubiquitinase, ubiquitin-specific protease 5 (USP5). Here we describe the synthesis of a novel series of pyrimido[1,2-a]benzimidazole derivatives, and an evaluation of their cytopathic effects against non-malignant and human neuroblastoma cell lines. Among the tested analogues, 4-(4-methoxyphenyl)benzo[4,5]imidazo[1,2-a]pyrimidine (3a) was the most active compound against neuroblastoma cells (IC50 ≤ 2 µM), with low cytotoxicity (IC50 ≥ 15 µM) to normal cells. We show compound 3a bound to USP5 protein (Kd = 0.47 µM) in vitro and synergistically enhanced the efficacy of HDAC inhibitors against neuroblastoma cells. Moreover, knockdown of USP5 and MYCN in treated neuroblastoma cells showed that both USP5 and MYCN expression was necessary for the cytopathic activity of compound 3a, thus providing a clinically relevant rationale for further development of this of pyrimido[1,2-a]benzimidazole.
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Affiliation(s)
- Satyanarayana Gadde
- School of Chemistry, UNSW Sydney, NSW 2052, Australia; Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia
| | - Ane Kleynhans
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia
| | - Jessica K Holien
- School of Science, STEM College, RMIT University, Melbourne, VIC 3001, Australia
| | | | | | - Ritu Mittra
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia
| | - Tsz Tin Yu
- School of Chemistry, UNSW Sydney, NSW 2052, Australia
| | - Daniel R Carter
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia; School of Biomedical Engineering, University of Technology Sydney, Australia
| | - Michael W Parker
- School of Science, STEM College, RMIT University, Melbourne, VIC 3001, Australia
| | - Glenn M Marshall
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia; Kids Cancer Centre, Sydney Children's Hospital, Randwick, NSW, Australia.
| | - Belamy B Cheung
- Children's Cancer Institute Australia for Medical Research, Lowy Cancer Research Centre, UNSW Sydney, Kensington, NSW 2052, Australia; School of Clinical Medicine, UNSW Medicine & Health, UNSW Sydney, NSW, Australia.
| | - Naresh Kumar
- School of Chemistry, UNSW Sydney, NSW 2052, Australia.
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Synthesis, structure investigation, DFT analysis, optical, and photoelectrical properties of 9-bromo-3-hydroxychromeno[4,3-b]pyrazolo[4,3-e]pyridin-5(1H)-one (BHCPP). RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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A. Ibrahim M. Chemical Reactivity of 1H-Benzimidazol-2-ylacetonitrile and Dimedone toward Simple Condensates Derived from 3-Formylchromone. HETEROCYCLES 2022. [DOI: 10.3987/com-21-14588] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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5
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A. Ibrahim M, Badran AS. Novel Heteroannulated Chromeno[2,3-b]pyridines and Related Compounds Using 6-Methylchromone-3-carbonitrile. HETEROCYCLES 2022. [DOI: 10.3987/com-21-14607] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Fedotov VV, Rusinov VL, Ulomsky EN, Mukhin EM, Gorbunov EB, Chupakhin ON. Pyrimido[1,2- a]benzimidazoles: synthesis and perspective of their pharmacological use. Chem Heterocycl Compd (N Y) 2021; 57:383-409. [PMID: 34024913 PMCID: PMC8121645 DOI: 10.1007/s10593-021-02916-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 01/12/2021] [Indexed: 01/26/2023]
Abstract
The review presents data on the synthesis as well as studies of biological activity of new derivatives of pyrimido[1,2-a]benzimidazoles published over the last decade. The bibliography of the review includes 136 sources.
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Affiliation(s)
- Victor V. Fedotov
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
| | - Vladimir L. Rusinov
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
| | - Evgeny N. Ulomsky
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
| | - Evgeny M. Mukhin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
| | - Evgeny B. Gorbunov
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
| | - Oleg N. Chupakhin
- Ural Federal University named after the first President of Russia B. N. Yeltsin, 19 Mira St, Yekaterinburg, 620002 Russia
- Postovsky Institute of Organic Synthesis, Ural Branch of the Russian Academy of Sciences, 22/20 Sofyi Kovalevskoi St, Yekaterinburg, 620108 Russia
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Badran AS, H. Hashiem S, A. Ibrahim M, M. El-Gohary N, A. Allimony H. Synthetic Approaches for Heteroannulated Chromones Fused Various Heterocyclic Systems. HETEROCYCLES 2021. [DOI: 10.3987/rev-20-940] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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A. Ibrahim M, A. Alnamer Y. Synthetic Approaches for Construction of Novel 3-Heteroarylchromeno[2,3-b]pyridines and Annulated Chromenopyridopyrazolopyrimidines. HETEROCYCLES 2021. [DOI: 10.3987/com-21-14530] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Badran AS, Ahmed A, A. Ibrahim M. Chemical Transformation of Chromones into Coumarins. HETEROCYCLES 2021. [DOI: 10.3987/rev-21-962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Synthesis and evaluation of biological activity of novel chromeno[4,3-b]quinolin-6-one derivatives by SO3H-tryptamine supported on Fe3O4@SiO2@CPS as recyclable and bioactive magnetic nanocatalyst. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2020. [DOI: 10.1007/s13738-020-01990-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Ibrahim MA, Al‐Harbi SA, Allehyani ES. Synthesis and antimicrobial evaluation of the novel heteroannulated furo[3′,2′:6,7]chromeno[2,3‐b]pyridines: Part 1. J Heterocycl Chem 2020. [DOI: 10.1002/jhet.4082] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Magdy A. Ibrahim
- Department of Chemistry, Faculty of Education Ain Shams University Cairo Egypt
| | - Sami A. Al‐Harbi
- Department of Chemistry University College in Al‐Jamoum, Umm Al‐Qura University Makkah Saudi Arabia
| | - Esam S. Allehyani
- Department of Chemistry University College in Al‐Jamoum, Umm Al‐Qura University Makkah Saudi Arabia
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A. Ibrahim M, S. Allehyani E. Reactivity of 4,9-Dimethoxy-5-oxo-5H-furo[3,2-g]chromene-6-carbonitrile towards Some Nitrogen Nucleophilic Reagents. HETEROCYCLES 2020. [DOI: 10.3987/com-20-14347] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Hosseinzadegan S, Hazeri N, Maghsoodlou MT. Synthesis and evaluation of antimicrobial and antioxidant activity of novel 7‐Aryl‐6H,7H‐ benzo[f]chromeno[4,3‐b]chromen‐6‐one by MgO nanoparticle as green catalyst. J Heterocycl Chem 2019. [DOI: 10.1002/jhet.3796] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Sara Hosseinzadegan
- Department of Chemistry, Faculty of ScienceUniversity of Sistan & Baluchestan Zahedan The Islamic Republic of Iran
| | - Nourallah Hazeri
- Department of Chemistry, Faculty of ScienceUniversity of Sistan & Baluchestan Zahedan The Islamic Republic of Iran
| | - Malek T. Maghsoodlou
- Department of Chemistry, Faculty of ScienceUniversity of Sistan & Baluchestan Zahedan The Islamic Republic of Iran
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Bardasov IN, Alekseeva AU, Tafeenko VA, Ershov OV. Unexpected cascade transformations in the reaction of aromatic aldehydes with the malononitrile dimer. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2019.1665184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Ibrahim MA, El‐Kazak AM. Ring Opening and Recyclization Reactions with Chromone‐3‐carbonitrile. J Heterocycl Chem 2019. [DOI: 10.1002/jhet.3495] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Magdy A. Ibrahim
- Department of Chemistry, Faculty of EducationAin Shams University Roxy 11711 Cairo Egypt
| | - Azza M. El‐Kazak
- Department of Chemistry, Faculty of EducationAin Shams University Roxy 11711 Cairo Egypt
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Fischer G. Recent advances in 1,2,4-triazolo[1,5-a]pyrimidine chemistry. ADVANCES IN HETEROCYCLIC CHEMISTRY 2019. [DOI: 10.1016/bs.aihch.2018.10.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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17
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Heterocyclization reactions using malononitrile dimer (2-aminopropene-1,1,3-tricarbonitrile). Chem Heterocycl Compd (N Y) 2018. [DOI: 10.1007/s10593-018-2383-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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18
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Ibrahim MA, Badran A, Hashiem SH. Heteroannulated Coumarins and Chromones from Chemical Transformations of 6,8‐Dimethylchromone‐3‐carbonitrile. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3354] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Magdy A. Ibrahim
- Department of Chemistry, Faculty of EducationAin Shams University Roxy 11711 Cairo Egypt
| | - Al‐Shimaa Badran
- Department of Chemistry, Faculty of EducationAin Shams University Roxy 11711 Cairo Egypt
| | - Salsabeel H. Hashiem
- Department of Chemistry, Faculty of EducationAin Shams University Roxy 11711 Cairo Egypt
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Malononitrile dimer as a privileged reactant in design and skeletal diverse synthesis of heterocyclic motifs. Mol Divers 2018; 22:207-224. [DOI: 10.1007/s11030-017-9807-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Accepted: 12/20/2017] [Indexed: 01/02/2023]
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21
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A. Ibrahim M, M. El-Gohary N, Said S. Reactivity of 6-Methylchromone-3-carbonitrile Towards Some Nitrogen Nucleophilic Reagents. HETEROCYCLES 2018. [DOI: 10.3987/com-18-13874] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Wang M, Qian Y, Liu X, Wei P, Deng M, Wang L, Wu H, Zhu G. Multiple spectroscopic analyses reveal the fate and metabolism of sulfamide herbicide triafamone in agricultural environments. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 230:107-115. [PMID: 28649038 DOI: 10.1016/j.envpol.2017.06.046] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Revised: 05/20/2017] [Accepted: 06/08/2017] [Indexed: 05/22/2023]
Abstract
Triafamone, a sulfamide herbicide, has been extensively utilized for weed control in rice paddies in Asia. However, its fate and transformation in the environment have not been established. Through a rice paddy microcosm-based simulation trial combined with multiple spectroscopic analyses, we isolated and identified three novel metabolites of triafamone, including hydroxyl triafamone (HTA), hydroxyl triafamone glycoside (HTAG), and oxazolidinedione triafamone (OTA). When triafamone was applied to rice paddies at a concentration of 34.2 g active ingredient/ha, this was predominantly distributed in the paddy soil and water, and then rapidly dissipated in accordance with the first-order rate model, with half-lives of 4.3-11.0 days. As the main transformation pathway, triafamone was assimilated by the rice plants and was detoxified into HTAG, whereas the rest was reduced into HTA with subsequent formation of OTA. At the senescence stage, brown rice had incurred triafamone at a concentration of 0.0016 mg/kg, but the hazard quotient was <1, suggesting that long-term consumption of the triafamone-containing brown rice is relatively safe. The findings of the present study indicate that triafamone is actively metabolized in the agricultural environment, and elucidation of the link between environmental exposure to these triazine or oxazolidinedione moieties that contain metabolites and their potential impacts is warranted.
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Affiliation(s)
- Mengcen Wang
- Institute of Pesticide & Environmental Toxicology, Zhejiang University, Hangzhou, China
| | - Yuan Qian
- Institute of Pesticide & Environmental Toxicology, Zhejiang University, Hangzhou, China
| | - Xiaoyu Liu
- Institute of Pesticide & Environmental Toxicology, Zhejiang University, Hangzhou, China
| | - Peng Wei
- Institute of Pesticide & Environmental Toxicology, Zhejiang University, Hangzhou, China
| | - Man Deng
- Institute of Pesticide & Environmental Toxicology, Zhejiang University, Hangzhou, China
| | - Lei Wang
- Center for Drug Design, Academic Health Center, University of Minnesota, Minneapolis, USA
| | - Huiming Wu
- School of Agricultural and Food Science, Zhejiang A&F University, Hangzhou, China
| | - Guonian Zhu
- Institute of Pesticide & Environmental Toxicology, Zhejiang University, Hangzhou, China.
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Alekseeva AY, Bardasov IN, Mikhailov DL, Ershov OV. Synthesis of fused derivatives of 1,8-naphthyridine. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2017. [DOI: 10.1134/s1070428017080140] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Bardasov IN, Alekseeva AU, Yaschenko NN, Zhitar SV, Lyshchikov AN. One-pot synthesis of annulated 1,8-naphthyridines. HETEROCYCL COMMUN 2017. [DOI: 10.1515/hc-2017-0068] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
AbstractAnnulated 1,8-naphthyridines were synthesized by one-pot reaction of aromatic aldehyde, malononitrile dimer and enehydrazinoketone.
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A. Ibrahim M, M. El-Gohary N, Said S. Ring Opening Ring Closure Reactions with 3-Substituted Chromones under Nucleophilic Conditions. HETEROCYCLES 2015. [DOI: 10.3987/rev-15-824] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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