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Kawai J, Ota M, Ohki H, Toki T, Suzuki M, Shimada T, Matsui S, Inoue H, Sugihara C, Matsuhashi N, Matsui Y, Takaishi S, Nakayama K. Structure-Based Design and Synthesis of an Isozyme-Selective MTHFD2 Inhibitor with a Tricyclic Coumarin Scaffold. ACS Med Chem Lett 2019; 10:893-898. [PMID: 31223444 DOI: 10.1021/acsmedchemlett.9b00069] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Accepted: 05/20/2019] [Indexed: 12/31/2022] Open
Abstract
Methylenetetrahydrofolate dehydrogenase 2 (MTHFD2) plays a key role in one-carbon (1C) metabolism in human mitochondria, and its high expression correlates with poor survival of patients with various types of cancer. An isozyme-selective MTHFD2 inhibitor is highly attractive for potential use in cancer treatment. Herein, we disclose a novel isozyme-selective MTHFD2 inhibitor DS44960156, with a tricyclic coumarin scaffold, which was initially discovered via high-throughput screening (HTS) and improved using structure-based drug design (SBDD). DS44960156 would offer a good starting point for further optimization based on the following features: (1) unprecedented selectivity (>18-fold) for MTHFD2 over MTHFD1, (2) a molecular weight of less than 400, and (3) good ligand efficiency (LE).
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Affiliation(s)
- Junya Kawai
- R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan
| | - Masahiro Ota
- Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan
| | - Hitoshi Ohki
- R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan
| | - Tadashi Toki
- R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan
| | - Makoto Suzuki
- Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan
| | - Takashi Shimada
- Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan
| | - Satoshi Matsui
- R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan
| | - Hidekazu Inoue
- R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan
| | - Chika Sugihara
- Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan
| | - Norikazu Matsuhashi
- Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan
| | - Yumi Matsui
- Daiichi Sankyo RD Novare Co., Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan
| | - Sachiko Takaishi
- R&D Division, Daiichi Sankyo Co., Ltd., 1-2-58 Hiromachi, Shinagawa-ku, Tokyo 140-8710, Japan
| | - Kiyoshi Nakayama
- Daiichi Sankyo Co., Ltd., 3-5-1 Nihonbashi-honcho, Chuo-ku, Tokyo 103-8426, Japan
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Yu Y, Hu Y, Shao W, Huang J, Zuo Y, Huo Y, An L, Du J, Bu X. Synthesis of Multi-Functionalized Chromeno[2,3-c]pyrrol-9(2H)-ones: Investigation and Application of Baker-Venkataraman Rearrangement Involved Reactions Catalyzed by 4-(Dimethylamino)pyridine. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100435] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Bell TW, Cragg PJ, Firestone A, Kwok ADI, Liu J, Ludwig R, Sodoma A. Molecular Architecture. 2.1 Synthesis and Metal Complexation of Heptacyclic Terpyridyl Molecular Clefts. J Org Chem 1998. [DOI: 10.1021/jo9720041] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Thomas W. Bell
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
| | - Peter J. Cragg
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
| | - Albert Firestone
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
| | - Albert D.-I. Kwok
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
| | - Jia Liu
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
| | - Richard Ludwig
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
| | - Andrej Sodoma
- Department of Chemistry, University of Nevada, Reno, Nevada 89557-0020 and Department of Chemistry, State University of New York, Stony Brook, New York 11794-3400
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Gudmundsdottir AD, Lewis TJ, Randall LH, Scheffer JR, Rettig SJ, Trotter J, Wu CH. Geometric Requirements for Hydrogen Abstractability and 1,4-Biradical Reactivity in the Norrish/Yang Type II Reaction: Studies Based on the Solid State Photochemistry and X-ray Crystallography of Medium-Sized Ring and Macrocyclic Diketones. J Am Chem Soc 1996. [DOI: 10.1021/ja953420a] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anna D. Gudmundsdottir
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
| | - Thillairaj J. Lewis
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
| | - Leslie H. Randall
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
| | - John R. Scheffer
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
| | - Steven J. Rettig
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
| | - James Trotter
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
| | - Chung-Hsi Wu
- Contribution from the Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, Canada V6T 1Z1
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Kuznetsov VV, Prostakov NS. ?-Piperidone imines and enamies in organic synthesis (review). Chem Heterocycl Compd (N Y) 1994. [DOI: 10.1007/bf01164723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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