1
|
Zahran EM, Sayed AM, Abdelwahab MF, Albohy A, Abdulrazik BS, Ibrahim AM, Bringmann G, Abdelmohsen UR. Identifying the specific-targeted marine cerebrosides against SARS-CoV-2: an integrated computational approach. RSC Adv 2021; 11:36042-36059. [PMID: 35492761 PMCID: PMC9043436 DOI: 10.1039/d1ra07103c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 11/01/2021] [Indexed: 01/10/2023] Open
Abstract
Cerebrosides are a group of metabolites belonging to the glycosphingolipids class of natural products. So far, 167 cerebrosides, compounds 1-167, have been isolated from diverse marine organisms or microorganisms. The as yet smaller number of compounds that have been studied more in depth proves a potential against challenging diseases, such as cancer, a range of viral and bacterial diseases, as well as inflammation. This review provides a comprehensive summary on this so far under-explored class of compounds, their chemical structures, bioactivities, and their marine sources, with a full coverage to the end of 2020. Today, the global pandemic concern, COVID-19, has claimed millions of death cases around the world, making the development of anti-SARS-CoV-2 drugs urgently needed for such a battle. Accordingly, selected examples from all subclasses of cerebrosides were virtually screened for potential inhibition of SARS-CoV-2 proteins that are crucially involved in the viral-host interaction, viral replication, or in disease progression. The results highlight five cerebrosides that could preferentially bind to the hACE2 protein, with binding scores between -7.1 and -7.6 kcal mol-1 and with the docking poses determined underneath the first α1-helix of the protein. Moreover, the molecular interaction determined by molecular dynamic (MD) simulation revealed that renieroside C1 (60) is more conveniently involved in key hydrophobic interactions with the best stability, least deviation, least ΔG (-6.9 kcal mol-1) and an RMSD value of 3.6 Å. Thus, the structural insights assure better binding affinity and favorable molecular interaction of renieroside C1 (60) towards the hACE2 protein, which plays a crucial role in the biology and pathogenesis of SARS-CoV-2.
Collapse
Affiliation(s)
- Eman Maher Zahran
- Department of Pharmacognosy, Faculty of Pharmacy, Deraya University 61111 New Minia Egypt
| | - Ahmed M Sayed
- Department of Pharmacognosy, Faculty of Pharmacy, Nahda University 62513 Beni-Suef Egypt.,Department of Pharmacognosy, Faculty of Pharmacy, AlMaaqal University 61014 Basra Iraq
| | - Miada F Abdelwahab
- Department of Pharmacognosy, Faculty of Pharmacy, Minia University 61519 Minia Egypt +20-086-2369075 +20-086-2347759
| | - Amgad Albohy
- Department of Pharmaceutical Chemistry, The Faculty of Pharmacy, The British University in Egypt (BUE) Cairo 11837 Egypt
| | - Basma S Abdulrazik
- Department of Pharmaceutical Chemistry, The Faculty of Pharmacy, The British University in Egypt (BUE) Cairo 11837 Egypt
| | - Ayman M Ibrahim
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Deraya University 61111 New Minia Egypt
| | - Gerhard Bringmann
- Institute of Organic Chemistry, University of Würzburg Am Hubland 97074 Würzburg Germany +49-931-3184755 +49-931-3185323
| | - Usama Ramadan Abdelmohsen
- Department of Pharmacognosy, Faculty of Pharmacy, Deraya University 61111 New Minia Egypt.,Department of Pharmacognosy, Faculty of Pharmacy, Minia University 61519 Minia Egypt +20-086-2369075 +20-086-2347759
| |
Collapse
|
2
|
Vien LT, Hanh TTH, Quang TH, Cuong NX, Thao DT, Nam NH, Thung DC, Kiem PV, Minh CV. Polyhydroxylated steroid derivatives from the starfish Pentaceraster regulus. Nat Prod Res 2020; 36:2223-2229. [PMID: 32993368 DOI: 10.1080/14786419.2020.1826478] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
A new polyhydroxysteroid glycoside, regulusoside D (1), and a new polyhydroxylated steroid, (24S)-cholestane-3β,5,6β,8,15α,24-hexol (2), together with seven known compounds were purified from the starfish Pentaceraster regulus collected near Con Co Islands, Vietnam. The structure elucidation was confirmed by extensive analysis of their NMR and HR-QTOF mass experiments. Among isolated compounds, regulusoside D (1), (24S)-cholestane-3β,5,6β,8,15α,24-hexol (2), granulatoside A (4), 5α-cholestane-3β,6β,7α,15α,16β,26-hexol (6), 5α-cholestane-3β,6β,7α,8β,15α,16β,26-heptol (7) and 5α-cholestane-3β,6α,8,15α,16β,26-hexol (8) exhibited strong inhibitory effects on LPS-induced NO production in RAW264.7 cells with IC50 values of 9.13 ± 1.17, 9.19 ± 0.77, 8.63 ± 3.31, 12.61 ± 0.51, 14.83 ± 3.02 and 10.98 ± 1.22 µM, respectively.
Collapse
Affiliation(s)
- Le Thi Vien
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Tran Thi Hong Hanh
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Tran Hong Quang
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Nguyen Xuan Cuong
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Do Thi Thao
- Institute of Biotechnology, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Nguyen Hoai Nam
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Do Cong Thung
- Institute of Marine Environment and Resources, Vietnam Academy of Science and Technology, Haiphong, Vietnam
| | - Phan Van Kiem
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Chau Van Minh
- Institute of Marine Biochemistry, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| |
Collapse
|
3
|
Sulfated Steroidal Glycosides, Regulusosides S1 and S2, from the Tropical Starfish Pentaceraster regulus. Chem Nat Compd 2017. [DOI: 10.1007/s10600-017-1917-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
4
|
Kicha AA, Ivanchina NV, Malyarenko TV, Kalinovsky AI, Dmitrenok PS, Pislyagin EA, Yurchenko EA. Regulusosides A, B, and C, Three New Polyhydroxysteroid Glycosides from the Starfish Pentaceraster regulus. Nat Prod Commun 2016. [DOI: 10.1177/1934578x1601100912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Three new polyhydroxysteroid glycosides, regulusosides A-C (1-3) along with the previously known five steroid compounds (4-8) were isolated from the tropical starfish Pentaceraster regulus. The structures of compounds 1-3 were established by extensive NMR and ESI-MS techniques. New glycosides have the same aglycon, (24 S)-5α-cholestane-3β,5,6β,8,15α,24-hexol, and various disaccharide moieties: β-D-xylopyranosyl-(1→2)-3- O-methyl-α-L-arabinofuranosyl (1), β-D-xylopyranosyl-(1→2)-α-L-arabinofuranosyl (2), and 2- O-methyl-β-D-xylopyranosyl-(1→2)-3- O-methyl-α-L-arabinofuranosyl (3), attached at C-24 of the side chain. Compounds 1, 2 and 6 exhibit potential immunomodulatory properties, inducing intracellular ROS (reactive oxygen species) formation in the RAW 264.7 murine macrophage cells.
Collapse
Affiliation(s)
- Alla A. Kicha
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| | - Natalia V. Ivanchina
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| | - Timofey V. Malyarenko
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| | - Anatoly I. Kalinovsky
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| | - Pavel S. Dmitrenok
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| | - Evgeny A. Pislyagin
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| | - Ekaterina A. Yurchenko
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, Pr. 100 let Vladivostoku 159, Vladivostok, 690022, Russian Federation
| |
Collapse
|
5
|
Xu J, Guo S, Du L, Wang YM, Sugawara T, Hirata T, Xue CH. Isolation of cytotoxic glucoerebrosides and long-chain bases from sea cucumber Cucumaria frondosa using high speed counter-current chromatography. J Oleo Sci 2013; 62:133-42. [DOI: 10.5650/jos.62.133] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
|
6
|
Dong G, Xu T, Yang B, Lin X, Zhou X, Yang X, Liu Y. Chemical constituents and bioactivities of starfish. Chem Biodivers 2011; 8:740-91. [PMID: 21560228 DOI: 10.1002/cbdv.200900344] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Starfish have been the research topic in many chemical and pharmacological laboratories due to their complex secondary metabolites and diverse bioactivities. The aim of this review is to provide an up-to-date review on the chemistry and bioactivity of compounds isolated from all kinds of starfish to illustrate the chemodiversity and biological significance of these constituents, along with their geographical distribution where it is discernible.
Collapse
Affiliation(s)
- Guang Dong
- Key Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou, P. R. China
| | | | | | | | | | | | | |
Collapse
|
7
|
Řezanka T, Sigler K. Odd-numbered very-long-chain fatty acids from the microbial, animal and plant kingdoms. Prog Lipid Res 2009; 48:206-38. [DOI: 10.1016/j.plipres.2009.03.003] [Citation(s) in RCA: 128] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2009] [Revised: 03/17/2009] [Accepted: 03/23/2009] [Indexed: 10/21/2022]
|
8
|
|
9
|
Dembitsky VM. Astonishing diversity of natural surfactants: 4. Fatty acid amide glycosides, their analogs and derivatives. Lipids 2005; 40:641-60. [PMID: 16196415 DOI: 10.1007/s11745-005-1427-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
FA amide glycosides are of great interest, especially for the medicinal and pharmaceutical industries. These biologically active natural surfactants are good prospects for future chemical preparation of compounds useful as antibiotics, anticancer agents, or for industry. More than 200 unusual and interesting natural surfactants, including their chemical structures and biological activities, are described in this review article.
Collapse
Affiliation(s)
- Valery M Dembitsky
- Department of Organic Chemistry and School of Pharmacy, Hebrew University, Jerusalem, Israel.
| |
Collapse
|
10
|
Gao JM, Zhang AL, Chen H, Liu JK. Molecular species of ceramides from the ascomycete truffle Tuber indicum. Chem Phys Lipids 2005; 131:205-13. [PMID: 15351272 DOI: 10.1016/j.chemphyslip.2004.05.004] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2004] [Revised: 05/26/2004] [Accepted: 05/27/2004] [Indexed: 11/18/2022]
Abstract
The ceramide fractions were isolated from the chloroform/methanolic extractable of the fruiting bodies of Tuber indicum and separated into three kinds of molecular species TI-1, TI-2, and TI-3 by normal and reverse phase silica gel-column chromatography. By means of (1)H NMR and (13)C NMR spectroscopy, fast atom bombardment mass spectrometry (FAB-MS), and chemical degradation experiment, their component sphingoid base for TI-1 and TI-2 was uniformly (2S,3S,4R)-2-amino-1,3,4-octadecantriol, while the sphingoid of TI-3 was d-erythro-sphingosine, and their structures have been determined unequivocally to be (2S,2'R,3S,4R)-2-(2'-d-hydroxyalkanoylamino) octadecane-1,3,4-triol, the fatty acid composition of which consists of 2-hydroxydocosanoic, 2-hydroxytetracosanoic, and 2-hydroxytricosanoic acids (from major to minor); (2S,3S,4R)-2-(alkanoylamino)octadecane-1,3,4-triol, the fatty acid composition of which is unusual and consists of docosanoic, hexadecanoic, tricosanoic, octadecanoic and nonadecanoic acids (from major to minor); and (2S,3R,4E)-2-(alkanoylamino)-4-octadecene-1,3-diol, the component fatty acids of which were hexadecanoic (predominant) and octadecanoic acids, respectively.
Collapse
Affiliation(s)
- Jin-Ming Gao
- College of Life Sciences, Northwest Sci-Tech University of Agriculture and Forestry, Yangling 712100, Shaanxi, People's Republic of China.
| | | | | | | |
Collapse
|
11
|
Díaz de Vivar ME, Seldes AM, Maier MS. Two novel glucosylceramides from gonads and body walls of the Patagonian starfish Allostichaster inaequalis. Lipids 2002; 37:597-603. [PMID: 12120959 DOI: 10.1007/s11745-002-0938-7] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
From the water-insoluble lipid fraction of the chloroform/methanol/water extract of the gonads and body walls of the Patagonian starfish Allostichaster inaequalis, two new glucosylceramides (4 and 7) were isolated together with the known phalluside-1 (1) and two glucosylceramides (2 and 3) previously isolated from the starfish Cosmasterias lurida. The new compounds were characterized as (2S,3R,4E,8E,10E)-1-(beta-D-glucopyranosyloxy)-3-hydroxy-2-[(R)-2-hydroxy-15-tetracosenoyl] amino-4,8,10-octadecatriene (4) and (2S,3R,4E,15Z)-1-(beta-D-glucopyranosyloxy)-3-hydroxy-2-[(R)-2-hydroxyhexadecanoyl] amino-4,15-docosadiene (7) by means of spectroscopic and chemical methods.
Collapse
Affiliation(s)
- María E Díaz de Vivar
- Facultad de Ciencias Naturales (Sede Puerto Madryn), Universidad Nacional de la Patagonia San Juan Bosco, Chubut, Argentina
| | | | | |
Collapse
|
12
|
Shirota O, Nakanishi K, Berova N. Phytosphingosines — a facile synthesis and spectroscopic protocol for configurational assignment. Tetrahedron 1999. [DOI: 10.1016/s0040-4020(99)00839-x] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
13
|
Maier MS, Kuriss A, Seldes AM. Isolation and structure of glucosylceramides from the starfish Cosmasterias lurida. Lipids 1998; 33:825-7. [PMID: 9727615 DOI: 10.1007/s11745-998-0277-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
From the water-insoluble lipid fraction of the methylene chloride/methanol extract of the starfish Cosmasterias lurida, two new glucosylceramides together with a known glucosylceramide, ophidiacerebroside E, were isolated by chromatographic procedures and characterized by spectroscopic (1H and 13C nuclear magnetic resonance, mass spectrometry) methods. The new compounds were identified as (2S,3R,4E,8E,10E)-1-(beta-D-glucopyranosyloxy)-3 -hydroxy-2-[(R)-2-hydroxyheptadecanoyl)amino]-9-methyl-4,8,10-o ctadecatriene (3) and (2S,3R,4E,8E,10E)-1-(beta-D-glucopyranosyloxy)-3 -hydroxy-2-[(R)-2-hydroxyoctadecanoyl)amino]-9-methyl-4,8,10-oc tadecatriene (4).
Collapse
Affiliation(s)
- M S Maier
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Argentina.
| | | | | |
Collapse
|