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Kriegelstein M, Hojcsková J, Hroch M, Marek A. Direct Multi-Deuterium Labelling of Pirtobrutinib. J Labelled Comp Radiopharm 2024; 67:314-323. [PMID: 39004786 DOI: 10.1002/jlcr.4117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 06/03/2024] [Accepted: 06/29/2024] [Indexed: 07/16/2024]
Abstract
Herein, we demonstrate an efficient method for multi-deuterium labelling of pirtobrutinib-a Bruton's tyrosine kinase inhibitor recently approved by the FDA-using a straightforward hydrogen isotope exchange (HIE) reaction. A remarkably high level of deuterium incorporation was achieved using an excess of a Kerr-type iridium catalyst. The key factor in the significant deuterium labelling was the decision to employ a deuterium uniformly labelled solvent, chlorobenzene-d5, at an elevated temperature. Virtually, no d0-d3 species were detected, with only traces of d4-d5 isotopomers (< 5%) observable in the mass spectrum of pirtobrutinib-d8, fulfilling requirements for stable isotope-labelled internal standard. The labelled compound-mainly consisting of isotopomers d6-d9 at 82.4% of the total abundance-was isolated in a high yield (73%) and purity (99%). Noteworthy, fluorine group acting as a directing group was observed for the first time. Significant incorporation of deuterium in ortho-positions, exceeding 87%, was observed. Interestingly, chlorinated solvent used in the HIE reactions was non-specifically deuterated yielding up to 0.42 deuterium per chlorobenzene molecule even at an exceptionally low iridium catalyst loading of 4.17 × 10-2 mol%.
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Affiliation(s)
- Michal Kriegelstein
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Jana Hojcsková
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Miloš Hroch
- Department of Medical Biochemistry, Faculty of Medicine in Hradec Králové, Charles University, Hradec Králové, Czech Republic
| | - Aleš Marek
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Prague, Czech Republic
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Valero M, Derdau V. Highlights of aliphatic C(sp 3 )-H hydrogen isotope exchange reactions. J Labelled Comp Radiopharm 2020; 63:266-280. [PMID: 31278771 DOI: 10.1002/jlcr.3783] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 06/28/2019] [Accepted: 07/01/2019] [Indexed: 12/14/2022]
Abstract
This review summarizes the highlights of aliphatic C (sp3 )-H carbon hydrogen isotope exchange (HIE) methods developed in the last 10 years. In particular, new highly selective and reactive protocols in the areas of nanoparticle and metal-catalyzed homogeneous catalysis are reported.
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Affiliation(s)
- Mégane Valero
- R&D, Integrated Drug Discovery, Isotope Chemistry, Sanofi Germany, Frankfurt, Germany
| | - Volker Derdau
- R&D, Integrated Drug Discovery, Isotope Chemistry, Sanofi Germany, Frankfurt, Germany
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Kerr WJ, Knox GJ, Paterson LC. Recent advances in iridium(I) catalysis towards directed hydrogen isotope exchange. J Labelled Comp Radiopharm 2020; 63:281-295. [PMID: 31713876 DOI: 10.1002/jlcr.3812] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 10/11/2019] [Accepted: 10/16/2019] [Indexed: 01/03/2023]
Abstract
The initial discovery and establishment of a family of novel iridium catalysts possessing N-heterocyclic carbene units alongside bulky phosphine ligands allowed selected substrates to be labelled using deuterium or tritium gas at desirably low catalyst loadings via an ortho-directed C-H insertion process. Such a method has broad applicability and offers distinct advantages within the pharmaceutical industry, directly facilitating the ability to carefully monitor a potential drug molecule's biological fate. Over the past decade since these initial protocols were divulged, many additional advances have been made in terms of catalyst design and substrate scope. This review describes the broadened array of new iridium catalysts and associated protocols for direct and selective C-H activation and hydrogen isotope insertion within a number of new chemical entities of direct relevance to the pharmaceutical industry.
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Affiliation(s)
- William J Kerr
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, Scotland, UK
| | - Gary J Knox
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, Scotland, UK
| | - Laura C Paterson
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, G1 1XL, Scotland, UK
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Iridium Catalysts for Hydrogen Isotope Exchange. TOP ORGANOMETAL CHEM 2020. [DOI: 10.1007/3418_2020_58] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Shevchenko VP, Nagaev IY, Myasoedov NF. Effect of Processes Occurring in the Presence of Metal Catalysts on the Main Characteristics of the Hydrogen Isotope Labeled Organic Compounds Obtained. RADIOCHEMISTRY 2019. [DOI: 10.1134/s1066362219030019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Valero M, Burhop A, Jess K, Weck R, Tamm M, Atzrodt J, Derdau V. Evaluation of a P,N-ligated iridium(I) catalyst in hydrogen isotope exchange reactions of aryl and heteroaryl compounds. J Labelled Comp Radiopharm 2018; 61:380-385. [PMID: 29271003 DOI: 10.1002/jlcr.3595] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Revised: 12/08/2017] [Accepted: 12/08/2017] [Indexed: 02/06/2023]
Abstract
We have developed a novel and efficient iridium-catalyzed hydrogen isotope exchange reaction method with secondary and tertiary sulfonamides at ambient temperatures. Furthermore N-oxides and phosphonamides have been successfully applied in hydrogen isotope exchange reactions with moderate to excellent deuterium introduction.
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Affiliation(s)
- Mégane Valero
- R&D, Integrated Drug Discovery, Isotope Chemistry and Metabolite Synthesis, Sanofi, Frankfurt/Main, Germany
| | - Annina Burhop
- R&D, Integrated Drug Discovery, Isotope Chemistry and Metabolite Synthesis, Sanofi, Frankfurt/Main, Germany
| | - Kristof Jess
- Institut für Anorganische und Analytische Chemie, Technische Universität Braunschweig, Braunschweig, Germany
| | - Remo Weck
- R&D, Integrated Drug Discovery, Isotope Chemistry and Metabolite Synthesis, Sanofi, Frankfurt/Main, Germany
| | - Matthias Tamm
- Institut für Anorganische und Analytische Chemie, Technische Universität Braunschweig, Braunschweig, Germany
| | - Jens Atzrodt
- R&D, Integrated Drug Discovery, Isotope Chemistry and Metabolite Synthesis, Sanofi, Frankfurt/Main, Germany
| | - Volker Derdau
- R&D, Integrated Drug Discovery, Isotope Chemistry and Metabolite Synthesis, Sanofi, Frankfurt/Main, Germany
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Atzrodt J, Derdau V, Kerr WJ, Reid M. Methoden der C-H-Funktionalisierung für den Wasserstoffisotopenaustausch. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201708903] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry; Industriepark Höchst, G876 65926 Frankfurt Deutschland
| | - Volker Derdau
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry; Industriepark Höchst, G876 65926 Frankfurt Deutschland
| | - William J. Kerr
- Department of Pure and Applied Chemistry, WestCHEM; University of Strathclyde; 295 Cathedral Street Glasgow Scotland G1 1XL Großbritannien
| | - Marc Reid
- Department of Pure and Applied Chemistry, WestCHEM; University of Strathclyde; 295 Cathedral Street Glasgow Scotland G1 1XL Großbritannien
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Atzrodt J, Derdau V, Kerr WJ, Reid M. C-H Functionalisation for Hydrogen Isotope Exchange. Angew Chem Int Ed Engl 2018; 57:3022-3047. [PMID: 29024330 DOI: 10.1002/anie.201708903] [Citation(s) in RCA: 311] [Impact Index Per Article: 51.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Indexed: 11/06/2022]
Abstract
The various applications of hydrogen isotopes (deuterium, D, and tritium, T) in the physical and life sciences demand a range of methods for their installation in an array of molecular architectures. In this Review, we describe recent advances in synthetic C-H functionalisation for hydrogen isotope exchange.
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Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry, Industriepark Höchst, G876, 65926, Frankfurt, Germany
| | - Volker Derdau
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry, Industriepark Höchst, G876, 65926, Frankfurt, Germany
| | - William J Kerr
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, Scotland, G1 1XL, UK
| | - Marc Reid
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, Scotland, G1 1XL, UK
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Burhop A, Prohaska R, Weck R, Atzrodt J, Derdau V. Burgess iridium(I)-catalyst for selective hydrogen isotope exchange. J Labelled Comp Radiopharm 2017; 60:343-348. [PMID: 28406535 DOI: 10.1002/jlcr.3512] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 03/28/2017] [Accepted: 04/05/2017] [Indexed: 11/11/2022]
Abstract
We have evaluated the commercially available Burgess catalyst in hydrogen isotope exchange reactions with several substrates bearing different directing group functionalities and have obtained moderate to high (50%-97%D) deuterium incorporations. The broad applicability in hydrogen isotope exchange reactions makes the Burgess catalyst a possible alternative compared to other commercially available iridium(I)-catalysts.
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Affiliation(s)
- Annina Burhop
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Raphail Prohaska
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Remo Weck
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Jens Atzrodt
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
| | - Volker Derdau
- Integrated Drug Discovery, Med. Chem., Isotope Chemistry and Metabolite Synthesis, Sanofi-Aventis Deutschland GmbH, Frankfurt, Germany
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Cernak T, Dykstra KD, Tyagarajan S, Vachal P, Krska SW. The medicinal chemist's toolbox for late stage functionalization of drug-like molecules. Chem Soc Rev 2016; 45:546-76. [DOI: 10.1039/c5cs00628g] [Citation(s) in RCA: 976] [Impact Index Per Article: 122.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The advent of modern C–H functionalization chemistries has enabled medicinal chemists to consider a synthetic strategy, late stage functionalization (LSF), which utilizes the C–H bonds of drug leads as points of diversification for generating new analogs.
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Affiliation(s)
- Tim Cernak
- Merck Research Laboratories
- Discovery Chemistry - Automation & Capabilities Enhancement
- Boston
- USA
| | - Kevin D. Dykstra
- Merck Research Laboratories
- Discovery Chemistry - Automation & Capabilities Enhancement
- Rahway
- USA
| | - Sriram Tyagarajan
- Merck Research Laboratories
- Discovery Chemistry - Automation & Capabilities Enhancement
- Rahway
- USA
| | - Petr Vachal
- Merck Research Laboratories
- Discovery Chemistry - Automation & Capabilities Enhancement
- Rahway
- USA
| | - Shane W. Krska
- Merck Research Laboratories
- Discovery Chemistry - Automation & Capabilities Enhancement
- Rahway
- USA
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Shchepina NE, Avrorin VV, Badun GA, Vasyanin AN, Shurov SN, Agafonova IM. Investigation of Ion-Molecular Reactions of Nucleogenic Phenyl Cations with 1,4-Diazine Derivatives. Chem Heterocycl Compd (N Y) 2015. [DOI: 10.1007/s10593-014-1629-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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13
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Cochrane AR, Irvine S, Kerr WJ, Reid M, Andersson S, Nilsson GN. Application of neutral iridium(I) N-heterocyclic carbene complexes in ortho-directed hydrogen isotope exchange. J Labelled Comp Radiopharm 2013; 56:451-4. [PMID: 24285519 DOI: 10.1002/jlcr.3084] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2013] [Revised: 06/03/2013] [Accepted: 06/04/2013] [Indexed: 11/09/2022]
Abstract
Bench-stable complexes of the type [Ir(COD)(NHC)Cl] (NHC = N-heterocyclic carbene) have been investigated within the field of hydrogen isotope exchange. By employing a sterically encumbered NHC within such complexes and catalyst loadings of only 5 mol%, moderate to high deuterium incorporations were achieved across a range of aromatic ketones and nitrogen-based heterocycles. The simple and synthetically accessible catalysts reported herein present alternatives to phosphine-based species and increase the available labelling systems with respect to established iridium-based isotope exchange methodologies.
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Affiliation(s)
- Alison R Cochrane
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow, G1 1XL, UK
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