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Springer MS, Emerling CA, Gatesy J. Three Blind Moles: Molecular Evolutionary Insights on the Tempo and Mode of Convergent Eye Degeneration in Notoryctes typhlops (Southern Marsupial Mole) and Two Chrysochlorids (Golden Moles). Genes (Basel) 2023; 14:2018. [PMID: 38002961 PMCID: PMC10671557 DOI: 10.3390/genes14112018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 10/20/2023] [Accepted: 10/25/2023] [Indexed: 11/26/2023] Open
Abstract
Golden moles (Chrysochloridae) and marsupial moles (Notoryctidae) are textbook examples of convergent evolution. Both taxa are highly adapted to subterranean lifestyles and have powerful limbs for digging through the soil/sand, ears that are adapted for low-frequency hearing, vestigial eyes that are covered by skin and fur, and the absence of optic nerve connections between the eyes and the brain. The eyes of marsupial moles also lack a lens as well as retinal rods and cones. Two hypotheses have been proposed to account for the greater degeneracy of the eyes of marsupial moles than golden moles. First, marsupial moles may have had more time to adapt to their underground habitat than other moles. Second, the eyes of marsupial moles may have been rapidly and recently vestigialized to (1) reduce the injurious effects of sand getting into the eyes and (2) accommodate the enlargement of lacrimal glands that keep the nasal cavity moist and prevent the entry of sand into the nasal passages during burrowing. Here, we employ molecular evolutionary methods on DNA sequences for 38 eye genes, most of which are eye-specific, to investigate the timing of relaxed selection (=neutral evolution) for different groups of eye-specific genes that serve as proxies for distinct functional components of the eye (rod phototransduction, cone phototransduction, lens/cornea). Our taxon sampling included 12 afrothere species, of which two are golden moles (Amblysomus hottentotus, Chrysochloris asiatica), and 28 marsupial species including two individuals of the southern marsupial mole (Notoryctes typhlops). Most of the sequences were mined from databases, but we also provide new genome data for A. hottentotus and one of the two N. typhlops individuals. Even though the eyes of golden moles are less degenerate than the eyes of marsupial moles, there are more inactivating mutations (e.g., frameshift indels, premature stop codons) in their cone phototransduction and lens/cornea genes than in orthologous genes of the marsupial mole. We estimate that cone phototransduction recovery genes were inactivated first in each group, followed by lens/cornea genes and then cone phototransduction activation genes. All three groups of genes were inactivated earlier in golden moles than in marsupial moles. For the latter, we estimate that lens/cornea genes were inactivated ~17.8 million years ago (MYA) when stem notoryctids were burrowing in the soft soils of Australian rainforests. Selection on phototransduction activation genes was relaxed much later (5.38 MYA), during the early stages of Australia's aridification that produced coastal sand plains and eventually sand dunes. Unlike cone phototransduction activation genes, rod phototransduction activation genes are intact in both golden moles and one of the two individuals of N. typhlops. A second marsupial mole individual has just a single inactivating mutation in one of the rod phototransduction activation genes (PDE6B). One explanation for this result is that some rod phototransduction activation genes are pleiotropic and are expressed in extraocular tissues, possibly in conjunction with sperm thermotaxis.
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Affiliation(s)
- Mark S. Springer
- Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA 92521, USA
| | | | - John Gatesy
- Division of Vertebrate Zoology, American Museum of Natural History, New York, NY 10024, USA;
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2
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Goyens J, Baeckens S, Smith ESJ, Pozzi J, Mason MJ. Parallel evolution of semicircular canal form and sensitivity in subterranean mammals. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2022; 208:627-640. [PMID: 36251041 DOI: 10.1007/s00359-022-01578-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 09/19/2022] [Accepted: 09/21/2022] [Indexed: 12/14/2022]
Abstract
The vertebrate vestibular system is crucial for balance and navigation, and the evolution of its form and function in relation to species' lifestyle and mode of locomotion has been the focus of considerable recent study. Most research, however, has concentrated on aboveground mammals, with much less published on subterranean fauna. Here, we explored variation in anatomy and sensitivity of the semicircular canals among 91 mammal species, including both subterranean and non-subterranean representatives. Quantitative phylogenetically informed analyses showed significant widening of the canals relative to radius of curvature in subterranean species. A relative canal width above 0.166 indicates with 95% certainty that a species is subterranean. Fluid-structure interaction modelling predicted that canal widening leads to a substantial increase in canal sensitivity; a reasonably good estimation of the absolute sensitivity is possible based on the absolute internal canal width alone. In addition, phylogenetic comparative modelling and functional landscape exploration revealed repeated independent evolution of increased relative canal width and anterior canal sensitivity associated with the transition to a subterranean lifestyle, providing evidence of parallel adaptation. Our results suggest that living in dark, subterranean tunnels requires good balance and/or navigation skills which may be facilitated by more sensitive semicircular canals.
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Affiliation(s)
- Jana Goyens
- Laboratory of Functional Morphology, University of Antwerp, Antwerp, Belgium.
| | - Simon Baeckens
- Laboratory of Functional Morphology, University of Antwerp, Antwerp, Belgium.,Evolution and Optics of Nanostructures Lab, Department of Biology, Ghent University, Ghent, Belgium
| | | | - Jasmine Pozzi
- Laboratory of Functional Morphology, University of Antwerp, Antwerp, Belgium
| | - Matthew J Mason
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK
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Pleštilová L, Hrouzková E, Burda H, Meheretu Y, Šumbera R. Ear morphology in two root-rat species (genus Tachyoryctes) differing in the degree of fossoriality. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2021; 207:469-478. [PMID: 33956210 DOI: 10.1007/s00359-021-01489-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 04/20/2021] [Accepted: 04/24/2021] [Indexed: 11/30/2022]
Abstract
It is supposed that the subterranean lifestyle in mammals is reflected in ear morphology and tuning of hearing to low frequencies. We studied two root-rat species to see if their ear morphology reflects the difference in the amount of their surface activity. Whereas the more subterranean Tachyoryctes splendens possesses shorter pinnae as expected, it has smaller bullae compared to the more epigeic Tachyoryctes macrocephalus. The ratio between the eardrum and the stapedial footplate area and the ratio between the mallear and the incudal lever were lower in T. splendens (19.3 ± 0.3 and 1.9 ± 0.0, respectively) than in T. macrocephalus (21.8 ± 0.6 and 2.1 ± 0.1), probably reflecting the latter's higher surface activity. The cochlea in both species has 3.5 coils, yet the basilar membrane is longer in the smaller T. splendens (13.0 ± 0.5 versus 11.4 ± 0.7 mm), which indicates its wider hearing range and/or higher sensitivity (to some frequencies). In both root-rat species, the highest density of outer hair cells (OHC) was in the apical part of the cochlea, while the highest density of inner hair cells (IHC) was in its middle part. This OHC density pattern corresponds with good low-frequency hearing, whereas the IHC pattern suggests sensitivity to higher frequencies.
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Affiliation(s)
- Lucie Pleštilová
- Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská, 1760, 37005, České Budějovice, Czech Republic.
| | - Ema Hrouzková
- Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská, 1760, 37005, České Budějovice, Czech Republic
| | - Hynek Burda
- Department of Game Management and Wildlife Biology, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, 16521, Praha, Czech Republic
| | - Yonas Meheretu
- Department of Biology, College of Natural and Computational Sciences, University of Mekelle, Mekelle, Ethiopia
| | - Radim Šumbera
- Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská, 1760, 37005, České Budějovice, Czech Republic
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Nengovhela A, Braga J, Denys C, de Beer F, Tenailleau C, Taylor PJ. Associated tympanic bullar and cochlear hypertrophy define adaptations to true deserts in African gerbils and laminate-toothed rats (Muridae: Gerbillinae and Murinae). J Anat 2019; 234:179-192. [PMID: 30474264 PMCID: PMC6326829 DOI: 10.1111/joa.12906] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/11/2018] [Indexed: 10/27/2022] Open
Abstract
Hearing capabilities in desert rodents such as gerbils and heteromyids have been inferred from both anatomical and ecological aspects and tested with experiments and theoretical models. However, very few studies have focused on other desert-adapted species. In this study, a refined three-dimensional morphometric approach was used on three African rodent tribes (Otomyini, Taterillini and Gerbillini) to describe the cochlear and tympanic bullar morphology, and to explore the role of phylogeny, allometry and ecology to better understand the underlying mechanism of any observed trends of hypertrophy in the bulla and associated changes in the cochlea. As a result, desert-adapted species could be distinguished from mesic and semi-arid taxa by the gross cochlear dimensions, particularly the oval window, which is larger in desert species. Bullar and cochlear modifications between species could be explained by environment (bulla and oval window), phylogeny (cochlear curvature gradient) and/or allometry (cochlear relative length, oval window and bulla) with some exceptions. Based on their ear anatomy, we predict that Desmodillus auricularis and Parotomys brantsii should be sensitive to low-frequency sounds, with D. auricularis sensitive to high-frequency sounds, too. This study concludes that in both arid and semi-arid adapted laminate-toothed rats and gerbils there is bulla and associated cochlea hypertrophy, particularly in true desert species. Gerbils also show tightly coiled cochlea but the significance of this is debatable and may have nothing to do with adaptations to any specific acoustics in the desert environment.
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Affiliation(s)
- Aluwani Nengovhela
- Laboratoire d'Anthropologie Moléculaire et Imagerie de SynthèseUMR 5288CNRSUniversité de Toulouse (Paul Sabatier)ToulouseFrance
- South African Research Chair in Biodiversity and Change and Centre for Invasion BiologySchool of Mathematical and Natural SciencesUniversity of VendaThohoyandouSouth Africa
| | - José Braga
- Laboratoire d'Anthropologie Moléculaire et Imagerie de SynthèseUMR 5288CNRSUniversité de Toulouse (Paul Sabatier)ToulouseFrance
- Evolutionary Studies InstituteUniversity of the WitwatersrandJohannesburgSouth Africa
| | - Christiane Denys
- Institut de Systématique, Evolution, BiodiversitéUMR 7205, CNRS, MNHN, UPMC, EPHESorbonne UniversitésParisFrance
| | - Frikkie de Beer
- South African Nuclear Energy CorporationPelindabaNorth West ProvinceSouth Africa
| | - Christophe Tenailleau
- Centre Inter‐Universitaire de Recherche et d'Ingénierie des MatériauxUMR 5085CNRSUniversité de Toulouse (Paul Sabatier)ToulouseFrance
| | - Peter J. Taylor
- South African Research Chair in Biodiversity and Change and Centre for Invasion BiologySchool of Mathematical and Natural SciencesUniversity of VendaThohoyandouSouth Africa
- Core Team Member of the Centre of Invasion BiologyStellenbosch UniversityStellenboschSouth Africa
- School of Life SciencesUniversity of KwaZulu‐NatalDurbanSouth Africa
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Additional row of outer hair cells – The unique pattern of the Corti organ in a subterranean rodent, the Gansu zokor (Eospalax cansus). Mamm Biol 2019. [DOI: 10.1016/j.mambio.2018.11.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Mason MJ, Bennett NC, Pickford M. The middle and inner ears of the Palaeogene golden moleNamachloris: A comparison with extant species. J Morphol 2017; 279:375-395. [DOI: 10.1002/jmor.20779] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Revised: 10/24/2017] [Accepted: 11/08/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Matthew J. Mason
- University of Cambridge, Department of Physiology, Development & Neuroscience; Downing Street; Cambridge CB2 3EG United Kingdom
| | - Nigel C. Bennett
- Department of Zoology and Entomology; University of Pretoria; Pretoria 0002 South Africa
| | - Martin Pickford
- Sorbonne Universités, CR2P, UMR 7207 du CNRS, Département Histoire de la Terre, Muséum National d'Histoire Naturelle et Université Pierre et Marie Curie; France
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Koyabu D, Hosojima M, Endo H. Into the dark: patterns of middle ear adaptations in subterranean eulipotyphlan mammals. ROYAL SOCIETY OPEN SCIENCE 2017; 4:170608. [PMID: 28989763 PMCID: PMC5627103 DOI: 10.1098/rsos.170608] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Accepted: 08/21/2017] [Indexed: 05/06/2023]
Abstract
Evolution of the middle ear ossicles was a key innovation for mammals, enhancing the transmission of airborne sound. Radiation into various habitats from a terrestrial environment resulted in diversification of the auditory mechanisms among mammals. However, due to the paucity of phylogenetically controlled investigations, how middle ear traits have diversified with functional specialization remains unclear. In order to identify the respective patterns for various lifestyles and to gain insights into fossil forms, we employed a high-resolution tomography technique and compared the middle ear morphology of eulipotyphlan species (moles, shrews and hedgehogs), a group that has radiated into various environments, such as terrestrial, aquatic and subterranean habitats. Three-dimensional geometric morphometric analysis was conducted within a phylogenetically controlled framework. Quantitative shapes were found to strongly reflect the degree of subterranean lifestyle and weakly involve phylogeny. Our analyses demonstrate that subterranean adaptation should include a relatively shorter anterior process of the malleus, an enlarged incus, an enlarged stapes footplate and a reduction of the orbicular apophysis. These traits arguably allow improving low-frequency sound transmission at low frequencies and inhibiting the low-frequency noise which disturbs the subterranean animals in hearing airborne sounds.
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Affiliation(s)
- Daisuke Koyabu
- The University Museum, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, 113-0033 Tokyo, Japan
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Ear Structures of the Naked Mole-Rat, Heterocephalus glaber, and Its Relatives (Rodentia: Bathyergidae). PLoS One 2016; 11:e0167079. [PMID: 27926945 PMCID: PMC5142786 DOI: 10.1371/journal.pone.0167079] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Accepted: 11/08/2016] [Indexed: 11/21/2022] Open
Abstract
Although increasingly popular as a laboratory species, very little is known about the peripheral auditory system of the naked mole-rat, Heterocephalus glaber. In this study, middle and inner ears of naked mole-rats of a range of ages were examined using micro-computed tomography and dissection. The ears of five other bathyergid species (Bathyergus suillus, Cryptomys hottentotus, Fukomys micklemi, Georychus capensis and Heliophobius argenteocinereus) were examined for comparative purposes. The middle ears of bathyergids show features commonly found in other members of the Ctenohystrica rodent clade, including a fused malleus and incus, a synovial stapedio-vestibular articulation and the loss of the stapedius muscle. Heterocephalus deviates morphologically from the other bathyergids examined in that it has a more complex mastoid cavity structure, poorly-ossified processes of the malleus and incus, a ‘columelliform’ stapes and fewer cochlear turns. Bathyergids have semicircular canals with unusually wide diameters relative to their radii of curvature. How the lateral semicircular canal reaches the vestibule differs between species. Heterocephalus has much more limited high-frequency hearing than would be predicted from its small ear structures. The spongy bone forming its ossicular processes, the weak incudo-stapedial articulation, the columelliform stapes and (compared to other bathyergids) reduced cochlear coiling are all potentially degenerate features which might reflect a lack of selective pressure on its peripheral auditory system. Substantial intraspecific differences were found in certain middle and inner ear structures, which might also result from relaxed selective pressures. However, such interpretations must be treated with caution in the absence of experimental evidence.
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9
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Rozen-Rechels D, Peigné S, Germain D, Ladevèze S. Intraspecific morphological variation of the middle ear in the European badger,Meles meles(Carnivora: Mustelidae). Biol J Linn Soc Lond 2016. [DOI: 10.1111/bij.12800] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David Rozen-Rechels
- CR2P - UMR 7207 CNRS; MNHN; Univ Paris 06 57 rue Cuvier CP 38 F-75005 Paris France
- École normale supérieure; Formation Interuniversitaire de Biologie; 46 rue d'Ulm FR-75230 Paris Cedex 05 France
| | - Stéphane Peigné
- CR2P - UMR 7207 CNRS; MNHN; Univ Paris 06 57 rue Cuvier CP 38 F-75005 Paris France
| | - Damien Germain
- CR2P - UMR 7207 CNRS; MNHN; Univ Paris 06 57 rue Cuvier CP 38 F-75005 Paris France
| | - Sandrine Ladevèze
- CR2P - UMR 7207 CNRS; MNHN; Univ Paris 06 57 rue Cuvier CP 38 F-75005 Paris France
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Friscia A, Sanin GD, Lindsay WR, Day LB, Schlinger BA, Tan J, Fuxjager MJ. Adaptive evolution of a derived radius morphology in manakins (Aves, Pipridae) to support acrobatic display behavior. J Morphol 2016; 277:766-75. [PMID: 27027525 DOI: 10.1002/jmor.20534] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2016] [Revised: 02/18/2016] [Accepted: 02/27/2016] [Indexed: 01/07/2023]
Abstract
The morphology of the avian skeleton is often studied in the context of adaptations for powered flight. The effects of other evolutionary forces, such as sexual selection, on avian skeletal design are unclear, even though birds produce diverse behaviors that undoubtedly require a variety of osteological modifications. Here, we investigate this issue in a family of passerine birds called manakins (Pipridae), which have evolved physically unusual and elaborate courtship displays. We report that, in species within the genus Manacus, the shaft of the radius is heavily flattened and shows substantial solidification. Past work anecdotally notes this morphology and attributes it to the species' ability to hit their wings together above their heads to produce loud mechanical sonations. Our results show that this feature is unique to Manacus compared to the other species in our study, including a variety of taxa that produce other sonations through alternate wing mechanisms. At the same time, our data reveal striking similarities across species in total radius volume and solidification. Together, this suggests that supposedly adaptive alterations in radial morphology occur within a conserved framework of a set radius volume and solidness, which in turn is likely determined by natural selection. Further allometric analyses imply that the radius is less constrained by body size and the structural demands that underlie powered flight, compared to other forelimb bones that are mostly unmodified across taxa. These results are consistent with the idea that the radius is more susceptible to selective modification by sexual selection. Overall, this study provides some of the first insight into the osteological evolution of passerine birds, as well as the way in which opposing selective forces can shape skeletal design in these species. J. Morphol. 277:766-775, 2016. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Anthony Friscia
- Department of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, California, 90095
| | - Gloria D Sanin
- Department of Biology, Wake Forest University, Winston-Salem, North Carolina, 27109
| | - Willow R Lindsay
- Department of Biological and Environmental Sciences, Gothenburg University, Gothenburg, Sweden.,Department of Biology, University of Mississippi, University, Mississippi, 38677
| | - Lainy B Day
- Department of Biology, University of Mississippi, University, Mississippi, 38677
| | - Barney A Schlinger
- Department of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, California, 90095.,Laboratory of Neuroendocrinology, University of California, Los Angeles, California, 90095.,Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California, 90095.,Smithsonian Tropical Research Institute, Balboa, Ancon, Panama
| | - Josh Tan
- Department of Radiology, Wake Forest University School of Medicine, Winston-Salem, North Carolina, 27157
| | - Matthew J Fuxjager
- Department of Biology, Wake Forest University, Winston-Salem, North Carolina, 27109
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Pleštilová L, Hrouzková E, Burda H, Šumbera R. Does the morphology of the ear of the Chinese bamboo rat (Rhizomys sinensis) show "Subterranean" characteristics? J Morphol 2016; 277:575-84. [PMID: 26880690 DOI: 10.1002/jmor.20519] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Revised: 01/21/2016] [Accepted: 01/24/2016] [Indexed: 11/08/2022]
Abstract
In spite of the growing interest in rodents with subterranean activity in general and the spalacids (Spalacidae) in particular, little is known about the biology of most members of this clade, such as the Chinese bamboo rat (Rhizomys sinensis). Here, we analyzed the ear morphology of R. sinensis with respect to hearing specialization for subterranean or aboveground modes of communication. It is well-known that ecology and style of life of a particular species can be reflected in morphology of its ear, its hearing and vocalization, so we expect that such information could provide us insight into its style of life and its sensory environment. The ratio between the eardrum and stapedial footplate areas, which influences the efficiency of middle ear sound transmission, suggests low hearing sensitivity, as is typical for subterranean species. The cochlea had 3.25 coils and resembled species with good low frequency hearing typical for subterranean mammals. The length of the basilar membrane was 18.9 ± 0.8 mm and its width slowly increased towards the cochlear apex from 60 to 85 μm. The mean density of outer hair cells was 344 ± 22 and of inner hair cells 114 ± 7.3 per 1 mm length of the organ of Corti, and increased apically. These values (except for relatively low hair cell density) usually characterize ears specialized for low frequency hearing. There was no evidence for an acoustic fovea. Apart of low hair cell density which is common in aboveground animals, this species has also relatively large auricles, suggesting the importance of sound localization during surface activity. The ear of the Chinese bamboo rat thus contains features typical for both aboveground and subterranean mammals and suggests that this spalacid has fossorial habits combined with regular aboveground activity.
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Affiliation(s)
- Lucie Pleštilová
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, 37005, Czech Republic
| | - Ema Hrouzková
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, 37005, Czech Republic
| | - Hynek Burda
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, 37005, Czech Republic.,Department of General Zoology, Faculty of Biology, University of Duisburg-Essen, D-45117 Essen, Germany
| | - Radim Šumbera
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, 37005, Czech Republic
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