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Allemand R, López-Aguirre C, Abdul-Sater J, Khalid W, Lang MM, Macrì S, Di-Poï N, Daghfous G, Silcox MT. A landmarking protocol for geometric morphometric analysis of squamate endocasts. Anat Rec (Hoboken) 2023; 306:2425-2442. [PMID: 36654187 DOI: 10.1002/ar.25162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 12/29/2022] [Accepted: 01/03/2023] [Indexed: 01/20/2023]
Abstract
Landmark-based geometric morphometrics is widely used to study the morphology of the endocast, or internal mold of the braincase, and the diversity associated with this structure across vertebrates. Landmarks, as the basic unit of such methods, are intended to be points of correspondence, selected depending on the question at hand, whose proper definition is essential to guarantee robustness and reproducibility of results. In this study, 20 landmarks are defined to provide a framework to analyze the morphological variability in squamate endocasts. Ten species representing a cross-section of the diversity of Squamata from both phylogenetic and ecological (i.e., habitat) perspectives were considered, to select landmarks replicable throughout the entire clade, regardless of the degree of neuroanatomical resolution of the endocast. To assess the precision, accuracy, and repeatability of these newly defined landmarks, both intraobserver and interobserver error were investigated. Estimates of measurement error show that most of the landmarks established here are highly replicable, and preliminary results suggest that they capture aspects of endocast shape related to both phylogenetic and ecologic signals. This study provides a basis for further examinations of squamate endocast disparity using landmark-based geometric morphometrics.
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Affiliation(s)
- Rémi Allemand
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Camilo López-Aguirre
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Jade Abdul-Sater
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Waqqas Khalid
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Madlen M Lang
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Simone Macrì
- Institute of Biotechnology, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland
| | - Nicolas Di-Poï
- Institute of Biotechnology, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland
| | | | - Mary T Silcox
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
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Mennecart B, Dziomber L, Aiglstorfer M, Bibi F, DeMiguel D, Fujita M, Kubo MO, Laurens F, Meng J, Métais G, Müller B, Ríos M, Rössner GE, Sánchez IM, Schulz G, Wang S, Costeur L. Ruminant inner ear shape records 35 million years of neutral evolution. Nat Commun 2022; 13:7222. [PMID: 36473836 PMCID: PMC9726890 DOI: 10.1038/s41467-022-34656-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 11/02/2022] [Indexed: 12/12/2022] Open
Abstract
Extrinsic and intrinsic factors impact diversity. On deep-time scales, the extrinsic impact of climate and geology are crucial, but poorly understood. Here, we use the inner ear morphology of ruminant artiodactyls to test for a deep-time correlation between a low adaptive anatomical structure and both extrinsic and intrinsic variables. We apply geometric morphometric analyses in a phylogenetic frame to X-ray computed tomographic data from 191 ruminant species. Contrasting results across ruminant clades show that neutral evolutionary processes over time may strongly influence the evolution of inner ear morphology. Extant, ecologically diversified clades increase their evolutionary rate with decreasing Cenozoic global temperatures. Evolutionary rate peaks with the colonization of new continents. Simultaneously, ecologically restricted clades show declining or unchanged rates. These results suggest that both climate and paleogeography produced heterogeneous environments, which likely facilitated Cervidae and Bovidae diversification and exemplifies the effect of extrinsic and intrinsic factors on evolution in ruminants.
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Affiliation(s)
- Bastien Mennecart
- grid.482931.50000 0001 2337 4230Naturhistorisches Museum Basel, Augustinergasse 2, 4001 Basel, Switzerland
| | - Laura Dziomber
- grid.5734.50000 0001 0726 5157Institute of Plant Sciences, University of Bern, 3013 Bern, Switzerland ,grid.5734.50000 0001 0726 5157Oeschger Centre for Climate Change Research, University of Bern, 3012 Bern, Switzerland
| | - Manuela Aiglstorfer
- Naturhistorisches Museum Mainz / Landessammlung für Naturkunde Rheinland-Pfalz, Reichklarastraße 10, 55116 Mainz, Germany
| | - Faysal Bibi
- grid.422371.10000 0001 2293 9957Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, 10115 Germany
| | - Daniel DeMiguel
- grid.450869.60000 0004 1762 9673Fundación ARAID, Zaragoza, Spain ,grid.11205.370000 0001 2152 8769Departamento de Ciencias de la Tierra, Área de Paleontología / Instituto Universitario de Investigación en Ciencias Ambientales de Aragón (IUCA). Universidad de Zaragoza, Pedro Cerbuna 12, 50009 Zaragoza, Spain ,grid.7080.f0000 0001 2296 0625Institut Català de Palaeontologia Miquel Crusafont (ICP), Edifici Z, c/de les columnes s/n, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Masaki Fujita
- grid.410801.cNational Museum of Nature and Science, Tsukuba, Japan
| | - Mugino O. Kubo
- grid.26999.3d0000 0001 2151 536XDepartment of Natural Environmental Studies, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan
| | - Flavie Laurens
- Swiss National Data and Service Center for the Humanities, 4123 Allschwil, Switzerland
| | - Jin Meng
- grid.212340.60000000122985718American Museum of Natural History, 10024 New York; Earth and Environmental Sciences, Graduate Center, City University of New York, New York, NY 10016 USA
| | - Grégoire Métais
- grid.410350.30000 0001 2174 9334CR2P - Centre de Recherche en Paléontologie - Paris, UMR 7207, CNRS, MNHN, Sorbonne Université. Muséum national d’Histoire naturelle, CP38, 8 rue Buffon, 75005 Paris, France
| | - Bert Müller
- grid.6612.30000 0004 1937 0642Biomaterials Science Center, Department of Biomedical Engineering, University of Basel, Gewerbestrasse 14, 4123 Allschwil, Switzerland
| | - María Ríos
- grid.10772.330000000121511713Department of Earth Sciences, GeoBioTec, Nova School of Science and Technology, Universidade NOVA de Lisboa, Campus de Caparica, 2829-516 Caparica, Portugal
| | - Gertrud E. Rössner
- Staatliche Naturwissenschaftliche Sammlungen Bayerns - Bayerische Staatssammlung für Paläontologie und Geologie, Richard-Wagner-Strasse 10, 80333 Munich, Germany ,grid.5252.00000 0004 1936 973XDepartment für Geo- und Umweltwissenschaften, Paläontologie & Geobiologie, Ludwig-Maximilians-Universität München, Richard-Wagner-Strasse 10, 80333 Munich, Germany
| | - Israel M. Sánchez
- grid.7080.f0000 0001 2296 0625Institut Català de Palaeontologia Miquel Crusafont (ICP), Edifici Z, c/de les columnes s/n, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Georg Schulz
- grid.6612.30000 0004 1937 0642Biomaterials Science Center, Department of Biomedical Engineering, University of Basel, Gewerbestrasse 14, 4123 Allschwil, Switzerland ,grid.6612.30000 0004 1937 0642Micro- and Nanotomography Core Facility, Department of Biomedical Engineering, University of Basel Gewerbestrasse 14, 4123 Allschwil, Switzerland
| | - Shiqi Wang
- grid.9227.e0000000119573309Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, 142 Xizhimenwai Street, Beijing, 100044 China
| | - Loïc Costeur
- grid.482931.50000 0001 2337 4230Naturhistorisches Museum Basel, Augustinergasse 2, 4001 Basel, Switzerland
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Ferreira JD, Dozo MT, de Moura Bubadué J, Kerber L. Morphology and postnatal ontogeny of the cranial endocast and paranasal sinuses of capybara (Hydrochoerus hydrochaeris), the largest living rodent. J Morphol 2021; 283:66-90. [PMID: 34775628 DOI: 10.1002/jmor.21428] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2021] [Revised: 11/04/2021] [Accepted: 11/07/2021] [Indexed: 01/22/2023]
Abstract
Recent studies have analyzed and described the endocranial cavities of caviomorph rodents. However, no study has documented the changes in the morphology and relative size of such cavities during ontogeny. Expecting to contribute to the discussion of the endocranial spaces of extinct caviomorphs, we aimed to characterize the cranial endocast morphology and paranasal sinuses of the largest living rodent, Hydrochoerus hydrochaeris, by focusing on its ontogenetic growth patterns. We analyzed 12 specimens of different ontogenetic stages and provided a comparison with other cavioids. Our study demonstrates that the adult cranial endocast of H. hydrochaeris is characterized by olfactory bulbs with an irregular shape, showing an elongated olfactory tract without a clear circular fissure, a marked temporal region that makes the endocast with rhombus outline, and gyrencephaly. Some of these traits change as the brain grows. The cranial pneumatization is present in the frontal and lacrimal bones. We identified two recesses (frontal and lacrimal) and one sinus (frontal). These pneumatic cavities increase their volume as the cranium grows, covering the cranial region of the cranial endocast. The encephalization quotient was calculated for each specimen, demonstrating that it decreases as the individual grows, being much higher in younger specimens than in adults. Our results show that the ontogenetic stage can be a confounding factor when it comes to the general patterns of encephalization of extinct rodents, reinforcing the need for paleobiologists to take the age of the specimens into account in future studies on this subject to avoid age-related biases.
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Affiliation(s)
- José D Ferreira
- Programa de Pós-Graduação em Biodiversidade Animal, Centro de Ciências Naturais e Exatas, Universidade Federal de Santa Maria, Santa Maria, Brazil.,Centro de Apoio à Pesquisa Paleontológica da Quarta Colônia, Centro de Ciências Naturais e Exatas, Universidade Federal de Santa Maria, Santa Maria, Brazil
| | - Maria Teresa Dozo
- Instituto Patagónico de Geología y Paleontología, CCT CONICET-CENPAT, Puerto Madryn, Argentina
| | - Jamile de Moura Bubadué
- Laboratório de Ciências Ambientais, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Brazil
| | - Leonardo Kerber
- Programa de Pós-Graduação em Biodiversidade Animal, Centro de Ciências Naturais e Exatas, Universidade Federal de Santa Maria, Santa Maria, Brazil.,Centro de Apoio à Pesquisa Paleontológica da Quarta Colônia, Centro de Ciências Naturais e Exatas, Universidade Federal de Santa Maria, Santa Maria, Brazil.,Museu Paraense Emílio Goeldi, Coordenação de Ciências da Terra e Ecologia, Belém, Brazil
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