Assessment of rhizospheric culturable bacteria ofPhragmites australisandJuncus effususfrom polluted sites

Arsenic shapes the microbial community structures in tungsten mine waste rocks

Tungsten (W) is a critical material that is widely used in military applications, electronics, lighting technology, power engineering and the automotive and aerospace industries. In recent decades, overexploitation of W has generated large amounts of mine waste rocks, which generate elevated content of toxic elements and cause serious adverse effects on ecosystems and public health. Microorganisms are considered important players in toxic element migrations from waste rocks. However, the understanding of how the microbial community structure varies in W mine waste rocks and its key driving factors is still unknown. In this study, high-throughput sequencing methods were used to determine the microbial community profiles along a W content gradient in W mine waste rocks. We found that the microbial community structures showed clear differences across the different W levels in waste rocks. Notably, arsenic (As), instead of W and nutrients, was identified as the most important predictor influencing microbial diversity. Furthermore, our results also showed that As is the most important environmental factor that regulates the distribution patterns of ecological clusters and keystone ASVs. Importantly, we found that the dominant genera have been regulated by As and were widely involved in As biogeochemical cycling in waste rocks. Taken together, our results have provided useful information about the response of microbial communities to W mine waste rocks.

A Salt-Tolerant Streptomyces paradoxus D2-8 from Rhizosphere Soil of Phragmites communis Augments Soybean Tolerance to Soda Saline-Alkali Stress

Soil salinity and alkalization limit plant growth and agricultural productivity worldwide. The application of salt-tolerant plant growth-promoting rhizobacteria (PGPR) effectively improved plant tolerance to saline-alkali stress. To obtain the beneficial actinomyces resources with salt tolerance, thirteen isolates were isolated from rhizosphere saline and alkaline soil of Phragmites communis. Among these isolates, D2-8 was moderately halophilic to NaCl and showed 120 mmol soda saline-alkali solution tolerance. Moreover, the plant growth-promoting test demonstrated that D2-8 produced siderophore, IAA, 1-aminocyclopropane-1-carboxylate deaminase (ACCD), and organic acids. D2-8 showed 99.4% homology with the type strain Streptomyces paradoxus NBRC 14887T and shared the same branch, and, therefore, it was designated S. paradoxus D2-8. Its genome was sequenced to gain insight into the mechanism of growth-promoting and saline-alkali tolerance of D2-8. IAA and siderophore biosynthesis pathway, genes encoding ACC deaminase, together with six antibiotics biosynthesis gene clusters with antifungal or antibacterial activity, were identified. The compatible solute ectoine biosynthesis gene cluster, production, and uptake of choline and glycine betaine cluster in the D2-8 genome may contribute to the saline-alkali tolerance of the strain. Furthermore, D2-8 significantly promoted the seedling growth even under soda saline-alkali stress, and seed coating with D2-8 isolate increased by 5.88% of the soybean yield in the field. These results imply its significant potential to improve soybean soda saline-alkali tolerance and promote crop health in alkaline soil.

Microbial removal of vanadium (V) from groundwater by sawdust used as a sole carbon source

Bioremediation of vanadium (V) (V(V)) for polluted groundwater is an emerging topic globally. With this study, microbial removal of V(V) was investigated by sawdust of pine used as a sole carbon source. The removal efficiency of V(V) reached up to 90.3% with anaerobic sludge as inocula and sawdust as the carbon source in nutrient solution. Microbial removal of V(V) could be enhanced by adding medical stone and phosphate rock, from 53.2% up to 82.6% in real groundwater. Microbiological analysis revealed such microbes as Thauera accumulated, which could contribute to V(V) reduction. Such functional species as Bacteroidetes vadinHA17 norank and Anaerolineaceae norank helped degradation of sawdust. In column experiments with domesticated sludge or indigenous microbes from soils, microbial V(V) removal efficiencies (on 26 d) with sawdust were around 58.7% (BS), 54.8% (BP) and 38.4% (BU), respectively. The study can offer a potential approach to microbially removing V(V) for contaminated groundwater and even for disposal of agricultural and forestry wastes.

Plant growth-promoting rhizobacteria (PGPR) improve the growth and nutrient use efficiency in maize (Zea mays L.) under water deficit conditions

Drought is one of the major abiotic stresses that affects crop yield worldwide. An eco-friendly tool that can broadly improve plants' tolerance to water stress is bioionocula comprising plant growth-promoting rhizobacteria (PGPR). In this study, the effect of two PGPR Cupriavidus necator 1C2 (B1) and Pseudomonas fluorescens S3X (B2), singly and/or co-inoculated at two inocula sizes (S1 - 3 × 10³ cells g^-1 dry weight (dw) soil and S2 - 3 × 10⁶ cells g^-1 dw soil), on growth, nutrient uptake, and use efficiency was assessed in maize (Zea mays L.) plants grown at three levels of irrigation (80% of water holding capacity (WHC) - well-watered, 60% of WHC - moderate water deficit stress, and 40% of WHC - severe water deficit stress) in a greenhouse experiment. The impact of water deficit and bioinoculants on soil microbial activity (fluorescein diacetate hydrolysis) was also evaluated. Moderate and severe water deficit negatively affected soil microbial activity, as well as, maize growth, by reducing plants' shoot biomass and increasing root/shoot ratio at 60 and 40% of WHC. Bioinoculants mitigated the negative effects on shoot biomass, especially when PGPR were co-inoculated, increasing up to 89% the aerial biomass of plants exposed to moderate water deficit. Bioinoculation also increased nitrogen (N) and phosphorous (P) use efficiency, which may have led to higher maize growth under water deficit conditions. The size of the inocula applied had marginal influence on biometric and nutrient parameters, although the higher concentration of the mixture of PGPR was the most effective in improving shoot biomass under moderate water deficit. This study shows that rhizobacterial strains are able to increase nutrient use efficiency and to alleviate water stress effects in crops with high water demands and have potential applications to keep up with productivity in water stress scenarios.

The applicability of gene sequencing and MALDI-TOF to identify less common gram-negative rods (Advenella, Castellaniella, Kaistia, Pusillimonas and Sphingobacterium) from environmental isolates

Our aim was to identify less common non-fermenting gram-negative rods during the bioremediation process. Five genera were found: Advenella, Castellaniella, Kaistia, Pusillimonas and Sphingobacterium, for a total of 15 isolates. Therefore, we evaluated the applicability of four methods currently available for bacteria identification: (1) conventional biochemical methods, (2) the VITEK^®-2 system, (3) MALDI-TOF mass spectrometry and (4) 16S rRNA gene sequencing. The biochemical methods and the VITEK^®-2 system were reliable only for the Sphingobacterium isolate and solely at the genus level. Both MALDI-TOF mass spectrometry platforms (Bruker and VITEK^® MS) did not achieve reliable identification results for any of these genera. 16S rRNA gene sequencing identified eight isolates to the species level but not to the subspecies level, when applicable. The remaining seven isolates were reliably identified through 16S rRNA gene sequencing to the genus level only. Our findings suggest that the detection and identification of less common genera (and species) that appeared at certain moments during the bioremediation process can be a challenge to microbiologists considering the most used techniques. In addition, more studies are required to confirm our results.