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Tavoosi N, Akhavan Sepahi A, Kiarostami V, Amoozegar MA. Arsenite tolerance and removal potential of the indigenous halophilic bacterium, Halomonas elongata SEK2. Biometals 2024:10.1007/s10534-024-00612-2. [PMID: 38822902 DOI: 10.1007/s10534-024-00612-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 05/17/2024] [Indexed: 06/03/2024]
Abstract
The indigenous halophilic arsenite-resistant bacterium Halomonas elongata strain SEK2 isolated from the high saline soil of Malek Mohammad hole, Lut Desert, Iran, could tolerate high concentrations of arsenate (As5+) and arsenite (As3+) up to 800 and 40 mM in the SW-10 agar medium, respectively. The isolated strain was able to tolerate considerable concentrations of other toxic heavy metals and oxyanions, including Cadmium (Cd2+), Chromate (Cr6+), lead (Pb2+), and selenite (Se4+), regarding the high salinity of the culture media (with a total salt concentration of 10% (w/v)), the tolerance potential of the isolate SEK2 was unprecedented. The bioremoval potential of the isolate SEK2 was examined through the Silver diethyldithiocarbamate (SDDC) method and demonstrated that the strain SEK2 could remove 60% of arsenite from arsenite-containing growth medium after 48 h of incubation without converting it to arsenate. The arsenite adsorption or uptake by the halophilic bacterium was investigated and substantiated through Fourier-transform infrared spectroscopy (FTIR), Scanning Electron Microscope (SEM), and Energy Dispersive X-ray (EDX) analyses. Furthermore, Transmission electron microscope (TEM) analysis revealed ultra-structural alterations in the presence of arsenite that could be attributed to intracellular accumulation of arsenite by the bacterial cell. Genome sequencing analysis revealed the presence of arsenite resistance as well as other heavy metals/oxyanion resistance genes in the genome of this bacterial strain. Therefore, Halomonas elongata strain SEK2 was identified as an arsenite-resistant halophilic bacterium for the first time that could be used for arsenite bioremediation in saline arsenite-polluted environments.
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Affiliation(s)
- Nazanin Tavoosi
- Department of Microbiology, Faculty of Biological Sciences, North Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Abbas Akhavan Sepahi
- Department of Microbiology, Faculty of Biological Sciences, North Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Vahid Kiarostami
- Faculty of Chemistry, North Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Mohammad Ali Amoozegar
- Extremophiles Laboratory, Department of Microbiology, School of Biology and Center of Excellence in Phylogeny of Living Organisms, College of Science, University of Tehran, Tehran, Iran.
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Bushra R, Uzair B, Ali A, Manzoor S, Abbas S, Ahmed I. Draft genome sequence of a halotolerant plant growth-promoting bacterium Pseudarthrobacter oxydans NCCP-2145 isolated from rhizospheric soil of mangrove plant Avicennia marina. ELECTRON J BIOTECHN 2023; 66:52-59. [DOI: 10.1016/j.ejbt.2023.08.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2024] Open
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Xu M, Huang XH, Gao P, Chen HQ, Yuan Q, Zhu YX, Shen XX, Zhang YY, Xue ZX. Insight into the spatiotemporal distribution of antibiotic resistance genes in estuarine sediments during long-term ecological restoration. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 335:117472. [PMID: 36827800 DOI: 10.1016/j.jenvman.2023.117472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 01/16/2023] [Accepted: 02/05/2023] [Indexed: 06/18/2023]
Abstract
In this study, we aimed to investigate the long-term spatiotemporal changes in hydrodynamics, antibiotics, nine typical subtypes of antibiotic resistance genes (ARGs), class 1 integron gene (intI1), and microbial communities in the sediments of a semi-enclosed estuary during ecological restoration with four treatment stages (influent (#1), effluent of the biological treatment area (#2), oxic area (#3), and plant treatment area (#4)). Ecological restoration of the estuary reduced common pollutants (nitrogen and phosphorus) in the water, whereas variations in ARGs showed noticeable seasonal and spatial features. The absolute abundance of ARGs at sampling site #2 considerably increased in autumn and winter, while it significantly increased at sampling site #3 in spring and summer. The strong intervention of biological treatment (from #1 to #2) and aerators (from #2 to #3) in the estuary substantially affected the distribution of ARGs and dominant antibiotic-resistant bacteria (ARB). The dominant ARB (Thiobacillus) in estuarine sediments may have low abundance but important dissemination roles. Meanwhile, redundancy and network analysis revealed that the microbial communities and intl1 were key factors related to ARG dissemination, which was affected by spatial and seasonal ecological restoration. A positive correlation between low flow velocity and certain ARGs (tetM, tetW, tetA, sul2, and ermC) was observed, implying that flow optimization should also be considered in future ecological restoration to remediate ARGs. Furthermore, the absolute abundance of ARGs can be utilized as an index to evaluate the removal capacity of ARGs by estuarine restoration.
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Affiliation(s)
- Ming Xu
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Xing-Hao Huang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Peng Gao
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Hao-Qiang Chen
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Quan Yuan
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Yun-Xiang Zhu
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Xiao-Xiao Shen
- State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing, 210098, China.
| | - Yan-Yan Zhang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China
| | - Zhao-Xia Xue
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing, 210098, China; College of Environment, Hohai University, Nanjing, 210098, China.
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Mu M, Yang F, Han B, Ding Y, Zhang K. Insights into the panorama of antibiotic resistome in cropland soils amended with vermicompost in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 868:161658. [PMID: 36649763 DOI: 10.1016/j.scitotenv.2023.161658] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 01/12/2023] [Accepted: 01/12/2023] [Indexed: 06/17/2023]
Abstract
The accumulation and propagation of animal-derived antibiotic resistance genes (ARGs) pose great challenges to agricultural ecosystems. Vermicompost has drawn global attention as a new type of eco-friendly organic fertilizer. However, the effects of vermicompost application on ARGs in soil are still unclear. Here, we conducted a nationwide large-scale survey to explore the impact of vermicompost application on ARGs and the host in cropland fields as well as their regional differences. Vermicompost application was found to alter the pattern of ARGs, reduce the transfer of mobile genetic elements (MGEs), and mitigate the proliferation of high-risk bla-ARGs in soil. Regional differences in vermicompost-derived ARGs were observed in croplands, with less ARG-spreading risk in brown and yellow-brown soils. Total ARG abundance was present at the lowest level (1.24 × 105-3.57 × 107 copies/g) in vermicomposted soil compared with the croplands using animal manure (e.g., swine, chicken, and cow manure). Furthermore, vermicompost application increased the abundance of beneficial bacteria like Ilumatobacter and Gaiella, while reducing the abundance of Acidobacteria and Pseudarthrobacter. Network analysis showed that vermicompost altered ARG host bacteria and reduced the numbers of potential ARG hosts in soil. Microbes played a key role in ARG changes in vermicompost-treated soil. Our study provides valuable insight into the response of soil ARGs and the host to vermicompost in cropland ecosystem, and also provides a novel pathway for controlling the propagation of animal-derived ARGs.
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Affiliation(s)
- Meirui Mu
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, PR China
| | - Fengxia Yang
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, PR China.
| | - Bingjun Han
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, PR China
| | - Yongzhen Ding
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, PR China
| | - Keqiang Zhang
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, PR China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, PR China.
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Singh S, Kumar V, Gupta P, Ray M. The trafficking of Hg II by alleviating its toxicity via Citrobacter sp. IITISM25 in batch and pilot-scale investigation. JOURNAL OF HAZARDOUS MATERIALS 2022; 433:128711. [PMID: 35395524 DOI: 10.1016/j.jhazmat.2022.128711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Revised: 03/10/2022] [Accepted: 03/13/2022] [Indexed: 06/14/2023]
Abstract
The study aims to see how effective the Citrobacter species strain is in removing HgII under stressful conditions. For this, a response surface methodology was chosen to optimized pH, temperature, and biomass for effective biotransformation of HgII. The optimized value for pH, temperature, and biomass were 6.5, 30 °C, and 2 mg/l with 89% HgII removal potential. TEM-EDX showed accumulated mercury onto the bacterial surface. Pot study was conducted to check the potentiality of this strain in alleviating the toxicity in Solanum lycopersicum L. under different concentrations of mercury. The enhancement in antioxidative enzymes, as well as mercury accumulation, was observed in test plants inoculated with IITISM25. Obtained result showed a greater accumulation of mercury in the root system than that of the shoot system due to poor translocation. Moreover, mercury reductase enzyme synthesis was also boosted by the addition of β-mercaptoethanol and L-cysteine. The optimized condition for maximum enzyme synthesis was at pH 7.5 and temperature 30 °C with Km = 48.07 μmol and Vmax = 9.75 μmol/min. Thus, we can say that Citrobacter species strain IITISM25 can be effectively applied in remediation of HgII stress condition as well as promotion of Solanum lycopersicum L growth under stress conditions as a promising host.
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Affiliation(s)
- Shalini Singh
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad 826 004, Jharkhand, India
| | - Vipin Kumar
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad 826 004, Jharkhand, India.
| | - Pratishtha Gupta
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad 826 004, Jharkhand, India
| | - Madhurya Ray
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad 826 004, Jharkhand, India
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Köktürk M, Atalar MN, Odunkıran A, Bulut M, Alwazeer D. Evaluation of the hydrogen-rich water alleviation potential on mercury toxicity in earthworms using ATR-FTIR and LC-ESI-MS/MS spectroscopy. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:19642-19656. [PMID: 34718956 DOI: 10.1007/s11356-021-17230-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 10/22/2021] [Indexed: 06/13/2023]
Abstract
The toxic effects of mercury in earthworms and the potential alleviation effect of hydrogen-rich water (HRW) using ATR-FTIR and LC-MS analysis methods were investigated. Different concentrations of mercury chloride (H1: 5 µg/mL, H2: 10 µg/mL, H3: 20 µg/mL, H4: 40 µg/mL, and C1: control) and mercury chloride prepared in hydrogen-rich water (H5: 5 µg/mL, H6: 10 µg/mL, H7: 20 µg/mL, H8: 40 µg/mL, and C2: control) were injected into earthworms. The changes and reductions in some bands representing proteins, lipids, and polysaccharides (3280 cm-1, 2922 cm-1, 2855 cm-1, 1170 cm-1, and 1047 cm-1) showed that protective effects could occur in groups prepared with hydrogen-rich water. In the FTIR results, it was found that these bands in the H3 group were more affected and decreased by the influence of mercury on earthworms than the H7 group prepared with hydrogen. LC-MS analysis showed that the changes in some ions of the highest dose groups (H4 and H8) were different, and mercury caused oxidative DNA damage in earthworms. When the high-level application groups of mercury, i.e., H4 and H8 were compared with the controls, the ion exchange ([M + H] + ; m/z 283.1) representing the 8-Oxo-dG level in earthworms was higher in the H4 group than the H8 group. This reveals that HRW exhibited the potential ability to alleviate the toxic effects of mercury; however, a longer period of HRW treatment may be necessary to distinguish an obvious effect. The ATR-FTIR spectroscopy provided a rapid and precise method for monitoring the changes in biological tissues caused by a toxic compound at the molecular level.
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Affiliation(s)
- Mine Köktürk
- Department of Organic Agriculture Management, College of Applied Sciences, Igdir University, 76000, Igdir, Turkey
- Research Laboratory Application and Research Center (ALUM), Iğdır University, 76000, Iğdır, Turkey
| | - Mehmet Nuri Atalar
- Department of Nutrition and Dietetic, Faculty of Health Sciences, Iğdır University, 76000, Iğdır, Turkey
| | - Arzu Odunkıran
- Department of Hotel, Restaurant and Catering Services, Igdir University, 76000, Igdir, Turkey
| | - Menekşe Bulut
- Department of Food Engineering, Faculty of Engineering, Iğdır University, 76000, Iğdır, Turkey
- Research Center for Redox Applications in Foods (RCRAF), Iğdır University, 76000, Iğdır, Turkey
- Innovative Food Technologies Development, Application and Research Center, Igdir University, 76000, Iğdır, Turkey
| | - Duried Alwazeer
- Department of Nutrition and Dietetic, Faculty of Health Sciences, Iğdır University, 76000, Iğdır, Turkey.
- Research Center for Redox Applications in Foods (RCRAF), Iğdır University, 76000, Iğdır, Turkey.
- Innovative Food Technologies Development, Application and Research Center, Igdir University, 76000, Iğdır, Turkey.
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The rhizosphere of Sulla spinosissima growing in abandoned mining soils is a reservoir of heavy metals tolerant plant growth-promoting rhizobacteria. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2021.102236] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Singh S, Kumar V. Mercury detoxification by absorption, mercuric ion reductase, and exopolysaccharides: a comprehensive study. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:27181-27201. [PMID: 31001776 DOI: 10.1007/s11356-019-04974-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 03/22/2019] [Indexed: 06/09/2023]
Abstract
Mercury (Hg), the environmental toxicant, is present in the soil, water, and air as it is substantially distributed throughout the environment. Being extremely toxic even at low concentration, its remediation is utterly important. Therefore, it is necessary to detoxify the contaminant within the acceptable limits before threatening the environment. Although various conventional methods are being used, irrespective of high cost, it produces intermediate toxic by-product too. Biological methods are eco-friendly, clean, greener, and safer for the remediation of heavy metals corresponding to the conventional remediation due to their economic and high-tech constraints. Bioremediation is now being used for Hg (II) removal, which involves biosorption and bioaccumulation mechanisms or both, also mercuric ion reductase, exopolysaccharide play significant role in detoxification of mercury by acting a potential instrument for the remediation of heavy metals. In this review paper, we shed light on problems caused by mercury pollution, mercury cycle, and its global scenario and detoxification approaches by biological methods and result found in the literature.
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Affiliation(s)
- Shalini Singh
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826 004, India
| | - Vipin Kumar
- Laboratory of Applied Microbiology, Department of Environmental Science & Engineering, Indian Institute of Technology (Indian School of Mines), Dhanbad, Jharkhand, 826 004, India.
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Thomas FA, Sinha RK, Krishnan KP. Bacterial community structure of a glacio-marine system in the Arctic (Ny-Ålesund, Svalbard). THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 718:135264. [PMID: 31848061 DOI: 10.1016/j.scitotenv.2019.135264] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Revised: 10/25/2019] [Accepted: 10/27/2019] [Indexed: 06/10/2023]
Abstract
The bacterial community composition of a valley glacier in Svalbard, its pro-glacial channels, and the associated downstream fjord ecosystem was investigated so as to figure out the degree to which downslope transport of microbes from the glacier systems along a hydrological continuum impose an effect on the patterns of diversity in the fjord system. A combination of culture based and high-throughput amplicon sequencing approach was followed which resulted in significant variation (R = 0.873, p = 0.001) in the bacterial community structure between these ecosystems. Dominance of sequences belonging to class β-Proteobacteria was seen in the glacier snow, ice and melt waters (MW) while a relatively higher abundance of OTUs belonging to α-Proteobacteria and Verrucomicrobiae demarcated the fjord waters. Similarity percentage (SIMPER) analysis of the Operational Taxonomic Units (OTUs) showed that OTU 1,105,280 (9.15%) and OTU 331 (6.5%) belonging to Burkholderiaceae (β-proteobacteria) and OTU 101,660 (5.76%) and OTU 520 (5.07%) belonging to Rhodobacteraceae (α-proteobacteria) contributed maximum to the overall dissimilarity between the sampling sites. The bacterial community from the MWs were found to be true signatures of the glacier ecosystem while the Kongsfjorden bacterial fraction mostly represented heterotrophic marine taxa influenced by warm Atlantic waters and presence of organic matter. Significant presence of unknown taxa in the MWs suggests the need to study such unexplored, transient niches for a better understanding of the associated microbial processes. Among the various environmental parameters measured, nutrients (NO3- and SiO42-) were found to exhibit strong association with the MW bacterial community while temperature, trace metals, Cl- and SO42- ions were found to influence the fjord bacterial community. The significant differences in the bacterial community composition between the glacier and the fjord ecosystem suggest the unique nature of these systems which in turn is influenced by the associated environmental parameters.
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Affiliation(s)
- Femi Anna Thomas
- National Centre for Polar and Ocean Research, Headland Sada, Vasco da Gama, Goa 403804, India; School of Earth, Ocean and Atmospheric Sciences, Goa University, Taleigao Plateau Goa 403206, India
| | - Rupesh Kumar Sinha
- National Centre for Polar and Ocean Research, Headland Sada, Vasco da Gama, Goa 403804, India
| | - K P Krishnan
- National Centre for Polar and Ocean Research, Headland Sada, Vasco da Gama, Goa 403804, India.
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Abstract
The study of bacterial communities associated with extreme ecosystems is one of the most important tasks in modern microbial ecology. Despite a large number of studies being performed, the ecosystems that have not been sufficiently explored from the microbiological point of view still exist. Such research is needed for improving the understanding of the limits and mechanisms of bacterial survival under extreme conditions, and for revealing previously undescribed species and their role in global biospheric processes and their functional specifics. The results of the complex microbiological characteristics of permafrost and ice—collected on the Severniy Island in the northern part of the Novaya Zemlya archipelago—which have not previously been described from microbiological point of view, are presented in this article. The analysis included both culture-independent and culture-dependent methods, in particular, the spectra of metabolic activity range analysis in vitro under different temperature, pH and salinity conditions. High values for the total number of prokaryotes in situ (1.9 × 108–3.5 × 108 cells/g), a significant part of which was able to return to a metabolically active state after thawing, and moderate numbers of culturable bacteria (3.3 × 106–7.8 × 107 CFU/g) were revealed. Representatives of Proteobacteria, Actinobacteria, and Bacteroidetes were dominant in situ; Actinobacteria, Firmicutes, Proteobacteria, and Bacteroidetes were the most abundant phyla in vitro. Physiological assays revealed the mesophilic and neutrophilic optima of temperature and pH of culturing conditions, respectively, and wide temperature and pH ranges of culturable communities’ reproduction activity. Isolated strains were characterized by moderate halotolerant properties and antibiotic resistance, including multiple antibiotic resistance. It was found that almost all cultured bacterial diversity revealed (not just a few resistant species) had extremotolerant properties regarding a number of stress factors. This indicates the high adaptive potential of the studied microbial communities and their high sustainability and capability to retain functional activity under changing environmental (including climatic) conditions in wide ranges.
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