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Pákozdi K, Emri T, Antal K, Pócsi I. Global Transcriptomic Changes Elicited by sodB Deletion and Menadione Exposure in Aspergillus nidulans. J Fungi (Basel) 2023; 9:1060. [PMID: 37998866 PMCID: PMC10671992 DOI: 10.3390/jof9111060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 10/20/2023] [Accepted: 10/25/2023] [Indexed: 11/25/2023] Open
Abstract
Manganese superoxide dismutases (MnSODs) play a pivotal role in the preservation of mitochondrial integrity and function in fungi under various endogenous and exogenous stresses. Deletion of Aspergillus nidulans mnSOD/SodB increased oxidative stress sensitivity and apoptotic cell death rates as well as affected antioxidant enzyme and sterigmatocystin productions, respiration, conidiation and the stress tolerance of conidiospores. The physiological consequences of the lack of sodB were more pronounced during carbon starvation than in the presence of glucose. Lack of SodB also affected the changes in the transcriptome, recorded by high-throughput RNA sequencing, in menadione sodium bisulfite (MSB)-exposed, submerged cultures supplemented with glucose. Surprisingly, the difference between the global transcriptional changes of the ΔsodB mutant and the control strain were relatively small, indicating that the SodB-dependent maintenance of mitochondrial integrity was not essential under these experimental conditions. Owing to the outstanding physiological flexibility of the Aspergilli, certain antioxidant enzymes and endogenous antioxidants together with the reduction in mitochondrial functions compensated well for the lack of SodB. The lack of sodB reduced the growth of surface cultures more than of the submerged culture, which should be considered in future development of fungal disinfection methods.
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Affiliation(s)
- Klaudia Pákozdi
- Department of Molecular Biotechnology and Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary;
- HUN-REN–UD Fungal Stress Biology Research Group, H-4032 Debrecen, Hungary
- Doctoral School of Nutrition and Food Sciences, University of Debrecen, H-4032 Debrecen, Hungary
| | - Tamás Emri
- Department of Molecular Biotechnology and Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary;
- HUN-REN–UD Fungal Stress Biology Research Group, H-4032 Debrecen, Hungary
| | - Károly Antal
- Department of Zoology, Eszterházy Károly Catholic University, H-3300 Eger, Hungary;
| | - István Pócsi
- Department of Molecular Biotechnology and Microbiology, Institute of Biotechnology, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary;
- HUN-REN–UD Fungal Stress Biology Research Group, H-4032 Debrecen, Hungary
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Vig I, Benkő Z, Gila BC, Palczert Z, Jakab Á, Nagy F, Miskei M, Lee MK, Yu JH, Pócsi I, Emri T. Functional characterization of genes encoding cadmium pumping P 1B-type ATPases in Aspergillus fumigatus and Aspergillus nidulans. Microbiol Spectr 2023; 11:e0028323. [PMID: 37676031 PMCID: PMC10581124 DOI: 10.1128/spectrum.00283-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 06/12/2023] [Indexed: 09/08/2023] Open
Abstract
Several P1B-type ATPases are important Cd2+/Cu2+ pumps in Aspergillus species, and they are tightly associated with the heavy metal stress tolerance of these ascomycetous fungi. To better understand the roles of the two P1B-type ATPases, Aspergillus nidulans CrpA Cd2+/Cu2+ pump (orthologue of the Candida albicans Crp1 Cd2+/Cu2+ pump) and Aspergillus fumigatus PcaA Cd2+ pump (orthologue of the Saccharomyces cerevisiae Pca1 Cd2+ pump), we have generated individual mutants and characterized their heavy metal susceptibilities. The deletion of CrpA in A. nidulans has led to the increased sensitivity of the fungus to stresses induced by Zn2+, Fe2+, or the combination of oxidative-stress-inducing menadione sodium bisulfite and Fe3+. Heterologous expression of A. fumigatus PcaA in the S. cerevisiae pca1 deletion mutant has resulted in enhanced tolerance of the yeast to stresses elicited by Cd2+or Zn2+ but not by Fe2+/Fe3+ or Cu2+. Mammalian host immune defense can attack microbes by secreting Zn2+ or Cu2+, and the oxidative stress induced by host immune systems can also disturb metal (Cu2+, Fe2+, and Zn2+) homeostasis in microbes. In summary, PcaA and CrpA can protect fungal cells from these complex stresses that contribute to the virulence of the pathogenic Aspergillus species. Moreover, due to their presence on the fungal cell surface, these P1B-type ATPases may serve as a novel drug target in the future. IMPORTANCE Mammalian host immune defense disrupts heavy metal homeostasis of fungal pathogens. P1B-type ATPase of Aspergillus fumigatus and Aspergillus nidulans may help to cope with this stress and serve as virulence traits. In our experiments, both A. nidulans Cd2+/Cu2+ pump CrpA and A. fumigatus Cd2+ pump PcaA protected fungal cells from toxic Zn2+, and CrpA also decreased Fe2+ susceptibility most likely indirectly. In addition, CrpA protected cells against the combined stress induced by the oxidative stressor menadione and Fe3+. Since P1B-type ATPases are present on the fungal cell surface, these proteins may serve as a novel drug target in the future.
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Affiliation(s)
- Ildikó Vig
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, Debrecen, Hungary
- ELRN-UD Fungal Stress Biology Research Group, Debrecen, Hungary
| | - Zsigmond Benkő
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, Debrecen, Hungary
| | - Barnabás Cs. Gila
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, Debrecen, Hungary
| | - Zoltán Palczert
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, Debrecen, Hungary
| | - Ágnes Jakab
- Department of Medical Microbiology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary
| | - Fruzsina Nagy
- Department of Medical Microbiology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary
| | - Márton Miskei
- ELRN-UD Fungal Stress Biology Research Group, Debrecen, Hungary
| | - Mi-Kyung Lee
- Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup-si, South Korea
| | - Jae-Hyuk Yu
- Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - István Pócsi
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, Debrecen, Hungary
- ELRN-UD Fungal Stress Biology Research Group, Debrecen, Hungary
| | - Tamás Emri
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, Debrecen, Hungary
- ELRN-UD Fungal Stress Biology Research Group, Debrecen, Hungary
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Fungal bioproducts for petroleum hydrocarbons and toxic metals remediation: recent advances and emerging technologies. Bioprocess Biosyst Eng 2023; 46:393-428. [PMID: 35943595 DOI: 10.1007/s00449-022-02763-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 07/22/2022] [Indexed: 11/02/2022]
Abstract
Petroleum hydrocarbons and toxic metals are sources of environmental contamination and are harmful to all ecosystems. Fungi have metabolic and morphological plasticity that turn them into potential prototypes for technological development in biological remediation of these contaminants due to their ability to interact with a specific contaminant and/or produced metabolites. Although fungal bioinoculants producing enzymes, biosurfactants, polymers, pigments and organic acids have potential to be protagonists in mycoremediation of hydrocarbons and toxic metals, they can still be only adjuvants together with bacteria, microalgae, plants or animals in such processes. However, the sudden accelerated development of emerging technologies related to the use of potential fungal bioproducts such as bioinoculants, enzymes and biosurfactants in the remediation of these contaminants, has boosted fungal bioprocesses to achieve higher performance and possible real application. In this review, we explore scientific and technological advances in bioprocesses related to the production and/or application of these potential fungal bioproducts when used in remediation of hydrocarbons and toxic metals from an integral perspective of biotechnological process development. In turn, it sheds light to overcome existing technological limitations or enable new experimental designs in the remediation of these and other emerging contaminants.
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Chatterjee S, Das S. Whole-genome sequencing of biofilm-forming and chromium-resistant mangrove fungus Aspergillus niger BSC-1. World J Microbiol Biotechnol 2022; 39:55. [PMID: 36565384 DOI: 10.1007/s11274-022-03497-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 12/13/2022] [Indexed: 12/25/2022]
Abstract
Filamentous fungus Aspergillus niger has gained significant industrial and ecological value due to its great potential in enzymatic activities. The present study reports the complete genome sequence of A. niger BSC-1 which was isolated from Indian Sundarban mangrove ecosystem. The study revealed that the genome of A. niger BSC-1 was 35.1 Mbp assembled in 40 scaffolds with 49.2% GC content. A total of 10,709 genes were reported out of which 10,535 genes were predicted for encoding the proteins. BUSCO assessment showed 98.6% of genome completeness indicating high quality genome sequencing. The genome sequencing of A. niger BSC-1 revealed the presence of rodA and exgA genes for initial adhesion to surface and Ags genes for matrix formation, during biofilm growth. OrthoVenn2 analysis revealed that A.niger BSC-1 shared 9552 gene clusters with the reference strain A. niger CBS554.65. Semi-quantitative RT-PCR analysis unveiled the role of Ags1 and P-type ATPase in fungal biofilm formation and chromium (Cr) resistance, respectively. During biofilm growth the expression of Ags1 significantly (P < 0.0001; two-way ANOVA followed by Sidak's multiple comparisons test) increased with respect to planktonic culture revealing the possible involvement of Ags1 in biofilm matrix formation. Expression of P-type ATPase gene was significantly upregulated (P < 0.0001; one-way ANOVA followed by Dunnett's multiple comparisons test) with the increasing chromium concentration in the fungal culture. Besides, several other genes encoding metalloprotease, copper and zinc binding proteins, and NADH-dependent oxidoreductase were also found in the genome of A. niger BSC-1. These proteins are also involved in heavy metal tolerance and nanofabrication indicating that this filamentous fungus A. niger BSC-1 could be potentially utilized for chromium detoxification through biofilm or nanobiremediation.
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Affiliation(s)
- Shreosi Chatterjee
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769 008, Odisha, India
| | - Surajit Das
- Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, 769 008, Odisha, India.
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Jakab Á, Emri T, Csillag K, Szabó A, Nagy F, Baranyai E, Sajtos Z, Géczi D, Antal K, Kovács R, Szabó K, Dombrádi V, Pócsi I. The Negative Effect of Protein Phosphatase Z1 Deletion on the Oxidative Stress Tolerance of Candida albicans Is Synergistic with Betamethasone Exposure. J Fungi (Basel) 2021; 7:jof7070540. [PMID: 34356919 PMCID: PMC8305657 DOI: 10.3390/jof7070540] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 06/30/2021] [Accepted: 07/02/2021] [Indexed: 12/28/2022] Open
Abstract
The glucocorticoid betamethasone (BM) has potent anti-inflammatory and immunosuppressive effects; however, it increases the susceptibility of patients to superficial Candida infections. Previously we found that this disadvantageous side effect can be counteracted by menadione sodium bisulfite (MSB) induced oxidative stress treatment. The fungus specific protein phosphatase Z1 (CaPpz1) has a pivotal role in oxidative stress response of Candida albicans and was proposed as a potential antifungal drug target. The aim of this study was to investigate the combined effects of CaPPZ1 gene deletion and MSB treatment in BM pre-treated C. albicans cultures. We found that the combined treatment increased redox imbalance, enhanced the specific activities of antioxidant enzymes, and reduced the growth in cappz1 mutant (KO) strain. RNASeq data demonstrated that the presence of BM markedly elevated the number of differentially expressed genes in the MSB treated KO cultures. Accumulation of reactive oxygen species, increased iron content and fatty acid oxidation, as well as the inhibiting ergosterol biosynthesis and RNA metabolic processes explain, at least in part, the fungistatic effect caused by the combined stress exposure. We suggest that the synergism between MSB treatment and CaPpz1 inhibition could be considered in developing of a novel combinatorial antifungal strategy accompanying steroid therapy.
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Affiliation(s)
- Ágnes Jakab
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary; (T.E.); (K.C.); (A.S.); (D.G.); (I.P.)
- Correspondence:
| | - Tamás Emri
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary; (T.E.); (K.C.); (A.S.); (D.G.); (I.P.)
| | - Kinga Csillag
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary; (T.E.); (K.C.); (A.S.); (D.G.); (I.P.)
| | - Anita Szabó
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary; (T.E.); (K.C.); (A.S.); (D.G.); (I.P.)
| | - Fruzsina Nagy
- Department of Medical Microbiology, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; (F.N.); (R.K.)
| | - Edina Baranyai
- Agilent Atomic Spectroscopy Partner Laboratory, Department of Inorganic and Analytical Chemistry, University of Debrecen, 4032 Debrecen, Hungary; (E.B.); (Z.S.)
| | - Zsófi Sajtos
- Agilent Atomic Spectroscopy Partner Laboratory, Department of Inorganic and Analytical Chemistry, University of Debrecen, 4032 Debrecen, Hungary; (E.B.); (Z.S.)
| | - Dóra Géczi
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary; (T.E.); (K.C.); (A.S.); (D.G.); (I.P.)
| | - Károly Antal
- Department of Zoology, Faculty of Sciences, Eszterházy Károly University, 3300 Eger, Hungary;
| | - Renátó Kovács
- Department of Medical Microbiology, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; (F.N.); (R.K.)
- Faculty of Pharmacy, University of Debrecen, 4032 Debrecen, Hungary
| | - Krisztina Szabó
- Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; (K.S.); (V.D.)
| | - Viktor Dombrádi
- Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, 4032 Debrecen, Hungary; (K.S.); (V.D.)
| | - István Pócsi
- Department of Molecular Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, 4032 Debrecen, Hungary; (T.E.); (K.C.); (A.S.); (D.G.); (I.P.)
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Emri T, Gila B, Antal K, Fekete F, Moon H, Yu JH, Pócsi I. AtfA-Independent Adaptation to the Toxic Heavy Metal Cadmium in Aspergillus nidulans. Microorganisms 2021; 9:microorganisms9071433. [PMID: 34361869 PMCID: PMC8307709 DOI: 10.3390/microorganisms9071433] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 06/28/2021] [Accepted: 06/30/2021] [Indexed: 12/13/2022] Open
Abstract
Cadmium is an exceptionally toxic industrial and environmental pollutant classified as a human carcinogen. In order to provide insight into how we can keep our environment safe from cadmium contamination and prevent the accumulation of it in the food chain, we aim to elucidate how Aspergillus nidulans, one of the most abundant fungi in soil, survives and handles cadmium stress. As AtfA is the main transcription factor governing stress responses in A. nidulans, we examined genome-wide expression responses of wild-type and the atfA null mutant exposed to CdCl2. Both strains showed up-regulation of the crpA Cu2+/Cd2+ pump gene and AN7729 predicted to encode a putative bis(glutathionato)-cadmium transporter, and transcriptional changes associated with elevated intracellular Cys availability leading to the efficient adaptation to Cd2+. Although the deletion of atfA did not alter the cadmium tolerance of the fungus, the cadmium stress response of the mutant differed from that of a reference strain. Promoter and transcriptional analyses of the “Phospho-relay response regulator” genes suggest that the AtfA-dependent regulation of these genes can be relevant in this phenomenon. We concluded that the regulatory network of A. nidulans has a high flexibility allowing the fungus to adapt efficiently to stress both in the presence and absence of this important transcription factor.
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Affiliation(s)
- Tamás Emri
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, 4032 Debrecen, Hungary; (B.G.); (F.F.); (I.P.)
- Correspondence:
| | - Barnabás Gila
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, 4032 Debrecen, Hungary; (B.G.); (F.F.); (I.P.)
- Doctoral School of Nutrition and Food Sciences, University of Debrecen, 4032 Debrecen, Hungary
| | - Károly Antal
- Department of Zoology, Eszterházy Károly University, 3300 Eger, Hungary;
| | - Fanni Fekete
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, 4032 Debrecen, Hungary; (B.G.); (F.F.); (I.P.)
| | - Heungyun Moon
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA; (H.M.); (J.-H.Y.)
| | - Jae-Hyuk Yu
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA; (H.M.); (J.-H.Y.)
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - István Pócsi
- Department of Molecular Biotechnology and Microbiology, Faculty of Sciences and Technology, University of Debrecen, 4032 Debrecen, Hungary; (B.G.); (F.F.); (I.P.)
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Abstract
Biosorption is a variant of sorption techniques in which the sorbent is a material of biological origin. This technique is considered to be low cost and environmentally friendly, and it can be used to remove pollutants from aqueous solutions. The objective of this review is to report on the most significant recent works and most recent advances that have occurred in the last couple of years (2019–2020) in the field of biosorption. Biosorption of metals and organic compounds (dyes, antibiotics and other emerging contaminants) is considered in this review. In addition, the use and possibilities of different forms of biomass (live or dead, modified or immobilized) are also considered.
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