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Harper M, Nudurupati U, Workman RJ, Lakoba TI, Perez N, Nelson D, Ou Y, Punihaole D. Toward determining amyloid fibril structures using experimental constraints from Raman spectroscopy. J Chem Phys 2023; 159:225101. [PMID: 38078532 PMCID: PMC10720587 DOI: 10.1063/5.0177437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 11/20/2023] [Indexed: 12/17/2023] Open
Abstract
We present structural models for three different amyloid fibril polymorphs prepared from amylin20-29 (sequence SNNFGAILSS) and amyloid-β25-35 (Aβ25-35) (sequence GSNKGAIIGLM) peptides. These models are based on the amide C=O bond and Ramachandran ψ-dihedral angle data from Raman spectroscopy, which were used as structural constraints to guide molecular dynamics (MD) simulations. The resulting structural models indicate that the basic structural motif of amylin20-29 and Aβ25-35 fibrils is extended β-strands. Our data indicate that amylin20-29 forms both antiparallel and parallel β-sheet fibril polymorphs, while Aβ25-35 forms a parallel β-sheet fibril structure. Overall, our work lays the foundation for using Raman spectroscopy in conjunction with MD simulations to determine detailed molecular-level structural models of amyloid fibrils in a manner that complements gold-standard techniques, such as solid-state nuclear magnetic resonance and cryogenic electron microscopy.
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Affiliation(s)
- Madeline Harper
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, USA
| | - Uma Nudurupati
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, USA
| | - Riley J. Workman
- Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, Texas 77555, USA
| | - Taras I. Lakoba
- Department of Mathematics and Statistics, University of Vermont, Burlington, Vermont 05405, USA
| | - Nicholas Perez
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, USA
| | - Delaney Nelson
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, USA
| | - Yangguang Ou
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, USA
| | - David Punihaole
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, USA
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Allione M, Limongi T, Marini M, Torre B, Zhang P, Moretti M, Perozziello G, Candeloro P, Napione L, Pirri CF, Di Fabrizio E. Micro/Nanopatterned Superhydrophobic Surfaces Fabrication for Biomolecules and Biomaterials Manipulation and Analysis. MICROMACHINES 2021; 12:1501. [PMID: 34945349 PMCID: PMC8708205 DOI: 10.3390/mi12121501] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/19/2021] [Accepted: 11/25/2021] [Indexed: 01/04/2023]
Abstract
Superhydrophobic surfaces display an extraordinary repulsion to water and water-based solutions. This effect emerges from the interplay of intrinsic hydrophobicity of the surface and its morphology. These surfaces have been established for a long time and have been studied for decades. The increasing interest in recent years has been focused towards applications in many different fields and, in particular, biomedical applications. In this paper, we review the progress achieved in the last years in the fabrication of regularly patterned superhydrophobic surfaces in many different materials and their exploitation for the manipulation and characterization of biomaterial, with particular emphasis on the issues affecting the yields of the fabrication processes and the quality of the manufactured devices.
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Affiliation(s)
- Marco Allione
- Center for Sustainable Future Technologies @POLITO, Istituto Italiano di Tecnologia, Via Livorno 60, 10144 Turin, Italy;
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
| | - Tania Limongi
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
| | - Monica Marini
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
| | - Bruno Torre
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
| | - Peng Zhang
- Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (P.Z.); (M.M.)
| | - Manola Moretti
- Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia; (P.Z.); (M.M.)
| | - Gerardo Perozziello
- BioNEM Laboratory, Department of Experimental and Clinical Medicine, Campus S. Venuta, Magna Graecia University, Germaneto, Viale Europa, 88100 Catanzaro, Italy; (G.P.); (P.C.)
| | - Patrizio Candeloro
- BioNEM Laboratory, Department of Experimental and Clinical Medicine, Campus S. Venuta, Magna Graecia University, Germaneto, Viale Europa, 88100 Catanzaro, Italy; (G.P.); (P.C.)
| | - Lucia Napione
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
| | - Candido Fabrizio Pirri
- Center for Sustainable Future Technologies @POLITO, Istituto Italiano di Tecnologia, Via Livorno 60, 10144 Turin, Italy;
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
| | - Enzo Di Fabrizio
- Dipartimento di Scienza Applicata e Tecnologia (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Turin, Italy; (M.M.); (B.T.); (L.N.); (E.D.F.)
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Kuhar N, Sil S, Umapathy S. Potential of Raman spectroscopic techniques to study proteins. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 258:119712. [PMID: 33965670 DOI: 10.1016/j.saa.2021.119712] [Citation(s) in RCA: 71] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 02/23/2021] [Accepted: 03/12/2021] [Indexed: 05/18/2023]
Abstract
Proteins are large, complex molecules responsible for various biological processes. However, protein misfolding may lead to various life-threatening diseases. Therefore, it is vital to understand the shape and structure of proteins. Despite numerous techniques, a mechanistic understanding of the protein folding process is still unclear. Therefore, new techniques are continually being explored. In the present article, we have discussed the importance of Raman spectroscopy, Raman Optical Activity (ROA) and various other advancements in Raman spectroscopy to understand protein structure and conformational changes based on the review of our earlier work and recent literature. A Raman spectrum of a protein provides unique signatures for various secondary structures like helices, beta-sheets, turns, random structures, etc., and various amino acid residues such as tyrosine, tryptophan, and phenylalanine. We have shown how Raman spectra can differentiate between bovine serum albumin (BSA) and lysozyme protein based on their difference in sequence and structure (primary, secondary and tertiary). Although it is challenging to elucidate the structure of a protein using a Raman spectrum alone, Raman spectra can be used to differentiate small changes in conformations of proteins such as BSA during melting. Various new advancements in technique and data analyses in Raman spectroscopic studies of proteins have been discussed. The last part of the review focuses on the importance of the ROA spectrum to understand additional features about proteins. The ROA spectrum is rich in information about the protein backbone due to its rigidity compared to its side chains. Furthermore, the ROA spectra of lysozyme and BSA have been presented to show how ROA provides extra information about the solvent properties of proteins.
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Affiliation(s)
- Nikki Kuhar
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bengaluru 560 012, Karnataka, India
| | - Sanchita Sil
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bengaluru 560 012, Karnataka, India; Defence Bioengineering and Electromedical Laboratory (DEBEL), Defence Research and Development Organization (DRDO), C V Raman Nagar, Bangalore 560 093, Karnataka, India
| | - Siva Umapathy
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bengaluru 560 012, Karnataka, India; Department of Instrumentation & Applied Physics, Indian Institute of Science, Bengaluru 560 012, Karnataka, India.
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Devitt G, Crisford A, Rice W, Weismiller HA, Fan Z, Commins C, Hyman BT, Margittai M, Mahajan S, Mudher A. Conformational fingerprinting of tau variants and strains by Raman spectroscopy. RSC Adv 2021; 11:8899-8915. [PMID: 34381596 PMCID: PMC8330415 DOI: 10.1039/d1ra00870f] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 02/18/2021] [Indexed: 12/11/2022] Open
Abstract
Tauopathies are a group of disorders in which the deposition of abnormally folded tau protein accompanies neurodegeneration. The development of methods for detection and classification of pathological changes in protein conformation are desirable for understanding the factors that influence the structural polymorphism of aggregates in tauopathies. We have previously demonstrated the utility of Raman spectroscopy for the characterization and discrimination of different protein aggregates, including tau, based on their unique conformational signatures. Building on this, in the present study, we assess the utility of Raman spectroscopy for characterizing and distinguishing different conformers of the same protein which in the case of tau are unique tau strains generated in vitro. We now investigate the impact of aggregation environment, cofactors, post-translational modification and primary sequence on the Raman fingerprint of tau fibrils. Using quantitative conformational fingerprinting and multivariate statistical analysis, we found that the aggregation of tau in different buffer conditions resulted in the formation of distinct fibril strains. Unique spectral markers were identified for tau fibrils generated using heparin or RNA cofactors, as well as for phosphorylated tau. We also determined that the primary sequence of the tau monomer influenced the conformational signature of the resulting tau fibril, including 2N4R, 0N3R, K18 and P301S tau variants. These results highlight the conformational polymorphism of tau fibrils, which is reflected in the wide range of associated neurological disorders. Furthermore, the analyses presented in this study provide a benchmark for the Raman spectroscopic characterization of tau strains, which may shed light on how the aggregation environment, cofactors and post-translational modifications influence tau conformation in vivo in future studies.
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Affiliation(s)
- George Devitt
- School of Biological Sciences, Faculty of Environmental and Life Sciences, University of Southampton Highfield Southampton SO17 1BJ UK .,School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton Highfield Southampton SO17 1BJ UK.,Institute for Life Sciences, University of Southampton Highfield Southampton SO17 1BJ UK
| | - Anna Crisford
- School of Biological Sciences, Faculty of Environmental and Life Sciences, University of Southampton Highfield Southampton SO17 1BJ UK .,School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton Highfield Southampton SO17 1BJ UK
| | - William Rice
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton Highfield Southampton SO17 1BJ UK
| | - Hilary A Weismiller
- Department of Chemistry and Biochemistry, University of Denver 2190 E. Iliff Ave. Denver CO 80208 USA
| | - Zhanyun Fan
- Department of Neurology, Harvard Medical School, MassGeneral Institute for Neurodegenerative Disease, Massachusetts General Hospital Charlestown MA 02129 USA
| | - Caitlin Commins
- Department of Neurology, Harvard Medical School, MassGeneral Institute for Neurodegenerative Disease, Massachusetts General Hospital Charlestown MA 02129 USA
| | - Bradley T Hyman
- Department of Neurology, Harvard Medical School, MassGeneral Institute for Neurodegenerative Disease, Massachusetts General Hospital Charlestown MA 02129 USA
| | - Martin Margittai
- Department of Chemistry and Biochemistry, University of Denver 2190 E. Iliff Ave. Denver CO 80208 USA
| | - Sumeet Mahajan
- School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton Highfield Southampton SO17 1BJ UK.,Institute for Life Sciences, University of Southampton Highfield Southampton SO17 1BJ UK
| | - Amrit Mudher
- School of Biological Sciences, Faculty of Environmental and Life Sciences, University of Southampton Highfield Southampton SO17 1BJ UK .,Institute for Life Sciences, University of Southampton Highfield Southampton SO17 1BJ UK
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Zhou H, Simmons CS, Sarntinoranont M, Subhash G. Raman Spectroscopy Methods to Characterize the Mechanical Response of Soft Biomaterials. Biomacromolecules 2020; 21:3485-3497. [PMID: 32833438 DOI: 10.1021/acs.biomac.0c00818] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Raman spectroscopy has been used extensively to characterize the influence of mechanical deformation on microstructure changes in biomaterials. While traditional piezo-spectroscopy has been successful in assessing internal stresses of hard biomaterials by tracking prominent peak shifts, peak shifts due to applied loads are near or below the resolution limit of the spectrometer for soft biomaterials with moduli in the kilo- to mega-Pascal range. In this Review, in addition to peak shifts, other spectral features (e.g., polarized intensity and intensity ratio) that provide quantitative assessments of microstructural orientation and secondary structure in soft biomaterials and their strain dependence are discussed. We provide specific examples for each method and classify sensitive Raman characteristic bands common across natural (e.g., soft tissue) and synthetic (e.g., polymeric scaffolds) soft biomaterials upon mechanical deformation. This Review can provide guidance for researchers aiming to analyze micromechanics of soft tissues and engineered tissue constructs by Raman spectroscopy.
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Affiliation(s)
- Hui Zhou
- Mechanical and Aerospace Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Chelsey S Simmons
- Mechanical and Aerospace Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Malisa Sarntinoranont
- Mechanical and Aerospace Engineering, University of Florida, Gainesville, Florida 32611, United States
| | - Ghatu Subhash
- Mechanical and Aerospace Engineering, University of Florida, Gainesville, Florida 32611, United States
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Chen D, Narayanan N, Federici E, Yang Z, Zuo X, Gao J, Fang F, Deng M, Campanella OH, Jones OG. Electrospinning Induced Orientation of Protein Fibrils. Biomacromolecules 2020; 21:2772-2785. [DOI: 10.1021/acs.biomac.0c00500] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
| | - Naagarajan Narayanan
- Department of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, 610 Purdue Mall, West Lafayette, Indiana 47907, United States
| | | | - Zhi Yang
- School of Food & Advanced Technology, Massey University, Albany, Auckland 0632, New Zealand
| | - Xiaobing Zuo
- X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Jinling Gao
- School of Aeronautics and Astronautics, Purdue University, 701 W Stadium Ave., West Lafayette, Indiana 47907, United States
| | | | - Meng Deng
- Department of Agricultural and Biological Engineering, Bindley Bioscience Center, Purdue University, 610 Purdue Mall, West Lafayette, Indiana 47907, United States
| | - Osvaldo H. Campanella
- Department of Food Science and Technology, The Ohio State University, 2015 Fyffe Rd., Columbus, Ohio 43210, United States
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Double-edged effects of aluminium ions on amyloid fibrillation of hen egg-white lysozyme. Int J Biol Macromol 2019; 132:929-938. [PMID: 30954597 DOI: 10.1016/j.ijbiomac.2019.04.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Revised: 03/30/2019] [Accepted: 04/02/2019] [Indexed: 12/14/2022]
Abstract
Elucidating the effects of Al(III) ions on amyloid fibrillation is important to understand the association between metal ions and Alzheimer's disease. Here, Raman spectroscopy was applied to investigate amyloid fibrillation of hen egg-white lysozymes during thermal incubation with Al(III) ions or acids, combined with atomic force microscopy and thioflavin T fluorescence assays. Kinetics of conformational changes in lysozymes were assessed by monitoring six characteristic Raman spectral markers. The peak of Phe residues at 1003 cm-1 and two bands of Trp residues at 759 cm-1 and 1340-1360 cm-1 corresponded to the lysozyme tertiary structure, whereas two NCαC stretching vibrations at 899 cm-1 and 935 cm-1 and an amide I band were associated with the lysozyme skeleton. There may be a four-stage transformation mechanism underlying the kinetics of amyloid fibrillation of lysozymes with the thermal/Al(III) treatment. Comparison of kinetics under thermal/Al(III) and thermal/acid conditions revealed double-edged roles of Al(III) ions in amyloid fibrillation of lysozymes. Specifically, in addition to postponing α-helix degradation, Al(III) ions accelerated conformational transformations from α-helices to organized β-sheets. The present investigation sheds light on the controversial effects of Al(III) ions on amyloid fibrillation of lysozymes.
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Guin T, Kowalski BA, Rao R, Auguste AD, Grabowski CA, Lloyd PF, Tondiglia VP, Maruyama B, Vaia RA, White TJ. Electrical Control of Shape in Voxelated Liquid Crystalline Polymer Nanocomposites. ACS APPLIED MATERIALS & INTERFACES 2018; 10:1187-1194. [PMID: 29239172 DOI: 10.1021/acsami.7b13814] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Liquid crystal elastomers (LCEs) exhibit anisotropic mechanical, thermal, and optical properties. The director orientation within an LCE can be spatially localized into voxels [three-dimensional (3-D) volume elements] via photoalignment surfaces. Here, we prepare nanocomposites in which both the orientation of the LCE and single-walled carbon nanotube (SWNT) are locally and arbitrarily oriented in discrete voxels. The addition of SWNTs increases the stiffness of the LCE in the orientation direction, yielding a material with a 5:1 directional modulus contrast. The inclusion of SWNT modifies the thermomechanical response and, most notably, is shown to enable distinctive electromechanical deformation of the nanocomposite. Specifically, the incorporation of SWNTs sensitizes the LCE to a dc field, enabling uniaxial electrostriction along the orientation direction. We demonstrate that localized orientation of the LCE and SWNT allows complex 3-D shape transformations to be electrically triggered. Initial experiments indicate that the SWNT-polymer interfaces play a crucial role in enabling the electrostriction reported herein.
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Affiliation(s)
- Tyler Guin
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
- Azimuth Corporation , 4027 Colonel Glenn Highway, Beavercreek, Ohio 45431, United States
| | - Benjamin A Kowalski
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
- Azimuth Corporation , 4027 Colonel Glenn Highway, Beavercreek, Ohio 45431, United States
| | - Rahul Rao
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
| | - Anesia D Auguste
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
| | - Christopher A Grabowski
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
- UES, Inc. , 4401 Dayton Xenia Rd, Beavercreek, Ohio 45432, United States
| | - Pamela F Lloyd
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
- UES, Inc. , 4401 Dayton Xenia Rd, Beavercreek, Ohio 45432, United States
| | - Vincent P Tondiglia
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
- Azimuth Corporation , 4027 Colonel Glenn Highway, Beavercreek, Ohio 45431, United States
| | - Benji Maruyama
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
| | - Richard A Vaia
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
| | - Timothy J White
- Air Force Research Laboratory, Materials and Manufacturing Directorate , 3005 Hobson Way, Wright-Patterson AFB, Ohio 45433-7750, United States
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Sereda V, Ralbovsky NM, Vasudev MC, Naik RR, Lednev IK. Polarized Raman Spectroscopy for Determining the Orientation of di-D-phenylalanine Molecules in a Nanotube. JOURNAL OF RAMAN SPECTROSCOPY : JRS 2016; 47:1056-1062. [PMID: 27795612 PMCID: PMC5079532 DOI: 10.1002/jrs.4884] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Self-assembly of short peptides into nanostructures has become an important strategy for the bottom-up fabrication of nanomaterials. Significant interest to such peptide-based building blocks is due to the opportunity to control the structure and properties of well-structured nanotubes, nanofibrils, and hydrogels. X-ray crystallography and solution NMR, two major tools of structural biology, have significant limitations when applied to peptide nanotubes because of their non-crystalline structure and large weight. Polarized Raman spectroscopy was utilized for structural characterization of well-aligned D-Diphenylalanine nanotubes. The orientation of selected chemical groups relative to the main axis of the nanotube was determined. Specifically, the C-N bond of CNH3+groups is oriented parallel to the nanotube axis, the peptides' carbonyl groups are tilted at approximately 54° from the axis and the COO- groups run perpendicular to the axis. The determined orientation of chemical groups allowed the understanding of the orientation of D-diphenylalanine molecule that is consistent with its equilibrium conformation. The obtained data indicate that there is only one orientation of D-diphenylalanine molecules with respect to the nanotube main axis.
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Affiliation(s)
- Valentin Sereda
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY 12222, United States
| | - Nicole M. Ralbovsky
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY 12222, United States
| | - Milana C. Vasudev
- Department of Bioengineering, University of Massachusetts Dartmouth, 285 Old Westport Road, Dartmouth MA 02747, United States
| | - Rajesh R. Naik
- Soft Matter Materials Branch, Materials and Manufacturing Directorate, Wright-Patterson Air Force Base, Dayton, Ohio 45433, United States
| | - Igor K. Lednev
- Department of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, NY 12222, United States
- Corresponding author: , Phone: (518) 591 8863, Fax: (518) 442-3462
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Kurouski D, Van Duyne RP, Lednev IK. Exploring the structure and formation mechanism of amyloid fibrils by Raman spectroscopy: a review. Analyst 2016; 140:4967-80. [PMID: 26042229 DOI: 10.1039/c5an00342c] [Citation(s) in RCA: 176] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Amyloid fibrils are β-sheet rich protein aggregates that are strongly associated with various neurodegenerative diseases. Raman spectroscopy has been broadly utilized to investigate protein aggregation and amyloid fibril formation and has been shown to be capable of revealing changes in secondary and tertiary structures at all stages of fibrillation. When coupled with atomic force (AFM) and scanning electron (SEM) microscopies, Raman spectroscopy becomes a powerful spectroscopic approach that can investigate the structural organization of amyloid fibril polymorphs. In this review, we discuss the applications of Raman spectroscopy, a unique, label-free and non-destructive technique for the structural characterization of amyloidogenic proteins, prefibrilar oligomers, and mature fibrils.
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Affiliation(s)
- Dmitry Kurouski
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois, USA.
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11
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Sereda V, Sawaya MR, Lednev IK. Structural Organization of Insulin Fibrils Based on Polarized Raman Spectroscopy: Evaluation of Existing Models. J Am Chem Soc 2015; 137:11312-20. [DOI: 10.1021/jacs.5b07535] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Valentin Sereda
- Department
of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, New York 12222, United States
| | - Michael R. Sawaya
- UCLA−DOE Institute, 611 Charles
E. Young Drive, Los Angeles, California 90095-1570, United States
| | - Igor K. Lednev
- Department
of Chemistry, University at Albany, SUNY, 1400 Washington Avenue, Albany, New York 12222, United States
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12
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Fang G, Zheng Z, Yao J, Chen M, Tang Y, Zhong J, Qi Z, Li Z, Shao Z, Chen X. Tough protein-carbon nanotube hybrid fibers comparable to natural spider silks. J Mater Chem B 2015; 3:3940-3947. [PMID: 32262616 DOI: 10.1039/c5tb00448a] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Animal silks, especially spider dragline silks, have an excellent portfolio of mechanical properties, but it is still a challenge to obtain artificial silk fibers with similar properties to the natural ones. In this paper, we show how to extrude tough regenerated silk fibers by adding a small amount of commercially available functionalized multiwalled carbon nanotubes (less than 1%) through an environmentally friendly wet-spinning process reported by this laboratory previously. Most of the resulting regenerated silk fibers exhibited a breaking energy beyond 130 MJ m-3, which is comparable to spider dragline silks (∼160 MJ m-3). The best of these fibers in terms of performance show a breaking stress of 0.42 GPa, breaking strain of 59%, and breaking energy of 186 MJ m-3. In addition, we used several advanced characterization techniques, such as synchrotron radiation FTIR microspectroscopy and synchrotron radiation X-ray diffraction, to reveal the toughening mechanism in such a protein-inorganic hybrid system. We believe our attempt to produce such tough protein-based hybrid fibers by using cheap, abundant and sustainable regenerated silkworm protein and commercially available functionalized carbon nanotubes, with simplified industrial wet-spinning apparatus, may open up a practical way for the industrial production of super-tough fiber materials.
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Affiliation(s)
- Guangqiang Fang
- State Key Laboratory of Molecular Engineering of Polymers, Collaborative Innovation Center of Polymers and Polymer Composite Materials, Department of Macromolecular Science, Laboratory of Advanced Materials, Fudan University, Shanghai, 200433, People's Republic of China.
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