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Li H, Che R, Zhu J, Yang X, Li J, Fernie AR, Yan J. Multi-omics-driven advances in the understanding of triacylglycerol biosynthesis in oil seeds. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:999-1017. [PMID: 38009661 DOI: 10.1111/tpj.16545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 11/01/2023] [Indexed: 11/29/2023]
Abstract
Vegetable oils are rich sources of polyunsaturated fatty acids and energy as well as valuable sources of human food, animal feed, and bioenergy. Triacylglycerols, which are comprised of three fatty acids attached to a glycerol backbone, are the main component of vegetable oils. Here, we review the development and application of multiple-level omics in major oilseeds and emphasize the progress in the analysis of the biological roles of key genes underlying seed oil content and quality in major oilseeds. Finally, we discuss future research directions in functional genomics research based on current omics and oil metabolic engineering strategies that aim to enhance seed oil content and quality, and specific fatty acids components according to either human health needs or industrial requirements.
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Affiliation(s)
- Hui Li
- School of Biological Science and Technology, University of Jinan, Jinan, 250022, China
| | - Ronghui Che
- School of Biological Science and Technology, University of Jinan, Jinan, 250022, China
| | - Jiantang Zhu
- School of Biological Science and Technology, University of Jinan, Jinan, 250022, China
| | - Xiaohong Yang
- State Key Laboratory of Plant Physiology and Biochemistry, National Maize Improvement Center of China, China Agricultural University, Beijing, 100193, China
| | - Jiansheng Li
- National Maize Improvement Center of China, China Agricultural University, Beijing, 100193, China
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Jianbing Yan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
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2
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Xu Y, Chen T, Zhang H, Nuermaimaiti Y, Zhang S, Wang F, Xiao J, Liu S, Shao W, Cao Z, Wang J, Chen Y. Application of Near-Infrared Reflectance Spectroscopy for Predicting Chemical Composition of Feces in Holstein Dairy Cows and Calves. Animals (Basel) 2023; 14:52. [PMID: 38200783 PMCID: PMC10778093 DOI: 10.3390/ani14010052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/18/2023] [Accepted: 12/18/2023] [Indexed: 01/12/2024] Open
Abstract
Traditional methods for determining the chemical composition of cattle feces are uneconomical. In contrast, near-infrared reflectance spectroscopy (NIRS) has emerged as a successful technique for assessing chemical compositions. Therefore, in this study, the feasibility of NIRS in terms of predicting fecal chemical composition was explored. Cattle fecal samples were subjected to chemical analysis using conventional wet chemistry techniques and a NIRS spectrometer. The resulting fecal spectra were used to construct predictive equations to estimate the chemical composition of the feces in both cows and calves. The coefficients of determination for calibration (RSQ) were employed to evaluate the calibration of the predictive equations. Calibration results for cows (dry matter [DM], RSQ = 0.98; crude protein [CP], RSQ = 0.93; ether extract [EE], RSQ = 0.91; neutral detergent fiber [NDF], RSQ = 0.82; acid detergent fiber [ADF], RSQ = 0.89; ash, RSQ = 0.84) and calves (DM, RSQ = 0.92; CP, RSQ = 0.89; EE, RSQ = 0.77; NDF, RSQ = 0.76; ADF, RSQ = 0.92; ash, RSQ = 0.97) demonstrated that NIRS is a cost-effective and efficient alternative for assessing the chemical composition of dairy cattle feces. This provides a new method for rapidly predicting fecal chemical content in cows and calves.
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Affiliation(s)
- Yiming Xu
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; (Y.X.); (S.Z.); (F.W.); (W.S.)
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Tianyu Chen
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Hongxing Zhang
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Yiliyaer Nuermaimaiti
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Siyuan Zhang
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; (Y.X.); (S.Z.); (F.W.); (W.S.)
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Fei Wang
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; (Y.X.); (S.Z.); (F.W.); (W.S.)
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Jianxin Xiao
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Shuai Liu
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Wei Shao
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; (Y.X.); (S.Z.); (F.W.); (W.S.)
| | - Zhijun Cao
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Jingjun Wang
- State Key Laboratory of Animal Nutrition and Feeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China; (T.C.); (H.Z.); (Y.N.); (J.X.); (S.L.); (Z.C.)
| | - Yong Chen
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; (Y.X.); (S.Z.); (F.W.); (W.S.)
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3
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Agbonkonkon N, Wojciechowski G, Abbott DA, Gaucher SP, Yim DR, Thompson AW, Leavell MD. Faster, reduced cost calibration method development methods for the analysis of fermentation product using near-infrared spectroscopy (NIRS). J Ind Microbiol Biotechnol 2021; 48:6293849. [PMID: 34089321 PMCID: PMC9113423 DOI: 10.1093/jimb/kuab033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 03/17/2021] [Indexed: 11/18/2022]
Abstract
Recent innovations in synthetic biology, fermentation, and process development have decreased time to market by reducing strain construction cycle time and effort. Faster analytical methods are required to keep pace with these innovations, but current methods of measuring fermentation titers often involve manual intervention and are slow, time-consuming, and difficult to scale. Spectroscopic methods like near-infrared (NIR) spectroscopy address this shortcoming; however, NIR methods require calibration model development that is often costly and time-consuming. Here, we introduce two approaches that speed up calibration model development. First, generalized calibration modeling (GCM) or sibling modeling, which reduces calibration modeling time and cost by up to 50% by reducing the number of samples required. Instead of constructing analyte-specific models, GCM combines a reduced number of spectra from several individual analytes to produce a large pool of spectra for a generalized model predicting all analyte levels. Second, randomized multicomponent multivariate modeling (RMMM) reduces modeling time by mixing multiple analytes into one sample matrix and then taking the spectral measurements. Afterward, individual calibration methods are developed for the various components in the mixture. Time saved from the use of RMMM is proportional to the number of components or analytes in the mixture. When combined, the two methods effectively reduce the associated cost and time for calibration model development by a factor of 10.
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Affiliation(s)
- Nosa Agbonkonkon
- Amyris, Inc., 5885 Hollis Street, Suite 100, Emeryville, CA 94608, USA
| | | | - Derek A Abbott
- Amyris, Inc., 5885 Hollis Street, Suite 100, Emeryville, CA 94608, USA
| | - Sara P Gaucher
- Amyris, Inc., 5885 Hollis Street, Suite 100, Emeryville, CA 94608, USA
| | - Daniel R Yim
- Amyris, Inc., 5885 Hollis Street, Suite 100, Emeryville, CA 94608, USA
| | - Andrew W Thompson
- Amyris, Inc., 5885 Hollis Street, Suite 100, Emeryville, CA 94608, USA
| | - Michael D Leavell
- Amyris, Inc., 5885 Hollis Street, Suite 100, Emeryville, CA 94608, USA
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4
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Grassi S, Jolayemi OS, Giovenzana V, Tugnolo A, Squeo G, Conte P, De Bruno A, Flamminii F, Casiraghi E, Alamprese C. Near Infrared Spectroscopy as a Green Technology for the Quality Prediction of Intact Olives. Foods 2021; 10:foods10051042. [PMID: 34064592 PMCID: PMC8151771 DOI: 10.3390/foods10051042] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 05/04/2021] [Accepted: 05/06/2021] [Indexed: 11/16/2022] Open
Abstract
Poorly emphasized aspects for a sustainable olive oil system are chemical analysis replacement and quality design of the final product. In this context, near infrared spectroscopy (NIRS) can play a pivotal role. Thus, this study aims at comparing performances of different NIRS systems for the prediction of moisture, oil content, soluble solids, total phenolic content, and antioxidant activity of intact olive drupes. The results obtained by a Fourier transform (FT)-NIR spectrometer, equipped with both an integrating sphere and a fiber optic probe, and a Vis/NIR handheld device are discussed. Almost all the partial least squares regression models were encouraging in predicting the quality parameters (0.64 < R2pred < 0.84), with small and comparable biases (p > 0.05). The pair-wise comparison between the standard deviations demonstrated that the FT-NIR models were always similar except for moisture (p < 0.05), whereas a slightly lower performance of the Vis/NIR models was assessed. Summarizing, while on-line or in-line applications of the FT-NIR optical probe should be promoted in oil mills in order to quickly classify the drupes for a better quality design of the olive oil, the portable and cheaper Vis/NIR device could be useful for preliminary quality evaluation of olive drupes directly in the field.
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Affiliation(s)
- Silvia Grassi
- Department of Food, Environmental, and Nutritional Sciences (DeFENS), Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy; (S.G.); (O.S.J.); (E.C.)
| | - Olusola Samuel Jolayemi
- Department of Food, Environmental, and Nutritional Sciences (DeFENS), Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy; (S.G.); (O.S.J.); (E.C.)
| | - Valentina Giovenzana
- Department of Agricultural and Environmental Sciences (DiSAA), Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy; (V.G.); (A.T.)
| | - Alessio Tugnolo
- Department of Agricultural and Environmental Sciences (DiSAA), Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy; (V.G.); (A.T.)
| | - Giacomo Squeo
- Department of Soil Plant and Food Sciences (DiSSPA), Università degli Studi di Bari “Aldo Moro”, Via Amendola 165/A, 70126 Bari, Italy;
| | - Paola Conte
- Department of Agricultural Sciences, Università degli Studi di Sassari, Viale Italia 39/A, 07100 Sassari, Italy;
| | - Alessandra De Bruno
- Department of Agraria, University Mediterranea of Reggio Calabria, Via dell’Università 25, 89124 Reggio Calabria, Italy;
| | - Federica Flamminii
- Faculty of Bioscience and Technology for Agriculture, Food and Environment, University of Teramo, Via Balzarini 1, 64100 Teramo, Italy;
| | - Ernestina Casiraghi
- Department of Food, Environmental, and Nutritional Sciences (DeFENS), Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy; (S.G.); (O.S.J.); (E.C.)
| | - Cristina Alamprese
- Department of Food, Environmental, and Nutritional Sciences (DeFENS), Università degli Studi di Milano, Via G. Celoria 2, 20133 Milan, Italy; (S.G.); (O.S.J.); (E.C.)
- Correspondence: ; Tel.: +39-0250319187
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5
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Oliveira UF, Costa AM, Roque JV, Cardoso W, Motoike SY, Barbosa MHP, Teofilo RF. Predicting oil content in ripe Macaw fruits (Acrocomia aculeata) from unripe ones by near infrared spectroscopy and PLS regression. Food Chem 2021; 351:129314. [PMID: 33647696 DOI: 10.1016/j.foodchem.2021.129314] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 12/28/2020] [Accepted: 02/05/2021] [Indexed: 11/29/2022]
Abstract
A method for early quantification of unripe macaw fruits oil content using near-infrared spectroscopy (NIR) and partial least squares (PLS) is presented. After harvest, the fruit takes about 30 days to reach its maximum oil accumulation. The oil content was quantified thirty days after harvest using Soxhlet extraction. PLS models were built using NIR spectra of shell obtained five days after harvest (Shell5). The Shell5 model was compared with models built using NIR spectra of the shell (Shell30) and mesocarp thirty days after harvest (Pulp30). Ordered predictors selection was used to select the most informative variables. The best models presented root mean square error of prediction and correlation coefficient of prediction of 4.87% and 0.89 for Shell5; 5.83% and 0.85 for Shell30; 4.76% and 0.92 for Pulp30. Thus, the anticipated prediction of oil content could reduce the time and costs of macaw palm quality control and storage.
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Affiliation(s)
- Ulisses F Oliveira
- Multivariate Chemical Data Analysis Laboratory, Department of Chemistry, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
| | - Annanda M Costa
- Campus Ponta Porã, Instituto Federal de Mato Grosso do Sul, 79100-510 Campo Grande, MS, Brazil
| | - Jussara V Roque
- Multivariate Chemical Data Analysis Laboratory, Department of Chemistry, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
| | - Wilson Cardoso
- Multivariate Chemical Data Analysis Laboratory, Department of Chemistry, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
| | - Sergio Y Motoike
- Department of Agronomy, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
| | - Marcio H P Barbosa
- Department of Agronomy, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
| | - Reinaldo F Teofilo
- Multivariate Chemical Data Analysis Laboratory, Department of Chemistry, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
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6
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Wang Q, Xing H, Liu X, Mao L, Wei Z, Zhang H, Wang L, Wang H, Saeed M, Zhang G, Song X, Sun X, Yuan Y. Estimation of Protein and Fatty Acid Composition in Shell‐Intact Cottonseed by Near Infrared Reflectance Spectroscopy. J AM OIL CHEM SOC 2020. [DOI: 10.1002/aocs.12312] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Qingkang Wang
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Huixian Xing
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Xiangliu Liu
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Lili Mao
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Ze Wei
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Haijun Zhang
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Liyuan Wang
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Haoran Wang
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Muhammad Saeed
- Department of BotanyGovernment College University Faisalabad 38000 Pakistan
| | - Guihua Zhang
- Heze Academy of Agricultural Sciences Heze 274000 China
| | - Xianliang Song
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Xue‐Zhen Sun
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
| | - Yanchao Yuan
- State Key Laboratory of Crop Biology/Agronomy CollegeShandong Agricultural University Taian 271018 China
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7
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Lee C, Polari JJ, Kramer KE, Wang SC. Near-Infrared (NIR) Spectrometry as a Fast and Reliable Tool for Fat and Moisture Analyses in Olives. ACS OMEGA 2018; 3:16081-16088. [PMID: 30556025 PMCID: PMC6288806 DOI: 10.1021/acsomega.8b02491] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2018] [Accepted: 11/08/2018] [Indexed: 06/09/2023]
Abstract
The evaluation of fat and moisture contents for olive fruits is crucial for both olive growers and olive oil processors. Reference methods, such as Soxhlet extraction, used for fat content determination in olive fruits are time- and solvent- consuming and labor intensive. Near-infrared (NIR) spectroscopy is proposed as a solution toward rapid and nondestructive analyses of olive fruit fat and moisture contents. In the present work, comparative studies of the fat and moisture quantification methods were performed on four cultivars (Arbosana, Arbequina, Chiquitita, and Koroneiki) during six different harvesting time points to determine the potential of NIR as an alternative methodology. The impact of olive paste crushing degree on NIR performance was also investigated using three different grid sizes (4, 6, and 8 mm) on a hammer mill, in addition to a blade crusher. Results indicate a satisfactory correlation between the reference Soxhlet and NIR methods with R 2 = 0.995. A comparison study of moisture content was also done on NIR and the use of conventional oven with the R 2 value of 0.995. The crushing blade produced higher values in both moisture and fat contents in comparison to the hammer mill. The evaluation indicates that when building a chemometric model, all crush sizes and blade sizes should be represented in the model for highest accuracy.
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Affiliation(s)
- Chiaohwei Lee
- Department
of Chemistry, Department of Food
Science and Technology, and Olive Center, University
of California, Davis, California 95616, United States
| | - Juan J. Polari
- Department
of Chemistry, Department of Food
Science and Technology, and Olive Center, University
of California, Davis, California 95616, United States
| | | | - Selina C. Wang
- Department
of Chemistry, Department of Food
Science and Technology, and Olive Center, University
of California, Davis, California 95616, United States
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