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Ragunathan V, Chithra K, Shivanika C, Sudharsan MS. Modelling and targeting mitochondrial protein tyrosine phosphatase 1: a computational approach. In Silico Pharmacol 2022; 10:3. [PMID: 35111562 PMCID: PMC8762535 DOI: 10.1007/s40203-022-00119-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 01/03/2022] [Indexed: 01/19/2023] Open
Abstract
The present research scintillates on the homology modelling of rat mitochondrial protein tyrosine phosphatase 1 (PTPMT1) and targeting its activity using flavonoids through a computational docking approach. PTPMT1 is a dual-specificity phosphatase responsible for protein phosphorylation and plays a vital role in the metabolism of cardiolipin biosynthesis, insulin regulation, etc. The inhibition of PTPMT1 has also shown enhanced insulin levels. The three-dimensional structure of the protein is not yet known. The homology modelling was performed using SWISS-MODEL and Geno3D webservers to compare the efficiencies. The PROCHECK for protein modelled using SWISS-MODEL showed 91.6% of amino acids in the most favoured region, 0.7% residues in the disallowed region that was found to be significant compared to the model built using Geno3D. 210 common flavonoids were docked in the modelled protein using the AutoDock 4.2.6 along with a control drug alexidine dihydrochloride. Our results show promising candidates that bind protein tyrosine phosphatase 1, including, prunin (- 8.66 kcal/mol); oroxindin (- 8.56 kcal/mol); luteolin 7-rutinoside (- 8.47 kcal/mol); 3(2H)-isoflavenes (- 8.36 kcal/mol); nicotiflorin (- 8.29 kcal/mol), ranked top in the docking experiments. We predicted the pharmacokinetic and Lipinski properties of the top ten compounds with the lowest binding energies. To further validate the stability of the modelled protein and docked complexes molecular dynamics simulations were performed using Desmond, Schrodinger for 150 ns in conjunction with MM-GBSA. Thus, flavonoids could act as potential inhibitors of PTPMT1, and further, in-vitro and in-vivo studies are essential to complete the drug development process.
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Affiliation(s)
- Venkataraghavan Ragunathan
- grid.252262.30000 0001 0613 6919Nanomaterials and Environmental Research Laboratory, Department of Chemical Engineering, Alagappa College of Technology, Anna University, Chennai, 600025 India
| | - K. Chithra
- grid.252262.30000 0001 0613 6919Nanomaterials and Environmental Research Laboratory, Department of Chemical Engineering, Alagappa College of Technology, Anna University, Chennai, 600025 India
| | - C. Shivanika
- grid.412813.d0000 0001 0687 4946Department of Biotechnology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore Campus, Vellore, Tamil Nadu 632014 India
| | - Meenambiga Setti Sudharsan
- grid.412815.b0000 0004 1760 6324Department of Bioengineering, School of Engineering, Vels Institute of Science Technology and Advanced Studies, Pallavaram, Chennai, 600117 India
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Gong Y, Huang XY, Pei D, Duan WD, Zhang X, Sun X, Di DL. The applicability of high-speed counter current chromatography to the separation of natural antioxidants. J Chromatogr A 2020; 1623:461150. [PMID: 32505270 DOI: 10.1016/j.chroma.2020.461150] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Revised: 04/01/2020] [Accepted: 04/18/2020] [Indexed: 01/10/2023]
Abstract
Antioxidants play an essential role in human health, as they have been found to be capable of lowering the incidence of many diseases, such as cancer and angiocardiopathy. Currently, more attention is paid to natural antioxidants because of the possible insecurity of synthetic antioxidants. Thus, the development of efficient techniques or methods to separate antioxidants from natural sources is requested urgently. High-speed counter current chromatography (HSCCC) is a unique support-free liquid-liquid chromatographic technique and has been widely applied in the field of separation of natural products. In this review, we summarize and analyze the related researches on the application of HSCCC in the separation of various natural antioxidants so far. The purpose of the article is to provide a certain theoretical support for the separation of natural antioxidants by HSCCC, and to make full use of advantages of HSCCC in the separation of bioactive components. In particular, some key problems associated with the separation strategies, the structural categories of natural antioxidants, solvent system choices, and the application of different elution modes in HSCCC separation, are summarized and commented. We expect that the content reviewed can offer more evidence for the development of the field of natural antioxidants separation, so as to achieve large-scale preparation of natural antioxidants.
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Affiliation(s)
- Yuan Gong
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China; University of Chinese Academy of Sciences, Beijing, 100049, P.R. China
| | - Xin-Yi Huang
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China.
| | - Dong Pei
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China; Center of Resource Chemical and New Material, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Qingdao, P.R. China
| | - Wen-Da Duan
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China; University of Chinese Academy of Sciences, Beijing, 100049, P.R. China
| | - Xia Zhang
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China; University of Chinese Academy of Sciences, Beijing, 100049, P.R. China
| | - Xiao Sun
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China; University of Chinese Academy of Sciences, Beijing, 100049, P.R. China
| | - Duo-Long Di
- CAS Key Laboratory of Chemistry of Northwestern Plant Resources and Key Laboratory for Natural Medicine of Gansu Province, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Lanzhou 730000, P.R. China.
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Spórna‐Kucab A, Kumorkiewicz A, Szmyr N, Szneler E, Wybraniec S. Separation of betacyanins from flowers of
Amaranthus cruentus
L. in a polar solvent system by high‐speed counter‐current chromatography. J Sep Sci 2019; 42:1676-1685. [DOI: 10.1002/jssc.201801172] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2018] [Revised: 02/11/2019] [Accepted: 02/17/2019] [Indexed: 12/19/2022]
Affiliation(s)
- Aneta Spórna‐Kucab
- Department of Analytical ChemistryInstitute C‐1Faculty of Chemical Engineering and TechnologyCracow University of Technology Cracow Poland
| | - Agnieszka Kumorkiewicz
- Department of Analytical ChemistryInstitute C‐1Faculty of Chemical Engineering and TechnologyCracow University of Technology Cracow Poland
| | - Natalia Szmyr
- Department of Analytical ChemistryInstitute C‐1Faculty of Chemical Engineering and TechnologyCracow University of Technology Cracow Poland
| | - Edward Szneler
- Department of ChemistryJagiellonian University Cracow Poland
| | - Sławomir Wybraniec
- Department of Analytical ChemistryInstitute C‐1Faculty of Chemical Engineering and TechnologyCracow University of Technology Cracow Poland
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Zhang M, Zhao R, Zhou S, Liu W, Liang Y, Zhao Z, Li S, Wang X, Wong T, Zhao H. Chemical characterization and evaluation of the antioxidants in Chaenomeles fruits by an improved HPLC-TOF/MS coupled to an on-line DPPH-HPLC method. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART C, ENVIRONMENTAL CARCINOGENESIS & ECOTOXICOLOGY REVIEWS 2018; 36:43-62. [PMID: 29336723 DOI: 10.1080/10590501.2017.1418814] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
An improved method based on HPLC-TOF/MS was developed to catalog the antioxidants in five species of Chaenomeles (Mugua). Forty-four fractions from the Mugua extracts show appreciable levels of antioxidative activity in scavenging the stable free-radical 2,2-diphenyl-1-picrylhydrazyl and the hydroxyl radicals. Twelve major antioxidant's chemical structures are identified. Antioxidant activities differ between species, but intra-species level of antioxidants, regardless of their ripeness, are similar. C. sinensis has the highest antioxidant level. A rigorous quality control procedure was implemented to ensure accuracy of antioxidant quantification. This improved procedure can be used for rapid discovery of antioxidants in other plant extracts.
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Affiliation(s)
- Minmin Zhang
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
| | - Ruixuan Zhao
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
| | - Siduo Zhou
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
- b College of Food Science and Technology, Nanjing Agricultural University , Nanjing , P. R. China
| | - Wei Liu
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
| | - Yan Liang
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
| | - Zhiguo Zhao
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
| | - Shengbo Li
- c Shandong Yate Eco-tech Co. LTD. , Linyi , P. R. China
| | - Xiao Wang
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
| | - Tityee Wong
- d Department of Biological Sciences , University of Memphis , Tennessee , USA
| | - Hengqiang Zhao
- a Shandong Key Laboratory of TCM Quality Control Technology, Shandong Analysis and Test Center, Qilu University Of Technology (Shandong Academy of Sciences) , Jinan , P. R. China
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Gullón B, Lú-Chau TA, Moreira MT, Lema JM, Eibes G. Rutin: A review on extraction, identification and purification methods, biological activities and approaches to enhance its bioavailability. Trends Food Sci Technol 2017. [DOI: 10.1016/j.tifs.2017.07.008] [Citation(s) in RCA: 169] [Impact Index Per Article: 24.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Orfali GDC, Duarte AC, Bonadio V, Martinez NP, de Araújo MEMB, Priviero FBM, Carvalho PO, Priolli DG. Review of anticancer mechanisms of isoquercitin. World J Clin Oncol 2016; 7:189-199. [PMID: 27081641 PMCID: PMC4826964 DOI: 10.5306/wjco.v7.i2.189] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/28/2015] [Revised: 10/19/2015] [Accepted: 02/16/2016] [Indexed: 02/06/2023] Open
Abstract
This review was based on a literature search of PubMed and Scielo databases using the keywords “quercetin, rutin, isoquercitrin, isoquercitin (IQ), quercetin-3-glucoside, bioavailability, flavonols and favonoids, and cancer” and combinations of all the words. We collected relevant scientific publications from 1990 to 2015 about the absorption, bioavailability, chemoprevention activity, and treatment effects as well as the underlying anticancer mechanisms of isoquercitin. Flavonoids are a group of polyphenolic compounds widely distributed throughout the plant kingdom. The subclass of flavonols receives special attention owing to their health benefits. The main components of this class are quercetin, rutin, and IQ, which is a flavonoid and although mostly found as a glycoside, is an aglycone (lacks a glycoside side chain). This compound presents similar therapeutic profiles to quercetin but with superior bioavailability, resulting in increased efficacy compared to the aglycone form. IQ has therapeutic applications owing to its wide range of pharmacological effects including antioxidant, antiproliferative, anti-inflammatory, anti-hypertensive, and anti-diabetic. The protective effects of IQ in cancer may be due to actions on lipid peroxidation. In addition, the antitumor effect of IQ and its underlying mechanism are related to interactions with Wnt signaling pathway, mixed-lineage protein kinase 3, mitogen-activated protein kinase, apoptotic pathways, as well proinflammatory protein signaling. This review contributed to clarifying the mechanisms of absorption, metabolism, and actions of IQ and isoquercitrin in cancer.
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Zeng H, Liu Q, Wang M, Jiang S, Zhang L, He X, Wang J, Chen X. Target-guided separation of antioxidants from Semen cassia via off-line two-dimensional high-speed counter-current chromatography combined with complexation and extrusion elution mode. J Chromatogr B Analyt Technol Biomed Life Sci 2015; 1001:58-65. [PMID: 26255697 DOI: 10.1016/j.jchromb.2015.07.046] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Revised: 07/22/2015] [Accepted: 07/24/2015] [Indexed: 12/24/2022]
Affiliation(s)
- Hualiang Zeng
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China
| | - Qi Liu
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China; Division of Physical Biology & Bioimaging Center, Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Meiling Wang
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China
| | - Shujing Jiang
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China
| | - Li Zhang
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China
| | - Xi He
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China
| | - Jun Wang
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China
| | - Xiaoqing Chen
- College of Chemistry and Chemical Engineering, Central South University, Changsha 410083, China; Collaborative Innovation Center of Resource-conserving & Environment-friendly Society and Ecological Civilization, Changsha 410083, China.
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Zhao M, Liang Z, Xie Z, Yang D, Xu X. Separation and Purification of 15-Demethylplumieride, Cerberic Acid B, and Kaempferol-3-Rutinoside from Plumeria Rubra‘Acutifolia’ by High-Speed Counter-Current Chromatography. SEP SCI TECHNOL 2015. [DOI: 10.1080/01496395.2015.1056357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Inoue K, Tanada C, Nishikawa H, Matsuda S, Tada A, Ito Y, Min JZ, Todoroki K, Sugimoto N, Toyo'oka T, Akiyama H. Evaluation of gardenia yellow using crocetin from alkaline hydrolysis based on ultra high performance liquid chromatography and high-speed countercurrent chromatography. J Sep Sci 2014; 37:3619-24. [DOI: 10.1002/jssc.201400793] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Revised: 09/18/2014] [Accepted: 09/29/2014] [Indexed: 12/11/2022]
Affiliation(s)
- Koichi Inoue
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
| | - Chihiro Tanada
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
| | - Hiroaki Nishikawa
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
| | | | - Atsuko Tada
- National Institute of Health Sciences; Tokyo Japan
| | - Yusai Ito
- National Institute of Health Sciences; Tokyo Japan
- Department of Food Science and Nutrition; Faculty of Home Economics; Kyoritsu Women's University; Tokyo Japan
| | - Jun Zhe Min
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
| | - Kenichiro Todoroki
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
| | - Naoki Sugimoto
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
| | - Toshimasa Toyo'oka
- Laboratory of Analytical and Bio-Analytical Chemistry; School of Pharmaceutical Sciences; University of Shizuoka; Shizuoka Japan
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Liang Z, Xie Z, Lam S, Xu X. Optimization of the fractional precipitation of paclitaxel from aTaxus chinensiscell culture using response surface methodology and its isolation by consecutive high-speed countercurrent chromatography. J Sep Sci 2014; 37:2322-30. [DOI: 10.1002/jssc.201400420] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2014] [Revised: 05/14/2014] [Accepted: 06/08/2014] [Indexed: 11/11/2022]
Affiliation(s)
- Zhikun Liang
- School of Pharmaceutical Sciences; Sun Yat-Sen University; Guangzhou China
- Guangdong Technology Research Centre for Advanced Chinese Medicine; Guangzhou China
| | - Zhisheng Xie
- School of Pharmaceutical Sciences; Sun Yat-Sen University; Guangzhou China
- Guangdong Technology Research Centre for Advanced Chinese Medicine; Guangzhou China
| | - Shingchung Lam
- School of Pharmaceutical Sciences; Sun Yat-Sen University; Guangzhou China
- Guangdong Technology Research Centre for Advanced Chinese Medicine; Guangzhou China
| | - Xinjun Xu
- School of Pharmaceutical Sciences; Sun Yat-Sen University; Guangzhou China
- Guangdong Technology Research Centre for Advanced Chinese Medicine; Guangzhou China
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