1
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Liang Y, Zhang L, Zhang Y. Chromatographic separation of peptides and proteins for characterization of proteomes. Chem Commun (Camb) 2023; 59:270-281. [PMID: 36504223 DOI: 10.1039/d2cc05568f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
Characterization of proteomes aims to comprehensively characterize proteins in cells or tissues via two main strategies: (1) bottom-up strategy based on the separation and identification of enzymatic peptides; (2) top-down strategy based on the separation and identification of intact proteins. However, it is challenged by the high complexity of proteomes. Consequently, the improvements in peptide and protein separation technologies for simplifying the sample should be critical. In this feature article, separation columns for peptide and protein separation were introduced, and peptide separation technologies for bottom-up proteomic analysis as well as protein separation technologies for top-down proteomic analysis were summarized. The achievement, recent development, limitation and future trends are discussed. Besides, the outlook on challenges and future directions of chromatographic separation in the field of proteomics was also presented.
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Affiliation(s)
- Yu Liang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Lihua Zhang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Yukui Zhang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
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2
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Advancements in the preparation and application of monolithic silica columns for efficient separation in liquid chromatography. Talanta 2021; 224:121777. [PMID: 33379011 DOI: 10.1016/j.talanta.2020.121777] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 10/11/2020] [Accepted: 10/12/2020] [Indexed: 01/23/2023]
Abstract
Fast and efficient separation remains a big challenge in high performance liquid chromatography (HPLC). The need for higher efficiency and resolution in separation is constantly in demand. To achieve that, columns developed are rapidly moving towards having smaller particle sizes and internal diameters (i.d.). However, these parameters will lead to high back-pressure in the system and will burden the pumps of the HPLC instrument. To address this limitation, monolithic columns, especially silica-based monolithic columns have been introduced. These columns are being widely investigated for fast and efficient separation of a wide range of molecules. The present article describes the current methods developed to enhance the column efficiency of particle packed columns and how silica monolithic columns can act as an alternative in overcoming the low permeability of particle packed columns. The fundamental processes behind the fabrication of the monolith including the starting materials and the silica sol-gel process will be discussed. Different monolith derivatization and end-capping processes will be further elaborated and followed by highlights of the performance such monolithic columns in key applications in different fields with various types of matrices.
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3
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Cruz JC, Miranda LFC, Queiroz MEC. Pipette tip micro-solid phase extraction (octyl-functionalized hybrid silica monolith) and ultra-high-performance liquid chromatography-tandem mass spectrometry to determine cannabidiol and tetrahydrocannabinol in plasma samples. J Sep Sci 2021; 44:1621-1632. [PMID: 33387419 DOI: 10.1002/jssc.202000906] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 12/25/2020] [Accepted: 12/30/2020] [Indexed: 11/08/2022]
Abstract
This manuscript describes the development of an innovative method to determine cannabinoids (cannabidiol and tetrahydrocannabinol) in human plasma samples by pipette tip micro-solid phase extraction and liquid chromatography-mass spectrometry/mass spectromtery. An octyl-functionalized hybrid silica monolith, which had been synthesized and characterized, was used as a selective stationary phase. The octyl-functionalized hybrid silica monoliths presented high permeability and adequate mechanical strength. The micro-solid phase extraction variables (sample pH, draw-eject cycles, solvent for phase clean-up, and desorption conditions) were investigated to improve not only the selectivity but also the sorption capacity. The method was linear at concentrations ranging from the lower limit of quantification (10.00 ng/mL) to the upper limit of quantification (150.0 ng/mL). The lack of fit and homoscedasticity tests, as well as the determination coefficients (r2 greater than 0.995), certified that linearity was adequate. The precision assays presented coefficient of variation values lower than 15%, and the accuracy tests provided relative error values ranging from 3.2 to 14%. Neither significant carry-over nor matrix effects were detected. Therefore, the pipette tip micro-solid phase extraction/liquid chromatography-mass spectrometry/mass spectrometry method has demonstrated to be adequate to determine cannabidiol and tetrahydrocannabinol simultaneously in plasma samples for therapeutic drug monitoring of patients undergoing treatment with cannabinoids.
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Affiliation(s)
- Jonas Carneiro Cruz
- Departamento de Química, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Luís Felippe Cabral Miranda
- Departamento de Química, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Maria Eugênia Costa Queiroz
- Departamento de Química, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil
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4
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Huo Z, Chen L. Base‐deactivated and alkaline‐resistant chromatographic stationary phase based on functionalized polymethylsilsesquioxane microspheres. J Sep Sci 2019; 43:389-397. [DOI: 10.1002/jssc.201900634] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2019] [Revised: 10/14/2019] [Accepted: 10/15/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Zhixia Huo
- School of Pharmaceutical Science & TechnologyTianjin University Tianjin P. R. China
| | - Lei Chen
- School of Pharmaceutical Science & TechnologyTianjin University Tianjin P. R. China
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Zajickova Z, Špánik I. Applications of monolithic columns in gas chromatography and supercritical fluid chromatography. J Sep Sci 2019; 42:999-1011. [DOI: 10.1002/jssc.201801071] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 12/10/2018] [Accepted: 12/13/2018] [Indexed: 11/10/2022]
Affiliation(s)
- Zuzana Zajickova
- Department of Physical Sciences; Barry University; Miami Shores FL USA
| | - Ivan Špánik
- Institute of Analytical Chemistry; Faculty of Chemical and Food Technology; Slovak University of Technology; Bratislava Slovakia
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6
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Abstract
Nano liquid chromatography (nanoLC), with columns having an inner diameter (ID) of ≤100 μm, can provide enhanced sensitivity and enable analysis of limited samples.
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Affiliation(s)
- Steven Ray Wilson
- Department of Chemistry
- University of Oslo
- Oslo
- Norway
- Hybrid Technology Hub-Centre of Excellence
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7
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Chi J, Chen M, Deng L, Lin X, Xie Z. A facile AuNPs@aptamer-modified mercaptosiloxane-based hybrid affinity monolith with an unusually high coverage density of aptamer for on-column selective extraction of ochratoxin A. Analyst 2018; 143:5210-5217. [PMID: 30270376 DOI: 10.1039/c8an01531g] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
A convenient and high-performance AuNPs@aptamer-modified mercaptosiloxane-based hybrid affinity monolithic column with an unusually high coverage density of aptamers was facilely prepared and used for on-column selective recognition of ochratoxin A (OTA). Due to the high surface-to-volume ratio of AuNPs, the robust conjugation of Au-SH and large specific surface area of hybrid-silica monolith, high coverage density of 5'-SH-aptamers up to 3494 pmol μL-1 was achieved, which was 2.5-10 folds higher than that of other previously reported affinity monoliths modified with AuNPs@Apt. Using OTA as the model analyte, the highly selective recognition of OTA was carried out via online coupling with HPLC, and the cross-reactivity towards analogues, such as OTB and aflatoxin B1, was weak. High recovery yields of OTA were achieved at more than 92% (n = 3) even when OTB was added at a high concentration level up to 50 ng mL-1. For sample analysis, efficient discrimination of OTA was successfully obtained with a sensitive detection limit of 25 pg mL-1. The recoveries of OTA with different fortified levels were achieved at 88.6%-94.1% and 88.2%-94.3% for beer and wine samples, respectively. This protocol provides a facile approach for fabricating a desirable affinity monolith modified with abundant aptamers for highly selective and sensitive on-column extraction of target analyte OTA.
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Affiliation(s)
- Jinxin Chi
- Institute of Food Safety and Environment Monitoring, Fuzhou University, Fuzhou, 350108, China.
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8
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Wu C, Liang Y, Liang Z, Zhang L, Zhang Y. Ethane-bridged hybrid monoliths with well-defined mesoporosity and great stability for high-performance peptide separation. Anal Chim Acta 2018; 1019:128-134. [DOI: 10.1016/j.aca.2018.02.033] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Revised: 02/03/2018] [Accepted: 02/10/2018] [Indexed: 10/18/2022]
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9
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Maniquet A, Bruyer N, Raffin G, Baco-Antionali F, Demesmay C, Dugas V, Randon J. Behavior of macroporous vinyl silica and silica monolithic columns in high pressure gas chromatography. J Chromatogr A 2017; 1504:105-111. [DOI: 10.1016/j.chroma.2017.05.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 04/27/2017] [Accepted: 05/02/2017] [Indexed: 12/01/2022]
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10
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Ma J, Dai Q, Li X, Zhu X, Ma T, Qiao X, Shen S, Liu X. Dipentaerythritol penta-/hexa-acrylate based-highly cross-linked hybrid monolithic column: Preparation and its applications for ultrahigh efficiency separation of proteins. Anal Chim Acta 2017; 963:143-152. [DOI: 10.1016/j.aca.2017.01.057] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 01/21/2017] [Accepted: 01/23/2017] [Indexed: 12/16/2022]
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11
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Qiao X, Zhang N, Han M, Li X, Qin X, Shen S. Periodic imidazolium-bridged hybrid monolith for high-efficiency capillary liquid chromatography with enhanced selectivity. J Sep Sci 2017; 40:1024-1031. [DOI: 10.1002/jssc.201601014] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Revised: 12/04/2016] [Accepted: 12/05/2016] [Indexed: 01/20/2023]
Affiliation(s)
- Xiaoqiang Qiao
- College of Pharmaceutical Sciences; Key Laboratory of Medicinal Chemistry and Molecular Diagnosis; Ministry of Education; Hebei University; Baoding China
| | - Niu Zhang
- College of Pharmaceutical Sciences; Key Laboratory of Medicinal Chemistry and Molecular Diagnosis; Ministry of Education; Hebei University; Baoding China
| | - Manman Han
- College of Pharmaceutical Sciences; Key Laboratory of Medicinal Chemistry and Molecular Diagnosis; Ministry of Education; Hebei University; Baoding China
| | - Xueyun Li
- College of Pharmaceutical Sciences; Key Laboratory of Medicinal Chemistry and Molecular Diagnosis; Ministry of Education; Hebei University; Baoding China
| | - Xinying Qin
- Chemical Biology Key Laboratory of Hebei Province; College of Chemistry & Environmental Science; Hebei University; Baoding China
| | - Shigang Shen
- College of Chemistry & Environmental Science; Hebei University; Baoding China
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12
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Zajickova Z. Advances in the development and applications of organic–silica hybrid monoliths. J Sep Sci 2016; 40:25-48. [DOI: 10.1002/jssc.201600774] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 08/11/2016] [Accepted: 09/04/2016] [Indexed: 12/12/2022]
Affiliation(s)
- Zuzana Zajickova
- Department of Physical Sciences Barry University Miami Shores FL USA
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13
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Kobayashi A, Nakaza T, Hirano T, Kitagawa S, Ohtani H. Variation in the chromatographic, material, and chemical characteristics of methacrylate-based polymer monoliths during photoinitiated low-temperature polymerization. J Sep Sci 2016; 39:2459-65. [DOI: 10.1002/jssc.201600344] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Revised: 04/18/2016] [Accepted: 04/20/2016] [Indexed: 01/28/2023]
Affiliation(s)
- Ayumi Kobayashi
- Department of Materials Science and Engineering, Graduate School of Engineering; Nagoya Institute of Technology, Gokiso; Showa Nagoya Japan
| | - Takuya Nakaza
- Department of Materials Science and Engineering, Graduate School of Engineering; Nagoya Institute of Technology, Gokiso; Showa Nagoya Japan
| | - Tomohiko Hirano
- Department of Materials Science and Engineering, Graduate School of Engineering; Nagoya Institute of Technology, Gokiso; Showa Nagoya Japan
| | - Shinya Kitagawa
- Department of Materials Science and Engineering, Graduate School of Engineering; Nagoya Institute of Technology, Gokiso; Showa Nagoya Japan
| | - Hajime Ohtani
- Department of Materials Science and Engineering, Graduate School of Engineering; Nagoya Institute of Technology, Gokiso; Showa Nagoya Japan
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