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Jorbenadze S, Sprega G, Chelidze A, Sechi B, Dallocchio R, Chankvetadze B, Di Marzo V, Villano R, Peluso P. First separation of commendamide enantiomers. J Pharm Biomed Anal 2024; 255:116643. [PMID: 39700865 DOI: 10.1016/j.jpba.2024.116643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Revised: 12/10/2024] [Accepted: 12/15/2024] [Indexed: 12/21/2024]
Abstract
N-(3-hydroxyacyl)glycines are compounds of remarkable interest due to their biogenic origin and bioactivity and as precursors of the corresponding 3-acyloxy derivatives which represent an important class of bioactive products of bacterial origin. Commendamide [N-(3-hydroxypalmitoyl)glycine] (1) is a gut microbiota-derived bioactive metabolite that is structurally like endogenous long-chain N-acyl-amino acids belonging to the endocannabinoidome, a complex lipid signaling system involved in several aspects of mammalian physiology and pathology. Thanks to this structural similarity, this compound and its analogues, like the N-(3-hydroxymyristoyl)glycine 2, exert a remarkable bioactivity in mammals, for instance, through activation of G-protein-coupled receptors (GPCRs). N-(3-Hydroxyacyl)glycines are chiral and the availability of their pure enantiomers may bring light to possible enantioselective pathways within the biological processes which these compounds are involved in. A sustainable synthesis of rac-1 and its analogues was recently reported, but asymmetric synthesis and enantioseparation methods to access their pure or enriched enantiomers were not reported so far. In this paper, we report the first direct separation of commendamide enantiomers by using enantioselective high-performance liquid chromatography (HPLC) with polysaccharide-based chiral columns, aqueous-organic mixtures as mobile phases and either electrospray ionization mass spectrometry (ESI-MS) or UV detection. Optimal enantioseparation was obtained by using an amylose tris(3,5-dimethylphenylcarbamate)-based chiral column and acetonitrile/water 60:40 (v/v) (0.1 % acetic acid) as mobile phase. By adopting the same method, the enantioseparation of the analogue 2 was also performed. The molecular bases of the higher retention and selectivity observed for the N-(3-hydroxyacyl)glycine 1 compared to the analogue 2 were explored by computational analysis.
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Affiliation(s)
- Saba Jorbenadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, Tbilisi 0179, Georgia
| | - Giorgia Sprega
- Department of Excellence-Biomedical Sciences and Public Health, Università Politecnica delle Marche, Ancona 60121, Italy
| | - Aluda Chelidze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, Tbilisi 0179, Georgia
| | - Barbara Sechi
- Institute of Biomolecular Chemistry ICB, CNR, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari 07100, Italy
| | - Roberto Dallocchio
- Institute of Biomolecular Chemistry ICB, CNR, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari 07100, Italy
| | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, Tbilisi 0179, Georgia
| | - Vincenzo Di Marzo
- Institute of Biomolecular Chemistry ICB, CNR, Via Campi Flegrei 34, Pozzuoli, NA 80078, Italy; Canada Excellence Research Chair on the Microbiome-Endocannabinoidome Axis in Metabolic Health, Faculty of Medicine and Faculty of Agricultural and Food Sciences, Centre NUTRISS, Centre de Recherche de l'Institut de Cardiologie et Pneumologie de l'Université et Institut sur la Nutrition et les Aliments Fonctionnels, Université Laval, Quebec City, QC, Canada
| | - Rosaria Villano
- Institute of Biomolecular Chemistry ICB, CNR, Via Campi Flegrei 34, Pozzuoli, NA 80078, Italy.
| | - Paola Peluso
- Institute of Biomolecular Chemistry ICB, CNR, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari 07100, Italy.
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2
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Ghinet A, Furman C, Zubaş A, Apostol G, Nica AS, Lipka E. Evaluation of various polysaccharide-based stationary phases for enantioseparation of chloro-containing derivatives in normal phase liquid chromatography. Biomed Chromatogr 2024; 38:e6020. [PMID: 39349358 DOI: 10.1002/bmc.6020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Revised: 09/04/2024] [Accepted: 09/10/2024] [Indexed: 10/02/2024]
Abstract
Six polysaccharide-based chiral stationary phases were screened to separate the enantiomers of six chloro-containing derivatives and one derivative bearing electron donating mesomeric substituents, chosen for comparison. These compounds are expected to be P2X7 receptor antagonists with potential anti-inflammatory activity. The study was carried out with four different mobile phases composed of n-heptane and ethanol or isopropanol. Thus, a total of 168 experiments were implemented to find the best conditions aimed at scaling-up the separation of these anti-inflammatory compounds. Chiralpak AD-H separated half of them, i.e., 1, 2, and 6; Chiralpak AS separated also three out of the six compounds, i.e., 1, 2, and 3; Lux Cellulose-5 separated 2, 4, and 6; Lux Cellulose-2 separated 1, 2, and 4; Chiralcel OD-H separated compounds 2 and 5; and finally Chiralcel OJ separated only 3, thus having the lowest rate of success. Additionally, the influence of (i) the stationary and mobile phases and (ii) the chemical structure of the analytes on retention and resolution was investigated.
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Affiliation(s)
- Alina Ghinet
- Univ. Lille, Inserm, RID-AGE U1167, Lille, France
- Health and Environment, Laboratory of Sustainable Chemistry and Health, JUNIA, Lille, France
- Faculty of Chemistry, 'Alexandru Ioan Cuza' University of Iasi, Iasi, Romania
| | - Christophe Furman
- Univ. Lille, Inserm, RID-AGE U1167, Lille, France
- Laboratoire de Pharmacobiochimie, UFR3S-Pharmacie, Lille, BP, France
| | - Andreea Zubaş
- Univ. Lille, Inserm, RID-AGE U1167, Lille, France
- Health and Environment, Laboratory of Sustainable Chemistry and Health, JUNIA, Lille, France
- Faculty of Chemistry, 'Alexandru Ioan Cuza' University of Iasi, Iasi, Romania
| | - Georgiana Apostol
- Univ. Lille, Inserm, RID-AGE U1167, Lille, France
- Health and Environment, Laboratory of Sustainable Chemistry and Health, JUNIA, Lille, France
- Faculty of Chemistry, 'Alexandru Ioan Cuza' University of Iasi, Iasi, Romania
| | - Adrian Sorin Nica
- Univ. Lille, Inserm, RID-AGE U1167, Lille, France
- Health and Environment, Laboratory of Sustainable Chemistry and Health, JUNIA, Lille, France
| | - Emmanuelle Lipka
- Univ. Lille, Inserm, RID-AGE U1167, Lille, France
- Laboratoire de Chimie Analytique, UFR3S-Pharmacie, Lille, BP, France
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3
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Sechi B, Tsetskhladze N, Connell L, Dessì A, Dallocchio R, Chankvetadze B, Cossu S, Khatiashvili T, Mamane V, Peluso P. Unravelling dispersion forces in liquid-phase enantioseparation. Part II: Planar chiral 1-(iodoethynyl)-3-arylferrocenes. Anal Chim Acta 2024; 1327:343160. [PMID: 39266063 DOI: 10.1016/j.aca.2024.343160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 07/28/2024] [Accepted: 08/26/2024] [Indexed: 09/14/2024]
Abstract
BACKGROUND In the first part of our study on possible contribution of dispersion forces in liquid-phase enantioseparations, the enantioseparation of the axially chiral 3,3'-dibromo-5,5'-bis-ferrocenylethynyl-4,4'-bipyridine with an amylose tris(3,5-dimethylphenylcarbamate)-based chiral column appeared reasonably consistent with a picture of the enantioselective recognition based on the interplay between hydrogen bond (HB), π-π stacking and dispersion interactions. RESULTS In the second part of this study, we evaluated the impact of analyte and chiral stationary phase (CSP) structure, mobile phase and temperature on the enantioseparations of planar chiral 1-(iodoethynyl)-3-arylferrocenes (3-aryl = phenyl, 2-naphthyl, 4-methylphenyl, 4-t-butylphenyl) with polysaccharide-based chiral columns. The main aim of the present study was to understand the molecular bases of the high affinity observed for the second eluted (Rp)-enantiomer of some of these analytes toward amylose phenylcarbamate-based selectors when methanol-containing mixtures were used as mobile phases. Significantly, higher affinity of the second eluted (Rp)-enantiomer toward the selector could be also observed for the sterically hindered 1-(iodoethynyl)-3-(4-t-butylphenyl)ferrocene (k2 = 6.21) compared to the smaller 1-(iodoethynyl)-3-(4-methylphenyl)ferrocenes (k2 = 4.07) as 2.5% methanol was added to the n-hexane-based mobile phase. SIGNIFICANCE This study reasonably showed that the contribution of dispersion forces may explain the unusually large retention of the second eluted enantiomers observed for the enantioseparation of some planar chiral 1-(iodoethynyl)-3-arylferrocenes with amylose-based selectors. Based on the obtained results, we can conclude that in liquid-phase enantioseparation steric repulsion can be turned into attraction depending on the features of analyte, selector, and mobile phase.
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Affiliation(s)
- Barbara Sechi
- Istituto di Chimica Biomolecolare ICB-CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100, Sassari, Italy
| | - Nutsa Tsetskhladze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, 0179, Tbilisi, Georgia
| | - Luke Connell
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe CLIC, 1 rue Blaise Pascal, 67008, Strasbourg Cedex, France
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB-CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100, Sassari, Italy
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB-CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100, Sassari, Italy
| | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, 0179, Tbilisi, Georgia
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari Venezia, Via Torino 155, I-30172, Mestre Venezia, Italy
| | - Tamar Khatiashvili
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, 0179, Tbilisi, Georgia
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe CLIC, 1 rue Blaise Pascal, 67008, Strasbourg Cedex, France.
| | - Paola Peluso
- Istituto di Chimica Biomolecolare ICB-CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100, Sassari, Italy.
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Peluso P, Chankvetadze B. Recent developments in molecular modeling tools and applications related to pharmaceutical and biomedical research. J Pharm Biomed Anal 2024; 238:115836. [PMID: 37939549 DOI: 10.1016/j.jpba.2023.115836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 09/21/2023] [Accepted: 10/30/2023] [Indexed: 11/10/2023]
Abstract
In modern pharmaceutical and biomedical research, molecular modeling represents a useful tool to explore processes and their mechanistic bases at the molecular level. Integrating experimental and virtual analysis is a fruitful approach to study ligand-receptor interaction in chemical, biochemical and biological environments. In these fields, molecular docking and molecular dynamics are considered privileged techniques for modeling (bio)macromolecules and related complexes. This review aims to present the current landscape of molecular modeling in pharmaceutical and biomedical research by examining selected representative applications published in the last years and highlighting current topics and trends of this field. Thus, a systematic compilation of all published literature has not been attempted herein. After a brief overview of the main theoretical and computational tools used to investigate mechanisms at molecular level, recent applications of molecular modeling in drug discovery, ligand binding and for studying protein conformation and function will be discussed. Furthermore, specific sections will be devoted to the application of molecular modeling for unravelling enantioselective mechanisms underlying the enantioseparation of chiral compounds of pharmaceutical and biomedical interest as well as for studying new forms of noncovalent interactivity identified in biochemical and biological environments. The general aim of this review is to provide the reader with a modern overview of the topic, highlighting advancements and outlooks as well as drawbacks and pitfalls still affecting the applicability of theoretical and computational methods in the field of pharmaceutical and biomedical research.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB-CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy.
| | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, 0179 Tbilisi, Georgia
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5
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Dallocchio R, Dessì A, Sechi B, Peluso P. Molecular Dynamics Simulations of Amylose- and Cellulose-Based Selectors and Related Enantioseparations in Liquid Phase Chromatography. Molecules 2023; 28:7419. [PMID: 37959839 PMCID: PMC10647714 DOI: 10.3390/molecules28217419] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 10/27/2023] [Accepted: 10/30/2023] [Indexed: 11/15/2023] Open
Abstract
In the last few decades, theoretical and technical advancements in computer facilities and computational techniques have made molecular modeling a useful tool in liquid-phase enantioseparation science for exploring enantioselective recognition mechanisms underlying enantioseparations and for identifying selector-analyte noncovalent interactions that contribute to binding and recognition. Because of the dynamic nature of the chromatographic process, molecular dynamics (MD) simulations are particularly versatile in the visualization of the three-dimensional structure of analytes and selectors and in the unravelling of mechanisms at molecular levels. In this context, MD was also used to explore enantioseparation processes promoted by amylose and cellulose-based selectors, the most popular chiral selectors for liquid-phase enantioselective chromatography. This review presents a systematic analysis of the literature published in this field, with the aim of providing the reader with a comprehensive picture about the state of the art and what is still missing for modeling cellulose benzoates and the phenylcarbamates of amylose and cellulose and related enantioseparations with MD. Furthermore, advancements and outlooks, as well as drawbacks and pitfalls still affecting the applicability of MD in this field, are also discussed. The importance of integrating theoretical and experimental approaches is highlighted as an essential strategy for profiling mechanisms and noncovalent interaction patterns.
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Affiliation(s)
| | | | | | - Paola Peluso
- Unit of Enantioselective Chromatography and Molecular Recognition, Institute of Biomolecular Chemistry ICB, Secondary Branch of Sassari, CNR, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy; (R.D.); (A.D.); (B.S.)
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6
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Weiss R, Aubert E, Groslambert L, Pale P, Mamane V. Evidence for and evaluation of fluorine-tellurium chalcogen bonding. Chem Sci 2023; 14:7221-7229. [PMID: 37416727 PMCID: PMC10321537 DOI: 10.1039/d3sc00849e] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 06/03/2023] [Indexed: 07/08/2023] Open
Abstract
In the field of noncovalent interactions, chalcogen bonding (ChB) involving the tellurium atom is currently attracting much attention in supramolecular chemistry and in catalysis. However, as a prerequisite for its application, the ChB should be studied in solution to assess its formation and, if possible, to evaluate its strength. In this context, new tellurium derivatives bearing CH2F and CF3 groups were designed to exhibit Te⋯F ChB and were synthesized in good to high yields. In both types of compounds, Te⋯F interactions were characterized in solution by combining 19F, 125Te and HOESY NMR techniques. These Te⋯F ChBs were shown to contribute to the overall JTe-F coupling constants (94-170 Hz) measured in the CH2F- and CF3-based tellurium derivatives. Finally, a variable temperature NMR study allowed us to approximate the energy of the Te⋯F ChB, from 3 kJ mol-1 for the compounds with weak Te σ-holes to 11 kJ mol-1 for Te σ-holes activated by the presence of strong electron withdrawing substituents.
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Affiliation(s)
- Robin Weiss
- LASYROC, UMR 7177, University of Strasbourg 1 Rue Blaise Pascal 67000 Strasbourg France
| | | | - Loic Groslambert
- LASYROC, UMR 7177, University of Strasbourg 1 Rue Blaise Pascal 67000 Strasbourg France
| | - Patrick Pale
- LASYROC, UMR 7177, University of Strasbourg 1 Rue Blaise Pascal 67000 Strasbourg France
| | - Victor Mamane
- LASYROC, UMR 7177, University of Strasbourg 1 Rue Blaise Pascal 67000 Strasbourg France
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De Gauquier P, Peeters J, Vanommeslaeghe K, Vander Heyden Y, Mangelings D. Modelling the enantiorecognition of structurally diverse pharmaceuticals on O-substituted polysaccharide-based stationary phases. Talanta 2023; 259:124497. [PMID: 37030098 DOI: 10.1016/j.talanta.2023.124497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 03/22/2023] [Accepted: 03/27/2023] [Indexed: 03/31/2023]
Abstract
This study aims to develop models to predict the retention, separation and elution sequence of the enantiomers of structurally diverse pharmaceuticals. More specifically, Quantitative Structure Retention Relationships (QSRR) models are built that describe the relationship between molecular descriptors and retention. Eighteen structurally diverse chiral mixtures, each consisting of a pair of enantiomers, were analyzed on two polysaccharide chiral stationary phases, Chiralcel OD-RH (cellulose tris(3,5-dimethylphenylcarbamate)) and Lux amylose-2 (amylose tris(5-chloro-2-methylphenylcarbamate)), applying either a basic or an acidic mobile phase, and their retention factor and elution sequence were determined. Both achiral and, in-house defined, chiral descriptors were used as descriptive variables to build the models. Linear regression techniques, i.e. stepwise multiple linear regression (sMLR) and partial least squares (PLS) regression, were applied to model the retention or separation as a function of the descriptors. In a first step, models were built with only achiral descriptors to model the global retention of both enantiomers of a chiral molecule. Subsequently, models were built with only chiral descriptors to predict the enantioseparation and elution sequence, and finally, models were considered with both descriptor types to predict the retention, the separation and the elution sequence of the enantiomers. The global retention was predicted well by the sMLR models with only achiral descriptors. The models with only chiral descriptors were not found suitable to predict the enantioseparation and elution sequence. Finally, the models containing both chiral and achiral descriptors allowed predicting the retention well, but their ability to predict the elution sequence and separation of the enantiomers differed widely for the chromatographic systems considered.
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Peluso P, Chankvetadze B. Recognition in the Domain of Molecular Chirality: From Noncovalent Interactions to Separation of Enantiomers. Chem Rev 2022; 122:13235-13400. [PMID: 35917234 DOI: 10.1021/acs.chemrev.1c00846] [Citation(s) in RCA: 76] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
It is not a coincidence that both chirality and noncovalent interactions are ubiquitous in nature and synthetic molecular systems. Noncovalent interactivity between chiral molecules underlies enantioselective recognition as a fundamental phenomenon regulating life and human activities. Thus, noncovalent interactions represent the narrative thread of a fascinating story which goes across several disciplines of medical, chemical, physical, biological, and other natural sciences. This review has been conceived with the awareness that a modern attitude toward molecular chirality and its consequences needs to be founded on multidisciplinary approaches to disclose the molecular basis of essential enantioselective phenomena in the domain of chemical, physical, and life sciences. With the primary aim of discussing this topic in an integrated way, a comprehensive pool of rational and systematic multidisciplinary information is provided, which concerns the fundamentals of chirality, a description of noncovalent interactions, and their implications in enantioselective processes occurring in different contexts. A specific focus is devoted to enantioselection in chromatography and electromigration techniques because of their unique feature as "multistep" processes. A second motivation for writing this review is to make a clear statement about the state of the art, the tools we have at our disposal, and what is still missing to fully understand the mechanisms underlying enantioselective recognition.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, I-07100 Sassari, Italy
| | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Avenue 3, 0179 Tbilisi, Georgia
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Peluso P, Mamane V. Stereoselective Processes Based on σ-Hole Interactions. Molecules 2022; 27:molecules27144625. [PMID: 35889497 PMCID: PMC9323542 DOI: 10.3390/molecules27144625] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 07/13/2022] [Accepted: 07/15/2022] [Indexed: 02/01/2023] Open
Abstract
The σ-hole interaction represents a noncovalent interaction between atoms with σ-hole(s) on their surface (such as halogens and chalcogens) and negative sites. Over the last decade, significant developments have emerged in applications where the σ-hole interaction was demonstrated to play a key role in the control over chirality. The aim of this review is to give a comprehensive overview of the current advancements in the use of σ-hole interactions in stereoselective processes, such as formation of chiral supramolecular assemblies, separation of enantiomers, enantioselective complexation and asymmetric catalysis.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede Secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy
- Correspondence: (P.P.); (V.M.)
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 Rue Blaise Pascal, 67008 Strasbourg, France
- Correspondence: (P.P.); (V.M.)
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Unravelling functions of halogen substituents in the enantioseparation of halogenated planar chiral ferrocenes on polysaccharide-based chiral stationary phases: experimental and electrostatic potential analyses. J Chromatogr A 2022; 1673:463097. [DOI: 10.1016/j.chroma.2022.463097] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 04/27/2022] [Accepted: 04/28/2022] [Indexed: 12/31/2022]
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11
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De Gauquier P, Vanommeslaeghe K, Heyden YV, Mangelings D. Modelling approaches for chiral chromatography on polysaccharide-based and macrocyclic antibiotic chiral selectors: A review. Anal Chim Acta 2022; 1198:338861. [DOI: 10.1016/j.aca.2021.338861] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 07/12/2021] [Accepted: 07/19/2021] [Indexed: 12/25/2022]
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12
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Dessì A, Sechi B, Dallocchio R, Chankvetadze B, Pérez‐Baeza M, Cossu S, Mamane V, Pale P, Peluso P. Comparative enantioseparation of planar chiral ferrocenes on polysaccharide‐based chiral stationary phases. Chirality 2022; 34:609-619. [DOI: 10.1002/chir.23417] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 01/03/2022] [Accepted: 01/05/2022] [Indexed: 12/19/2022]
Affiliation(s)
| | - Barbara Sechi
- Istituto di Chimica Biomolecolare ICB CNR Sassari Italy
| | | | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences Tbilisi State University Tbilisi Georgia
| | - Mireia Pérez‐Baeza
- Departamento de Química Analítica Universitat de València València Spain
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN Università Ca' Foscari Venezia Venice Italy
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC Strasbourg Cedex France
| | - Patrick Pale
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC Strasbourg Cedex France
| | - Paola Peluso
- Istituto di Chimica Biomolecolare ICB CNR Sassari Italy
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Chiral Ferrocenyl–Iodotriazoles and –Iodotriazoliums as Halogen Bond Donors. Synthesis, Solid State Analysis and Catalytic Properties. Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202100927] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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14
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Dallocchio R, Sechi B, Dessì A, Chankvetadze B, Cossu S, Mamane V, Weiss R, Pale P, Peluso P. Enantioseparations of polyhalogenated 4,4'-bipyridines on polysaccharide-based chiral stationary phases and molecular dynamics simulations of selector-selectand interactions. Electrophoresis 2021; 42:1853-1863. [PMID: 33742705 DOI: 10.1002/elps.202100049] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 03/12/2021] [Accepted: 03/13/2021] [Indexed: 12/12/2022]
Abstract
2'-(4-Pyridyl)- and 2'-(4-hydroxyphenyl)-TCIBPs (TCIBP = 3,3',5,5'-tetrachloro-2-iodo-4,4'-bipyridyl) are chiral compounds that showed interesting inhibition activity against transthyretin fibrillation in vitro. We became interested in their enantioseparation since we noticed that the M-stereoisomer is more effective than the P-enantiomer. Based thereon, we recently reported the enantioseparation of 2'-substituted TCIBP derivatives with amylose-based chiral columns. Following this study, herein we describe the comparative enantioseparation of both 2'-(4-pyridyl)- and 2'-(4-hydroxyphenyl)-TCIBPs on four cellulose phenylcarbamate-based chiral columns aiming to explore the effect of the polymer backbone, as well as the nature and position of substituents on the side groups on the enantioseparability of these compounds. In the frame of this project, the impact of subtle variations of analyte and polysaccharide structures, and mobile phase (MP) polarity on retention and selectivity was evaluated. The effect of temperature on retention and selectivity was also considered, and overall thermodynamic parameters associated with the analyte adsorption onto the CSP surface were derived from van 't Hoff plots. Interesting cases of enantiomer elution order (EEO) reversal were observed. In particular, the EEO was shown to be dependent on polysaccharide backbone, the elution sequence of the two analytes being P-M and M-P on cellulose and amylose tris(3,5-dimethylphenylcarbamate), respectively. In this regard, a theoretical investigation based on molecular dynamics (MD) simulations was performed by using amylose and cellulose tris(3,5-dimethylphenylcarbamate) nonamers as virtual models of the polysaccharide-based selectors. This exploration at the molecular level shed light on the origin of the enantiodiscrimination processes.
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Affiliation(s)
- Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB CNR, Sede secondaria di Sassari, Sassari, Italy
| | - Barbara Sechi
- Istituto di Chimica Biomolecolare ICB CNR, Sede secondaria di Sassari, Sassari, Italy
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB CNR, Sede secondaria di Sassari, Sassari, Italy
| | - Bezhan Chankvetadze
- School of Exact and Natural Sciences, Institute of Physical and Analytical Chemistry, Tbilisi State University, Tbilisi, Georgia
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari Venezia, Mestre, Venezia, Italy
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR 7177, CNRS-Université de Strasbourg, Strasbourg, France
| | - Robin Weiss
- Institut de Chimie de Strasbourg, UMR 7177, CNRS-Université de Strasbourg, Strasbourg, France
| | - Patrick Pale
- Institut de Chimie de Strasbourg, UMR 7177, CNRS-Université de Strasbourg, Strasbourg, France
| | - Paola Peluso
- Istituto di Chimica Biomolecolare ICB CNR, Sede secondaria di Sassari, Sassari, Italy
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Wu Q, Huang M, Li T, Jiao L, Tu Y, Xu X, Ma X, Tian H, Qiao Y. Crystal and electronic structure of poly-halogenated lanthanide Schiff base complex: Insights into halogen bond from structural and theoretical analysis. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129054] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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16
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Peluso P, Dessì A, Dallocchio R, Sechi B, Gatti C, Chankvetadze B, Mamane V, Weiss R, Pale P, Aubert E, Cossu S. Enantioseparation of 5,5'-Dibromo-2,2'-Dichloro-3-Selanyl-4,4'-Bipyridines on Polysaccharide-Based Chiral Stationary Phases: Exploring Chalcogen Bonds in Liquid-Phase Chromatography. Molecules 2021; 26:molecules26010221. [PMID: 33406753 PMCID: PMC7794968 DOI: 10.3390/molecules26010221] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 12/26/2020] [Accepted: 12/29/2020] [Indexed: 12/25/2022] Open
Abstract
The chalcogen bond (ChB) is a noncovalent interaction based on electrophilic features of regions of electron charge density depletion (σ-holes) located on bound atoms of group VI. The σ-holes of sulfur and heavy chalcogen atoms (Se, Te) (donors) can interact through their positive electrostatic potential (V) with nucleophilic partners such as lone pairs, π-clouds, and anions (acceptors). In the last few years, promising applications of ChBs in catalysis, crystal engineering, molecular biology, and supramolecular chemistry have been reported. Recently, we explored the high-performance liquid chromatography (HPLC) enantioseparation of fluorinated 3-arylthio-4,4′-bipyridines containing sulfur atoms as ChB donors. Following this study, herein we describe the comparative enantioseparation of three 5,5′-dibromo-2,2′-dichloro-3-selanyl-4,4′-bipyridines on polysaccharide-based chiral stationary phases (CSPs) aiming to understand function and potentialities of selenium σ-holes in the enantiodiscrimination process. The impact of the chalcogen substituent on enantioseparation was explored by using sulfur and non-chalcogen derivatives as reference substances for comparison. Our investigation also focused on the function of the perfluorinated aromatic ring as a π-hole donor recognition site. Thermodynamic quantities associated with the enantioseparation were derived from van’t Hoff plots and local electron charge density of specific molecular regions of the interacting partners were inspected in terms of calculated V. On this basis, by correlating theoretical data and experimental results, the participation of ChBs and π-hole bonds in the enantiodiscrimination process was reasonably confirmed.
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Affiliation(s)
- Paola Peluso
- Institute of Biomolecular Chemistry ICB, CNR, Secondary Branch of Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy; (A.D.); (R.D.); (B.S.)
- Correspondence: (P.P.); (V.M.); Tel.: +39-079-2841218 (P.P.); +33-3-68851612 (V.M.)
| | - Alessandro Dessì
- Institute of Biomolecular Chemistry ICB, CNR, Secondary Branch of Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy; (A.D.); (R.D.); (B.S.)
| | - Roberto Dallocchio
- Institute of Biomolecular Chemistry ICB, CNR, Secondary Branch of Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy; (A.D.); (R.D.); (B.S.)
| | - Barbara Sechi
- Institute of Biomolecular Chemistry ICB, CNR, Secondary Branch of Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy; (A.D.); (R.D.); (B.S.)
| | - Carlo Gatti
- CNR-SCITEC, Istituto di Scienze e Tecnologie Chimiche “Giulio Natta”, sezione di via Golgi, via C. Golgi 19, 20133 Milano, Italy;
| | - Bezhan Chankvetadze
- Institute of Physical and Analytical Chemistry, School of Exact and Natural Sciences, Tbilisi State University, Chavchavadze Ave 3, 0179 Tbilisi, Georgia;
| | - Victor Mamane
- Strasbourg Institute of Chemistry, UMR CNRS 7177, Team LASYROC, 1 rue Blaise Pascal, University of Strasbourg, 67008 Strasbourg CEDEX, France; (R.W.); (P.P.)
- Correspondence: (P.P.); (V.M.); Tel.: +39-079-2841218 (P.P.); +33-3-68851612 (V.M.)
| | - Robin Weiss
- Strasbourg Institute of Chemistry, UMR CNRS 7177, Team LASYROC, 1 rue Blaise Pascal, University of Strasbourg, 67008 Strasbourg CEDEX, France; (R.W.); (P.P.)
| | - Patrick Pale
- Strasbourg Institute of Chemistry, UMR CNRS 7177, Team LASYROC, 1 rue Blaise Pascal, University of Strasbourg, 67008 Strasbourg CEDEX, France; (R.W.); (P.P.)
| | - Emmanuel Aubert
- Crystallography, Magnetic Resonance and Modelling (CRM2), UMR CNRS 7036, University of Lorraine, Bd des Aiguillettes, 54506 Vandoeuvre-les-Nancy, France;
| | - Sergio Cossu
- Department of Molecular Sciences and Nanosystems DSMN, Venice Ca’ Foscari University, Via Torino 155, 30172 Mestre Venezia, Italy;
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Mamane V, Peluso P, Aubert E, Weiss R, Wenger E, Cossu S, Pale P. Disubstituted Ferrocenyl Iodo- and Chalcogenoalkynes as Chiral Halogen and Chalcogen Bond Donors. Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00633] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France
| | - Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, 07100 Li Punti, Sassari, Italy
| | - Emmanuel Aubert
- , Université de Lorraine, CNRS, CRM2, Bd des Aiguillettes, F-54000 Nancy, France
| | - Robin Weiss
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France
| | - Emmanuel Wenger
- , Université de Lorraine, CNRS, CRM2, Bd des Aiguillettes, F-54000 Nancy, France
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca’ Foscari Venezia, Via Torino 155, 30172 Mestre Venezia, Italy
| | - Patrick Pale
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France
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Factors Impacting σ- and π-Hole Regions as Revealed by the Electrostatic Potential and Its Source Function Reconstruction: The Case of 4,4'-Bipyridine Derivatives. Molecules 2020; 25:molecules25194409. [PMID: 32992941 PMCID: PMC7582854 DOI: 10.3390/molecules25194409] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 09/22/2020] [Accepted: 09/23/2020] [Indexed: 02/08/2023] Open
Abstract
Positive electrostatic potential (V) values are often associated with σ- and π-holes, regions of lower electron density which can interact with electron-rich sites to form noncovalent interactions. Factors impacting σ- and π-holes may thus be monitored in terms of the shape and values of the resulting V. Further precious insights into such factors are obtained through a rigorous decomposition of the V values in atomic or atomic group contributions, a task here achieved by extending the Bader-Gatti source function (SF) for the electron density to V. In this article, this general methodology is applied to a series of 4,4'-bipyridine derivatives containing atoms from Groups VI (S, Se) and VII (Cl, Br), and the pentafluorophenyl group acting as a π-hole. As these molecules are characterized by a certain degree of conformational freedom due to the possibility of rotation around the two C-Ch bonds, from two to four conformational motifs could be identified for each structure through conformational search. On this basis, the impact of chemical and conformational features on σ- and π-hole regions could be systematically evaluated by computing the V values on electron density isosurfaces (VS) and by comparing and dissecting in atomic/atomic group contributions the VS maxima (VS,max) values calculated for different molecular patterns. The results of this study confirm that both chemical and conformational features may seriously impact σ- and π-hole regions and provide a clear analysis and a rationale of why and how this influence is realized. Hence, the proposed methodology might offer precious clues for designing changes in the σ- and π-hole regions, aimed at affecting their potential involvement in noncovalent interactions in a desired way.
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Peluso P, Sechi B, Lai G, Dessì A, Dallocchio R, Cossu S, Aubert E, Weiss R, Pale P, Mamane V, Chankvetadze B. Comparative enantioseparation of chiral 4,4’-bipyridine derivatives on coated and immobilized amylose-based chiral stationary phases. J Chromatogr A 2020; 1625:461303. [DOI: 10.1016/j.chroma.2020.461303] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 05/13/2020] [Accepted: 06/01/2020] [Indexed: 12/14/2022]
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20
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Noncovalent interactions in high-performance liquid chromatography enantioseparations on polysaccharide-based chiral selectors. J Chromatogr A 2020; 1623:461202. [DOI: 10.1016/j.chroma.2020.461202] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/02/2020] [Accepted: 05/04/2020] [Indexed: 12/13/2022]
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Rational Design, Synthesis, Characterization and Evaluation of Iodinated 4,4'-Bipyridines as New Transthyretin Fibrillogenesis Inhibitors. Molecules 2020; 25:molecules25092213. [PMID: 32397334 PMCID: PMC7248964 DOI: 10.3390/molecules25092213] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 04/29/2020] [Accepted: 05/06/2020] [Indexed: 02/06/2023] Open
Abstract
The 3,3',5,5'-tetrachloro-2-iodo-4,4'-bipyridine structure is proposed as a novel chemical scaffold for the design of new transthyretin (TTR) fibrillogenesis inhibitors. In the frame of a proof-of-principle exploration, four chiral 3,3',5,5'-tetrachloro-2-iodo-2'-substituted-4,4'- bipyridines were rationally designed and prepared from a simple trihalopyridine in three steps, including a Cu-catalysed Finkelstein reaction to introduce iodine atoms on the heteroaromatic scaffold, and a Pd-catalysed coupling reaction to install the 2'-substituent. The corresponding racemates, along with other five chiral 4,4'-bipyridines containing halogens as substituents, were enantioseparated by high-performance liquid chromatography in order to obtain pure enantiomer pairs. All stereoisomers were tested against the amyloid fibril formation (FF) of wild type (WT)-TTR and two mutant variants, V30M and Y78F, in acid mediated aggregation experiments. Among the 4,4'-bipyridine derivatives, interesting inhibition activity was obtained for both enantiomers of the 3,3',5,5'-tetrachloro-2'-(4-hydroxyphenyl)-2-iodo-4,4'-bipyridine. In silico docking studies were carried out in order to explore possible binding modes of the 4,4'-bipyridine derivatives into the TTR. The gained results point out the importance of the right combination of H-bond sites and the presence of iodine as halogen-bond donor. Both experimental and theoretical evidences pave the way for the utilization of the iodinated 4,4'-bipyridine core as template to design new promising inhibitors of TTR amyloidogenesis.
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22
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Sardella R, Ianni F, Cossignani L, Aldini G, Carotti A. Binding modes identification through molecular dynamic simulations: A case study with carnosine enantiomers and the Teicoplanin A2-2-based chiral stationary phase. J Sep Sci 2020; 43:1728-1736. [PMID: 32112671 DOI: 10.1002/jssc.202000092] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 02/25/2020] [Accepted: 02/26/2020] [Indexed: 12/12/2022]
Abstract
In the present study, an in silico methodology able to define the binding modes adopted by carnosine enantiomers in the setting of the chiral recognition process is described. The inter- and intramolecular forces involved in the enantioseparation process with the Teicoplanin A2-2 chiral selector and carnosine as model compound are successfully identified. This approach fully rationalizes, at a molecular level, the (S) < (R) enantiomeric elution order obtained under reversed-phase conditions. Consistent explanations were achieved by managing molecular dynamics results with advanced techniques of data analysis. As a result, the time-dependent identification of all the interactions simultaneously occurring in the chiral selector-enantiomeric analyte binding process was obtained. Accordingly, it was found that only (R)-carnosine is able to engage a stabilizing charge-charge interaction through its ionized imidazole ring with the carboxylate counter-part on the chiral selector. Instead, (S)-carnosine establishes intramolecular contacts between its ionized functional groups, that limit its conformational freedom and impair the association with the chiral selector unit.
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Affiliation(s)
- Roccaldo Sardella
- Department of Pharmaceutical Sciences, University of Perugia, Via Fabretti 48, Perugia, 06123, Italy
| | - Federica Ianni
- Department of Pharmaceutical Sciences, University of Perugia, Via Fabretti 48, Perugia, 06123, Italy
| | - Lina Cossignani
- Department of Pharmaceutical Sciences, University of Perugia, Via Fabretti 48, Perugia, 06123, Italy
| | - Giancarlo Aldini
- Department of Pharmaceutical Sciences, University of Milan, Via Mangiagalli 25, Milano, 20133, Italy
| | - Andrea Carotti
- Department of Pharmaceutical Sciences, University of Perugia, Via Fabretti 48, Perugia, 06123, Italy
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Peluso P, Mamane V, Dessì A, Dallocchio R, Aubert E, Gatti C, Mangelings D, Cossu S. Halogen bond in separation science: A critical analysis across experimental and theoretical results. J Chromatogr A 2019; 1616:460788. [PMID: 31866134 DOI: 10.1016/j.chroma.2019.460788] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 12/09/2019] [Accepted: 12/11/2019] [Indexed: 01/10/2023]
Abstract
The halogen bond (XB) is a noncovalent interaction involving a halogen acting as electrophile and a Lewis base. In the last decades XB has found practical application in several fields. Nevertheless, despite the pivotal role of noncovalent interactions in separation science, investigations of XB in this field are still in their infancy, and so far a limited number of studies focusing on solid phase extraction, liquid-liquid microextraction, liquid-phase chromatography, and gas chromatography separation have been published. In addition, in the last few years, our groups have been systematically studying the potentiality of XB for HPLC enantioseparations. On this basis, in the present paper up-to-date results emerging from focused experiments and theoretical analyses performed by our laboratories are integrated with a descriptive presentation of XB features and the few studies published until now in separation science. Then, the aim of this article is to provide a comprehensive and critical discussion of the topic, and account for some still open issues in the application of XB to separate chemical mixtures.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari I-07100, Italy.
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 rue Blaise Pascal, Strasbourg Cedex 67008, France.
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari I-07100, Italy
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, Li Punti, Sassari I-07100, Italy
| | - Emmanuel Aubert
- Cristallographie, Résonance Magnétique et Modélisations (CRM2), UMR CNRS 7036, Université de Lorraine, Bd des Aiguillettes, Vandoeuvre-les-Nancy 54506, France
| | - Carlo Gatti
- CNR-SCITEC, Istituto di Scienze e Tecnologie Chimiche "Giulio Natta", sezione di via Golgi, via C. Golgi 19, Milano 20133, Italy
| | - Debby Mangelings
- Department of Analytical Chemistry, Applied Chemometrics and Molecular Modelling, Vrije Universiteit Brussel - VUB, Laarbeeklaan 103, B-1090 Brussels, Belgium
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari Venezia, Via Torino 155, Mestre Venezia I-30172, Italy
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Chiral Chalcogen Bond Donors Based on the 4,4'-Bipyridine Scaffold. Molecules 2019; 24:molecules24244484. [PMID: 31817814 PMCID: PMC6943643 DOI: 10.3390/molecules24244484] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Revised: 11/29/2019] [Accepted: 12/03/2019] [Indexed: 02/06/2023] Open
Abstract
Organocatalysis through chalcogen bonding (ChB) is in its infancy, as its proof-of-principle was only reported in 2016. Herein, we report the design and synthesis of new chiral ChB donors, as well as the catalytic activity evaluation of the 5,5′-dibromo-2,2′-dichloro-3-((perfluorophenyl)selanyl)-4,4′-bipyridine as organocatalyst. The latter is based on the use of two electron-withdrawing groups, a pentafluorophenyl ring and a tetrahalo-4,4′-bipyridine skeleton, as substituents at the selenium center. Atropisomery of the tetrahalo-4,4′-bipyridine motif provides a chiral environment to these new ChB donors. Their synthesis was achieved through either selective lithium exchange and trapping or a site-selective copper-mediated reaction. Pure enantiomers of the 3-selanyl-4,4′-bipyridine were obtained by high performance liquid chromatography enantioseparation on specific chiral stationary phase, and their absolute configuration was assigned by comparison of the measured and calculated electronic circular dichroism spectra. The capability of the selenium compound to participate in σ-hole-based interactions in solution was studied by 19F NMR. Even if no asymmetric induction has been observed so far, the new selenium motif proved to be catalytically active in the reduction of 2-phenylquinoline by Hantzsch ester.
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25
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Scriba GK. Chiral recognition in separation sciences. Part I: Polysaccharide and cyclodextrin selectors. Trends Analyt Chem 2019. [DOI: 10.1016/j.trac.2019.115639] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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26
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Hofstetter RK, Hasan M, Fassauer GM, Bock C, Surur AS, Behnisch S, Grathwol CW, Potlitz F, Oergel T, Siegmund W, Link A. Simultaneous quantification of acidic and basic flupirtine metabolites by supercritical fluid chromatography according to European Medicines Agency validation. J Chromatogr A 2019; 1603:338-347. [DOI: 10.1016/j.chroma.2019.04.067] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 04/15/2019] [Accepted: 04/24/2019] [Indexed: 12/13/2022]
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Affiliation(s)
- Revannath L. Sutar
- Fakultät für Chemie und Biochemie, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum, 44801, Germany
| | - Stefan M. Huber
- Fakultät für Chemie und Biochemie, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum, 44801, Germany
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Peluso P, Dessì A, Dallocchio R, Mamane V, Cossu S. Recent studies of docking and molecular dynamics simulation for liquid-phase enantioseparations. Electrophoresis 2019; 40:1881-1896. [PMID: 30710444 DOI: 10.1002/elps.201800493] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 01/25/2019] [Accepted: 01/25/2019] [Indexed: 12/16/2022]
Abstract
Liquid-phase enantioseparations have been fruitfully applied in several fields of science. Various applications along with technical and theoretical advancements contributed to increase significantly the knowledge in this area. Nowadays, chromatographic techniques, in particular HPLC on chiral stationary phase, are considered as mature technologies. In the last thirty years, CE has been also recognized as one of the most versatile technique for analytical scale separation of enantiomers. Despite the huge number of papers published in these fields, understanding mechanistic details of the stereoselective interaction between selector and selectand is still an open issue, in particular for high-molecular weight chiral selectors like polysaccharide derivatives. With the ever growing improvement of computer facilities, hardware and software, computational techniques have become a basic tool in enantioseparation science. In this field, molecular docking and dynamics simulations proved to be extremely adaptable to model and visualize at molecular level the spatial proximity of interacting molecules in order to predict retention, selectivity, enantiomer elution order, and profile noncovalent interaction patterns underlying the recognition process. On this basis, topics and trends in using docking and molecular dynamics as theoretical complement of experimental LC and CE chiral separations are described herein. The basic concepts of these computational strategies and seminal studies performed over time are presented, with a specific focus on literature published between 2015 and November 2018. A systematic compilation of all published literature has not been attempted.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB CNR - Sede Secondaria di Sassari, Sassari, Sardegna, Italy
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB CNR - Sede Secondaria di Sassari, Sassari, Sardegna, Italy
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB CNR - Sede Secondaria di Sassari, Sassari, Sardegna, Italy
| | - Victor Mamane
- Institut de Chimie de Strasbourg, Strasbourg, Alsace, France
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari Venezia, Mestre Venezia, Veneto, Italy
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29
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Zhu B, Yao Y, Deng M, Jiang Z, Li Q. Enantioselective separation of twelve pairs of enantiomers on polysaccharide-based chiral stationary phases and thermodynamic analysis of separation mechanism. Electrophoresis 2018; 39:2398-2405. [DOI: 10.1002/elps.201800194] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Revised: 06/11/2018] [Accepted: 06/21/2018] [Indexed: 12/25/2022]
Affiliation(s)
- Bolin Zhu
- School of Pharmacy; Shenyang Pharmaceutical University; Shenyang Liaoning Province P. R. China
| | - Yaqi Yao
- School of Pharmacy; Shenyang Pharmaceutical University; Shenyang Liaoning Province P. R. China
| | - Miaoduo Deng
- School of Pharmacy; Shenyang Pharmaceutical University; Shenyang Liaoning Province P. R. China
| | - Zhen Jiang
- School of Pharmacy; Shenyang Pharmaceutical University; Shenyang Liaoning Province P. R. China
| | - Qing Li
- School of Pharmacy; Shenyang Pharmaceutical University; Shenyang Liaoning Province P. R. China
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Peluso P, Gatti C, Dessì A, Dallocchio R, Weiss R, Aubert E, Pale P, Cossu S, Mamane V. Enantioseparation of fluorinated 3-arylthio-4,4'-bipyridines: Insights into chalcogen and π-hole bonds in high-performance liquid chromatography. J Chromatogr A 2018; 1567:119-129. [PMID: 29961652 DOI: 10.1016/j.chroma.2018.06.060] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Revised: 06/12/2018] [Accepted: 06/25/2018] [Indexed: 01/20/2023]
Abstract
A chalcogen bond (ChB) is a σ-hole-based noncovalent interaction between a Lewis base and an electrophilic element of Group VI (O, S, Se, Te), which behaves as a Lewis acid. Recently, we demonstrated that halogen bond, the more familiar σ-hole-based interaction, is able to promote the enantioseparation of chiral compounds in HPLC environment. On this basis, an investigation to detect ChBs, functioning as stereoselective secondary interactions for HPLC enantioseparations, was started off and the results of this study are described herein. Our investigation also focused on the impact of the perfluorinated aromatic ring as a π-hole donor recognition site. For these purposes, seven atropisomeric fluorinated 3-arylthio-4,4'-bipyridines were designed, synthesized and used as potential ChB donors (ChBDs) with two cellulose-based chiral stationary phases (CSPs) containing carbonyl groups as ChB acceptors (ChBAs). In addition, one and two analogues lacking fluorine and sulphur, respectively, were prepared as terms of comparison. The design of the test analytes was computationally guided. In this regard, electrostatic potentials (EPs) associated with σ- and π-holes were computed and the atomic contributions to the sulphur EP maxima were derived using a molecular space partitioning in terms of Bader's atomic basins. This procedure is akin to the Bader-Gatti electron density source function (SF) decomposition, yet suitably extended to the EP field. For five 3-substituted-4,4'-bipyridines, thermodynamic parameters were derived from van't Hoff plots. Finally, the use of molecular dynamic (MD) simulation to model ChB in cellulose-analyte complexes was explored. Evidences that σ-hole and π-hole interactions can jointly drive HPLC enantioseparations through recognition sites generated by electronic charge depletion emerged from both experimental results and theoretical data.
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Affiliation(s)
- Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, 07100 Li Punti, Sassari, Italy.
| | - Carlo Gatti
- CNR-ISTM, Istituto di Scienze e Tecnologie Molecolari, via C. Golgi 19, 20133 Milano, Italy; Istituto Lombardo Accademia di Scienze e Lettere, via Brera 28, 20121 Milano, Italy
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, 07100 Li Punti, Sassari, Italy
| | - Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, 07100 Li Punti, Sassari, Italy
| | - Robin Weiss
- Institut de Chimie de Strasbourg, UMR CNR 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France
| | - Emmanuel Aubert
- Cristallographie, Résonance Magnétique et Modélisations (CRM2), UMR CNRS 7036, Université de Lorraine, Bd des Aiguillettes, 54506 Vandoeuvre-les-Nancy, France
| | - Patrick Pale
- Institut de Chimie de Strasbourg, UMR CNR 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari di Venezia, Via Torino 155, 30172 Mestre Venezia, Italy
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNR 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France.
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Dallocchio R, Dessì A, Solinas M, Arras A, Cossu S, Aubert E, Mamane V, Peluso P. Halogen bond in high-performance liquid chromatography enantioseparations: Description, features and modelling. J Chromatogr A 2018; 1563:71-81. [PMID: 29871805 DOI: 10.1016/j.chroma.2018.05.061] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 05/24/2018] [Accepted: 05/27/2018] [Indexed: 02/08/2023]
Abstract
Halogen bond (XB)-driven enantioseparations involve halogen-centred regions of electronic charge depletion (σ-hole) as electrophilic recognition sites. The knowledge in this field is still in its infancy. Indeed, although the influence of halogens on enantioseparation have been often considered, only recently the function of electrophilic halogens (Cl, Br, I) as enantioseparations 'drivers' has been demonstrated by our groups. Further to these studies, in this paper we focus on some unexplored issues. First, as XB-driven chiral recognition mechanisms are at an early stage of comprehension, a theoretical investigation based on a series of 32 molecular dynamic (MD) simulations was performed by using polyhalogenated 4,4'-bipyridines and polysaccharide-based polymers as ligands and receptors, respectively. Enantiomer elution orders (EEOs) were derived from calculations and the theoretical model accounted for some analyte- and chiral stationary phase (CSP)-dependent experimental EEO inversions. Then, the function of halogen-centred σ-holes in competitive systems, presenting also hydrogen bond (HB) centres as recognition sites, was considered. In this regard, Pirkle's enantioseparations of halogenated compounds performed on Whelk-O1 were theoretically re-examined and electrostatic potentials (EPs) associated with both σ-holes on halogens and HB centres were computed and compared. Then, the enantioseparation of halogenated 2-nitro-1-arylethanols was performed on cellulose tris(3,5-dimethylphenylcarbamate) (CDMPC) and the influence of halogen substituents on the chromatographic results was evaluated by correlating theoretical and experimental data.
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Affiliation(s)
- Roberto Dallocchio
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, I-07100 Li Punti, Sassari, Italy
| | - Alessandro Dessì
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, I-07100 Li Punti, Sassari, Italy
| | - Maurizio Solinas
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, I-07100 Li Punti, Sassari, Italy
| | - Antonio Arras
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, I-07100 Li Punti, Sassari, Italy
| | - Sergio Cossu
- Dipartimento di Scienze Molecolari e Nanosistemi DSMN, Università Ca' Foscari di Venezia, Via Torino 155, I-30172 Mestre Venezia, Italy
| | - Emmanuel Aubert
- Cristallographie, Résonance Magnétique et Modélisations (CRM2), UMR CNRS 7036, Université de Lorraine, Bd des Aiguillettes, 54506 Vandoeuvre-les-Nancy, France
| | - Victor Mamane
- Institut de Chimie de Strasbourg, UMR CNRS 7177, Equipe LASYROC, 1 rue Blaise Pascal, 67008 Strasbourg Cedex, France.
| | - Paola Peluso
- Istituto di Chimica Biomolecolare ICB, CNR, Sede secondaria di Sassari, Traversa La Crucca 3, Regione Baldinca, I-07100 Li Punti, Sassari, Italy.
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