Abundance and ecological associations of small mammals

Estimating direct and indirect effects of habitat structure on nesting field sparrows (Spizella pusilla) using structural equation models

Due to consistent population declines across the continent, grassland birds have become a guild of high conservation and management interest. Despite a large number of studies investigating grassland bird habitat associations, we know relatively little about the mechanisms through which habitat characteristics may impact grassland birds, as these mechanisms are often assumed rather than directly tested. For this study, we estimated whether the effects of habitat structure on breeding Field Sparrows are mediated through changes in predator (snake and raccoon) abundance, alternative prey availability, or arthropod biomass using structural equation models. We found no evidence of nest survival or nest density of Field Sparrows being directly influenced by nest predator abundance, alternative prey, or arthropod biomass, although habitat characteristics associated with increased nest survival were also associated with greater arthropod biomass and reduced predator abundance. We suggest that habitat structure in our study area primarily impacts breeding Field Sparrows through direct means, such as influencing nest concealment or foraging efficiency. Our results also suggest that nest success and nest density are decoupled in our study area, so Field Sparrows may be preferentially selecting nest sites with structural characteristics that do not increase nest survival. Ultimately, our findings from this study indicate that while predator avoidance and food provisioning likely play an important role in determining nest survival for grassland birds, predator abundance and arthropod biomass may not necessarily predict predation risk and foraging efficiency to the extent that is often assumed.

Emigration effects on estimates of age- and sex-specific survival of two sciurids

Age- and sex-specific survival estimates are crucial to understanding important life history characteristics, and variation in these estimates can be a key driver of population dynamics. When estimating survival using Cormack-Jolly-Seber (CJS) models, emigration is typically unknown but confounded with apparent survival. Consequently, especially for populations or age classes with high dispersal rates, apparent survival estimates are often biased low and temporal patterns in survival might be masked when site fidelity varies temporally. We used 9 years of annual mark-recapture data to estimate age-, sex-, and time-specific apparent survival of Humboldt's flying squirrels (Glaucomys oregonensis) and Townsend's chipmunks (Neotamias townsendii). For Humboldt's flying squirrels, these estimates support a small body of research investigating potential variation in survival among age and sex classes, but age- and sex-specific survival has not been evaluated for Townsend's chipmunks. We also quantified the effects of age- and sex-specific emigration on confounded estimates of apparent survival. Our estimates of juvenile flying squirrel survival were high relative to other small mammal species and estimates for both species were variable among years. We found survival differed moderately among age and sex classes for Humboldt's flying squirrels, but little among age and sex classes for Townsend's chipmunks, and that the degree to which emigration confounded apparent survival estimates varied substantially among years. Our results demonstrate that emigration can influence commonly used estimates of apparent survival. Unadjusted estimates confounded the interpretation of differences in survival between age and sex classes and masked potential temporal patterns in survival because the magnitude of adjustment varied among years. We conclude that apparent survival estimators are robust during some time periods; however, when emigration rates vary in time, the effects of emigration should be carefully considered and accounted for.

Habitat associations of small mammal communities in a restored prairie system in southern Illinois

Extensive habitat loss and degradation have transformed the grasslands of North America into one of the continent’s most vulnerable ecosystems and have greatly imperiled the plants and animals that depend on them. Small mammal communities play a pivotal role in maintaining the health and function of grasslands, and managing small mammal populations is an important, though overlooked, part of grassland restoration and management. We identified habitat variables in restored tallgrass prairie patches that were most strongly associated with variation in small mammal abundance and community composition, with the goal of aiding management efforts to manipulate small mammal populations. We found that small mammal abundance at the local vegetation scale was negatively related both to litter depth and plant diversity. At the landscape scale, small mammal abundance was positively associated with the amount of water surrounding a patch, and negatively associated with the amount of grassland surrounding a patch. Variation in small mammal community composition largely was governed by differences in habitat structure at the landscape scale, rather than differences in vegetation structure at the local scale. We suggested that managers interested in influencing small mammal abundance in grasslands employ tools such as prescribed fire to decrease litter depth if increased small mammal abundance is desired, or increase plant diversity by sowing a high diversity of seeds to depress small mammal abundance.

Spatiotemporal dynamics in vital rates of Humboldt’s flying squirrels and Townsend’s chipmunks in a late-successional forest

Knowledge of the spatiotemporal variability of abundance and vital rates is essential to the conservation of wildlife populations. In Pacific Northwest forests, previous small mammal research has focused on estimating abundance; few studies have focused on vital rates. We used robust design temporal symmetry models and live-trapping data collected 2011–2016 at nine sites to estimate apparent annual survival, population growth rate, and recruitment of Humboldt’s flying squirrels (Glaucomys oregonensis) and Townsend’s chipmunks (Neotamias townsendii) in a late-successional forest of the Cascade Mountains of Oregon, United States. We also estimated the proportional contribution of apparent annual survival and recruitment to population growth rate. Covariates previously associated with abundance were also associated with vital rates for Townsend’s chipmunks, but less so for Humboldt’s flying squirrels. Apparent annual survival was nearly constant (range = 0.47 to 0.51) among years and sites for Humboldt’s flying squirrels but was consistently lower and more variable among years for Townsend’s chipmunks (range = 0.13 to 0.31). Recruitment was variable among years for both species. Apparent annual survival generally contributed more than recruitment to the population growth rate of Humboldt’s flying squirrels. For Townsend’s chipmunks, recruitment consistently contributed more than apparent annual survival to population growth rate. These findings suggest that life history strategies differed for these co-occurring species. This study demonstrates substantial temporal variation in vital rates and some differences in abundance and vital rate habitat associations, suggesting that habitat suitability inferences based on short time series or variation in abundance could be misleading.

Effects of trapping effort and trap placement on estimating abundance of Humboldt's flying squirrels

Live trapping is a common tool used to assess demography of small mammals. However, live-trapping is often expensive and stressful to captured individuals. Thus, assessing the relative tradeoffs among study goals, project expenses, and animal well-being is necessary. Here, we evaluated how apparent bias and precision of estimates for apparent annual survival, abundance, capture probability, and recapture probability of Humboldt’s flying squirrels (Glaucomys oregonensis) varied with the number of secondary trapping occasions. We used data from forested sites trapped on 12 consecutive occasions annually in the HJ Andrews Experimental Forest (9 sites, 6 years) and the Siuslaw National Forest (seven sites, three years) in Oregon. We used Huggins robust design models to estimate parameters of interest for the first 4, 8, and 12 trapping occasions. We also estimated the effect of attaching Tomahawk traps to tree boles on site- and year-specific flying squirrel capture frequencies. Our estimates with 12 occasions were similar to those from previous studies. Abundances and capture probabilities were variable among years on both sites; however, variation was much lower on the Siuslaw sites. Reducing the length of primary trapping occasions from 12 to 8 nights had very little impact on parameter estimates, but further reducing the length of primary trapping occasions to four nights caused substantial apparent bias in parameter estimates and decreased precision. We found that attaching Tomahawk traps to tree boles increased the site- and year-specific capture frequency of flying squirrels. Our results suggest that live-trapping studies targeting Humboldt’s flying squirrels in the Pacific Northwest of the United States could reduce per-site costs and stress to captured individuals without biasing estimates by reducing the length of primary trapping occasions to 8 nights. We encourage similar analyses for other commonly-trapped species in these and other ecosystems.