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Applegate MB, Karrobi K, Angelo Jr. JP, Austin W, Tabassum SM, Aguénounon E, Tilbury K, Saager RB, Gioux S, Roblyer D. OpenSFDI: an open-source guide for constructing a spatial frequency domain imaging system. JOURNAL OF BIOMEDICAL OPTICS 2020; 25:1-13. [PMID: 31925946 PMCID: PMC7008504 DOI: 10.1117/1.jbo.25.1.016002] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 12/12/2019] [Indexed: 05/09/2023]
Abstract
Significance: Spatial frequency domain imaging (SFDI) is a diffuse optical measurement technique that can quantify tissue optical absorption (μa) and reduced scattering (<inline-formula>μs'</inline-formula>) on a pixel-by-pixel basis. Measurements of μa at different wavelengths enable the extraction of molar concentrations of tissue chromophores over a wide field, providing a noncontact and label-free means to assess tissue viability, oxygenation, microarchitecture, and molecular content. We present here openSFDI: an open-source guide for building a low-cost, small-footprint, three-wavelength SFDI system capable of quantifying μa and <inline-formula>μs'</inline-formula> as well as oxyhemoglobin and deoxyhemoglobin concentrations in biological tissue. The companion website provides a complete parts list along with detailed instructions for assembling the openSFDI system.<p> Aim: We describe the design of openSFDI and report on the accuracy and precision of optical property extractions for three different systems fabricated according to the instructions on the openSFDI website.</p> <p> Approach: Accuracy was assessed by measuring nine tissue-simulating optical phantoms with a physiologically relevant range of μa and <inline-formula>μs'</inline-formula> with the openSFDI systems and a commercial SFDI device. Precision was assessed by repeatedly measuring the same phantom over 1 h.</p> <p> Results: The openSFDI systems had an error of 0 ± 6 % in μa and -2 ± 3 % in <inline-formula>μs'</inline-formula>, compared to a commercial SFDI system. Bland-Altman analysis revealed the limits of agreement between the two systems to be ± 0.004 mm - 1 for μa and -0.06 to 0.1 mm - 1 for <inline-formula>μs'</inline-formula>. The openSFDI system had low drift with an average standard deviation of 0.0007 mm - 1 and 0.05 mm - 1 in μa and <inline-formula>μs'</inline-formula>, respectively.</p>,<p> Conclusion: The openSFDI provides a customizable hardware platform for research groups seeking to utilize SFDI for quantitative diffuse optical imaging.</p>
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Affiliation(s)
- Matthew B. Applegate
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Kavon Karrobi
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | | | - Wyatt Austin
- University of Maine, Department of Chemical and Biomedical Engineering, Orono, Maine, United States
| | - Syeda M. Tabassum
- Boston University, Department of Electrical and Computer Engineering, Boston, Massachusetts, United States
| | | | - Karissa Tilbury
- University of Maine, Department of Chemical and Biomedical Engineering, Orono, Maine, United States
| | - Rolf B. Saager
- Linköping University, Department of Biomedical Engineering, Linköping Sweden
| | - Sylvain Gioux
- University of Strasbourg, ICube Laboratory, Strasbourg, France
| | - Darren Roblyer
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
- Address all correspondence to Darren Roblyer, E-mail:
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Gioux S, Mazhar A, Cuccia DJ. Spatial frequency domain imaging in 2019: principles, applications, and perspectives. JOURNAL OF BIOMEDICAL OPTICS 2019; 24:1-18. [PMID: 31222987 PMCID: PMC6995958 DOI: 10.1117/1.jbo.24.7.071613] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 05/09/2019] [Indexed: 05/20/2023]
Abstract
Spatial frequency domain imaging (SFDI) has witnessed very rapid growth over the last decade, owing to its unique capabilities for imaging optical properties and chromophores over a large field-of-view and in a rapid manner. We provide a comprehensive review of the principles of this imaging method as of 2019, review the modeling of light propagation in this domain, describe acquisition methods, provide an understanding of the various implementations and their practical limitations, and finally review applications that have been published in the literature. Importantly, we also introduce a group effort by several key actors in the field for the dissemination of SFDI, including publications, advice in hardware and implementations, and processing code, all freely available online.
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Affiliation(s)
- Sylvain Gioux
- University of Strasbourg, ICube Laboratory, Strasbourg, France
- Address all correspondence to Sylvain Gioux, E-mail:
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Gioux S, Mazhar A, Cuccia DJ. Spatial frequency domain imaging in 2019: principles, applications, and perspectives. JOURNAL OF BIOMEDICAL OPTICS 2019. [PMID: 31222987 DOI: 10.1117/1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Spatial frequency domain imaging (SFDI) has witnessed very rapid growth over the last decade, owing to its unique capabilities for imaging optical properties and chromophores over a large field-of-view and in a rapid manner. We provide a comprehensive review of the principles of this imaging method as of 2019, review the modeling of light propagation in this domain, describe acquisition methods, provide an understanding of the various implementations and their practical limitations, and finally review applications that have been published in the literature. Importantly, we also introduce a group effort by several key actors in the field for the dissemination of SFDI, including publications, advice in hardware and implementations, and processing code, all freely available online.
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Affiliation(s)
- Sylvain Gioux
- University of Strasbourg, ICube Laboratory, Strasbourg, France
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Burns JM, Jia W, Nelson JS, Majaron B, Anvari B. Photothermal treatment of port-wine stains using erythrocyte-derived particles doped with indocyanine green: a theoretical study. JOURNAL OF BIOMEDICAL OPTICS 2018; 23:1-10. [PMID: 30499264 PMCID: PMC6318811 DOI: 10.1117/1.jbo.23.12.121616] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 11/02/2018] [Indexed: 05/20/2023]
Abstract
Pulsed dye laser irradiation in the wavelength range of 585 to 600 nm is currently the gold standard for treatment of port-wine stains (PWSs). However, this treatment method is often ineffective for deeply seated blood vessels and in individuals with moderate to heavy pigmentation. Use of optical particles doped with the FDA-approved near-infrared (NIR) absorber, indocyanine green (ICG), can potentially provide an effective method to overcome these limitations. Herein, we theoretically investigate the effectiveness of particles derived from erythrocytes, which contain ICG, in mediating photothermal destruction of PWS blood vessels. We refer to these particles as NIR erythrocyte-derived transducers (NETs). Our theoretical model consists of a Monte Carlo algorithm to estimate the volumetric energy deposition, a finite elements approach to solve the heat diffusion equation, and a damage integral based on an Arrhenius relationship to quantify tissue damage. The model geometries include simulated PWS blood vessels as well as actual human PWS blood vessels plexus obtained by the optical coherence tomography. Our simulation results indicate that blood vessels containing micron- or nano-sized NETs and irradiated at 755 nm have higher levels of photothermal damage as compared to blood vessels without NETs irradiated at 585 nm. Blood vessels containing micron-sized NETs also showed higher photothermal damage than blood vessels containing nano-sized NETs. The theoretical model presented can be used in guiding the fabrication of NETs with patient-specific optical properties to allow for personalized treatment based on the depth and size of blood vessels as well as the pigmentation of the individual's skin.
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Affiliation(s)
- Joshua M. Burns
- University of California, Riverside, Department of Bioengineering, Riverside, California, United States
| | - Wangcun Jia
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
| | - J. Stuart Nelson
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
| | - Boris Majaron
- Jožef Stefan Institute, Department of Complex Matter, Ljubljana, Slovenia
- University of Ljubljana, Faculty of Mathematics and Physics, Ljubljana, Slovenia
| | - Bahman Anvari
- University of California, Riverside, Department of Bioengineering, Riverside, California, United States
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
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Saager RB, Baldado ML, Rowland RA, Kelly KM, Durkin AJ. Method using in vivo quantitative spectroscopy to guide design and optimization of low-cost, compact clinical imaging devices: emulation and evaluation of multispectral imaging systems. JOURNAL OF BIOMEDICAL OPTICS 2018; 23:1-12. [PMID: 29633609 PMCID: PMC5890028 DOI: 10.1117/1.jbo.23.4.046002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Accepted: 03/16/2018] [Indexed: 05/30/2023]
Abstract
With recent proliferation in compact and/or low-cost clinical multispectral imaging approaches and commercially available components, questions remain whether they adequately capture the requisite spectral content of their applications. We present a method to emulate the spectral range and resolution of a variety of multispectral imagers, based on in-vivo data acquired from spatial frequency domain spectroscopy (SFDS). This approach simulates spectral responses over 400 to 1100 nm. Comparing emulated data with full SFDS spectra of in-vivo tissue affords the opportunity to evaluate whether the sparse spectral content of these imagers can (1) account for all sources of optical contrast present (completeness) and (2) robustly separate and quantify sources of optical contrast (crosstalk). We validate the approach over a range of tissue-simulating phantoms, comparing the SFDS-based emulated spectra against measurements from an independently characterized multispectral imager. Emulated results match the imager across all phantoms (<3 % absorption, <1 % reduced scattering). In-vivo test cases (burn wounds and photoaging) illustrate how SFDS can be used to evaluate different multispectral imagers. This approach provides an in-vivo measurement method to evaluate the performance of multispectral imagers specific to their targeted clinical applications and can assist in the design and optimization of new spectral imaging devices.
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Affiliation(s)
- Rolf B. Saager
- University of California, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
| | - Melissa L. Baldado
- University of California, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
| | - Rebecca A. Rowland
- University of California, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
| | - Kristen M. Kelly
- University of California, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
- University of California, Department of Dermatology, Irvine, California, United States
| | - Anthony J. Durkin
- University of California, Beckman Laser Institute and Medical Clinic, Irvine, California, United States
- University of California, Department of Biomedical Engineering, Irvine, California, United States
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Torabzadeh M, Park IY, Bartels RA, Durkin AJ, Tromberg BJ. Compressed single pixel imaging in the spatial frequency domain. JOURNAL OF BIOMEDICAL OPTICS 2017; 22:30501. [PMID: 28300272 PMCID: PMC5352911 DOI: 10.1117/1.jbo.22.3.030501] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Accepted: 02/27/2017] [Indexed: 05/03/2023]
Abstract
We have developed compressed sensing single pixel spatial frequency domain imaging (cs-SFDI) to characterize tissue optical properties over a wide field of view ( 35 ?? mm × 35 ?? mm ) using multiple near-infrared (NIR) wavelengths simultaneously. Our approach takes advantage of the relatively sparse spatial content required for mapping tissue optical properties at length scales comparable to the transport scattering length in tissue ( l tr ? 1 ?? mm ) and the high bandwidth available for spectral encoding using a single-element detector. cs-SFDI recovered absorption ( ? a ) and reduced scattering ( ? s ? ) coefficients of a tissue phantom at three NIR wavelengths (660, 850, and 940 nm) within 7.6% and 4.3% of absolute values determined using camera-based SFDI, respectively. These results suggest that cs-SFDI can be developed as a multi- and hyperspectral imaging modality for quantitative, dynamic imaging of tissue optical and physiological properties.
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Affiliation(s)
- Mohammad Torabzadeh
- Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, United States
- University of California, Department of Biomedical Engineering, Irvine, California, United States
| | - Il-Yong Park
- Dankook University, Department of Biomedical Engineering, College of Medicine, Republic of Korea
| | - Randy A. Bartels
- Colorado State University, School of Biomedical Engineering, Fort Collins, Colorado, United States
| | - Anthony J. Durkin
- Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, United States
| | - Bruce J. Tromberg
- Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, United States
- University of California, Department of Biomedical Engineering, Irvine, California, United States
- Address all correspondence to: Bruce J. Tromberg, E-mail:
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Saager RB, Sharif A, Kelly KM, Durkin AJ. In vivo isolation of the effects of melanin from underlying hemodynamics across skin types using spatial frequency domain spectroscopy. JOURNAL OF BIOMEDICAL OPTICS 2016; 21:57001. [PMID: 27143641 PMCID: PMC4890358 DOI: 10.1117/1.jbo.21.5.057001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Accepted: 04/13/2016] [Indexed: 05/03/2023]
Abstract
Skin is a highly structured tissue, raising concerns as to whether skin pigmentation due to epidermal melanin may confound accurate measurements of underlying hemodynamics. Using both venous and arterial cuff occlusions as a means of inducing differential hemodynamic perturbations, we present analyses of spectra limited to the visible or near-infrared regime, in addition to a layered model approach. The influence of melanin, spanning Fitzpatrick skin types I to V, on underlying estimations of hemodynamics in skin as interpreted by these spectral regions are assessed. The layered model provides minimal cross-talk between melanin and hemodynamics and enables removal of problematic correlations between measured tissue oxygenation estimates and skin phototype.
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Affiliation(s)
- Rolf B. Saager
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, 1002 Health Sciences Road East, Irvine, California 92612, United States
- Address all correspondence to: Rolf B. Saager, E-mail:
| | - Ata Sharif
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, 1002 Health Sciences Road East, Irvine, California 92612, United States
| | - Kristen M. Kelly
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, 1002 Health Sciences Road East, Irvine, California 92612, United States
- University of California, Irvine, Department of Dermatology, 118 Medical Surge 1, Irvine, California 92697, United States
| | - Anthony J. Durkin
- University of California, Irvine, Beckman Laser Institute and Medical Clinic, 1002 Health Sciences Road East, Irvine, California 92612, United States
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Saager RB, Balu M, Crosignani V, Sharif A, Durkin AJ, Kelly KM, Tromberg BJ. In vivo measurements of cutaneous melanin across spatial scales: using multiphoton microscopy and spatial frequency domain spectroscopy. JOURNAL OF BIOMEDICAL OPTICS 2015; 20:066005. [PMID: 26065839 PMCID: PMC4463032 DOI: 10.1117/1.jbo.20.6.066005] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2014] [Accepted: 05/18/2015] [Indexed: 05/19/2023]
Abstract
The combined use of nonlinear optical microscopy and broadband reflectance techniques to assess melanin concentration and distribution thickness in vivo over the full range of Fitzpatrick skin types is presented. Twelve patients were measured using multiphoton microscopy (MPM) and spatial frequency domain spectroscopy (SFDS) on both dorsal forearm and volar arm, which are generally sun-exposed and non-sun-exposed areas, respectively. Both MPM and SFDS measured melanin volume fractions between (skin type I non-sun-exposed) and 20% (skin type VI sun exposed). MPM measured epidermal (anatomical) thickness values ~30-65 μm, while SFDS measured melanin distribution thickness based on diffuse optical path length. There was a strong correlation between melanin concentration and melanin distribution (epidermal) thickness measurements obtained using the two techniques. While SFDS does not have the ability to match the spatial resolution of MPM, this study demonstrates that melanin content as quantified using SFDS is linearly correlated with epidermal melanin as measured using MPM (R² = 0.8895). SFDS melanin distribution thickness is correlated to MPM values (R² = 0.8131). These techniques can be used individually and/or in combination to advance our understanding and guide therapies for pigmentation-related conditions as well as light-based treatments across a full range of skin types.
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Affiliation(s)
- Rolf B. Saager
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
- Address all correspondence to: Rolf B. Saager, E-mail:
| | - Mihaela Balu
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
| | - Viera Crosignani
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
| | - Ata Sharif
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
| | - Anthony J. Durkin
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
| | - Kristen M. Kelly
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
- University of California, Department of Dermatology, Irvine, California, 92697, United States
| | - Bruce J. Tromberg
- University of California, Beckman Laser Institute, Laser Microbeam and Medical Program, Irvine, California, 92612, United States
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Yuan G, Alqasemi U, Chen A, Yang Y, Zhu Q. Light-emitting diode-based multiwavelength diffuse optical tomography system guided by ultrasound. JOURNAL OF BIOMEDICAL OPTICS 2014; 19:126003. [PMID: 25473884 PMCID: PMC4255433 DOI: 10.1117/1.jbo.19.12.126003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2014] [Accepted: 10/29/2014] [Indexed: 06/04/2023]
Abstract
Laser diodes are widely used in diffuse optical tomography (DOT) systems but are typically expensive and fragile, while light-emitting diodes (LEDs) are cheaper and are also available in the near-infrared (NIR) range with adequate output power for imaging deeply seated targets. In this study, we introduce a new low-cost DOT system using LEDs of four wavelengths in the NIR spectrum as light sources. The LEDs were modulated at 20 kHz to avoid ambient light. The LEDs were distributed on a hand-held probe and a printed circuit board was mounted at the back of the probe to separately provide switching and driving current to each LED. Ten optical fibers were used to couple the reflected light to 10 parallel photomultiplier tube detectors. A commercial ultrasound system provided simultaneous images of target location and size to guide the image reconstruction. A frequency-domain (FD) laser-diode-based system with ultrasound guidance was also used to compare the results obtained from those of the LED-based system. Results of absorbers embedded in intralipid and inhomogeneous tissue phantoms have demonstrated that the LED-based system provides a comparable quantification accuracy of targets to the FD system and has the potential to image deep targets such as breast lesions.
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Affiliation(s)
- Guangqian Yuan
- University of Connecticut, Biomedical Engineering Department, 260 Glenbrook Road; U-3247, Storrs, Connecticut 06269-3247, United States
| | - Umar Alqasemi
- University of Connecticut, Biomedical Engineering Department, 260 Glenbrook Road; U-3247, Storrs, Connecticut 06269-3247, United States
| | - Aaron Chen
- University of Pennsylvania, College of Art and Sciences, 249 South 36th Street, Philadelphia 19104-6304, United States
| | - Yi Yang
- University of Connecticut, Departments of Electrical and Computer Engineering, 371 Fairfield Way; U-4157, Storrs, Connecticut 06269-4157, United States
| | - Quing Zhu
- University of Connecticut, Biomedical Engineering Department, 260 Glenbrook Road; U-3247, Storrs, Connecticut 06269-3247, United States
- University of Pennsylvania, College of Art and Sciences, 249 South 36th Street, Philadelphia 19104-6304, United States
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