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Solano I, Parisse P, Cavalleri O, Gramazio F, Casalis L, Canepa M. Investigating organic multilayers by spectroscopic ellipsometry: specific and non-specific interactions of polyhistidine with NTA self-assembled monolayers. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2016; 7:544-53. [PMID: 27335745 PMCID: PMC4901546 DOI: 10.3762/bjnano.7.48] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Accepted: 03/31/2016] [Indexed: 12/12/2022]
Abstract
BACKGROUND A versatile strategy for protein-surface coupling in biochips exploits the affinity for polyhistidine of the nitrilotriacetic acid (NTA) group loaded with Ni(II). Methods based on optical reflectivity measurements such as spectroscopic ellipsometry (SE) allow for label-free, non-invasive monitoring of molecule adsorption/desorption at surfaces. RESULTS This paper describes a SE study about the interaction of hexahistidine (His6) on gold substrates functionalized with a thiolate self-assembled monolayer bearing the NTA end group. By systematically applying the difference spectra method, which emphasizes the small changes of the ellipsometry spectral response upon the nanoscale thickening/thinning of the molecular film, we characterized different steps of the process such as the NTA-functionalization of Au, the adsorption of the His6 layer and its eventual displacement after reaction with competitive ligands. The films were investigated in liquid, and ex situ in ambient air. The SE investigation has been complemented by AFM measurements based on nanolithography methods (nanografting mode). CONCLUSION Our approach to the SE data, exploiting the full spectroscopic potential of the method and basic optical models, was able to provide a picture of the variation of the film thickness along the process. The combination of δΔ i +1 ,i (λ), δΨ i +1 ,i (λ) (layer-addition mode) and δΔ(†) i ', i +1(λ), δΨ(†) i ', i +1(λ) (layer-removal mode) difference spectra allowed us to clearly disentangle the adsorption of His6 on the Ni-free NTA layer, due to non specific interactions, from the formation of a neatly thicker His6 film induced by the Ni(II)-loading of the NTA SAM.
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Affiliation(s)
- Ilaria Solano
- Dipartimento di Fisica, Università di Genova, Via Dodecaneso 33, Genova, Italy
| | - Pietro Parisse
- Elettra Sincrotrone Trieste S.C.p.A., s.s. 14 km 163,5 in Area Science Park, Basovizza, Trieste, Italy
| | - Ornella Cavalleri
- Dipartimento di Fisica, Università di Genova, Via Dodecaneso 33, Genova, Italy
| | - Federico Gramazio
- Dipartimento di Fisica, Università di Genova, Via Dodecaneso 33, Genova, Italy
| | - Loredana Casalis
- Elettra Sincrotrone Trieste S.C.p.A., s.s. 14 km 163,5 in Area Science Park, Basovizza, Trieste, Italy
| | - Maurizio Canepa
- Dipartimento di Fisica, Università di Genova, Via Dodecaneso 33, Genova, Italy
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Shoda SI, Uyama H, Kadokawa JI, Kimura S, Kobayashi S. Enzymes as Green Catalysts for Precision Macromolecular Synthesis. Chem Rev 2016; 116:2307-413. [PMID: 26791937 DOI: 10.1021/acs.chemrev.5b00472] [Citation(s) in RCA: 318] [Impact Index Per Article: 39.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The present article comprehensively reviews the macromolecular synthesis using enzymes as catalysts. Among the six main classes of enzymes, the three classes, oxidoreductases, transferases, and hydrolases, have been employed as catalysts for the in vitro macromolecular synthesis and modification reactions. Appropriate design of reaction including monomer and enzyme catalyst produces macromolecules with precisely controlled structure, similarly as in vivo enzymatic reactions. The reaction controls the product structure with respect to substrate selectivity, chemo-selectivity, regio-selectivity, stereoselectivity, and choro-selectivity. Oxidoreductases catalyze various oxidation polymerizations of aromatic compounds as well as vinyl polymerizations. Transferases are effective catalysts for producing polysaccharide having a variety of structure and polyesters. Hydrolases catalyzing the bond-cleaving of macromolecules in vivo, catalyze the reverse reaction for bond forming in vitro to give various polysaccharides and functionalized polyesters. The enzymatic polymerizations allowed the first in vitro synthesis of natural polysaccharides having complicated structures like cellulose, amylose, xylan, chitin, hyaluronan, and chondroitin. These polymerizations are "green" with several respects; nontoxicity of enzyme, high catalyst efficiency, selective reactions under mild conditions using green solvents and renewable starting materials, and producing minimal byproducts. Thus, the enzymatic polymerization is desirable for the environment and contributes to "green polymer chemistry" for maintaining sustainable society.
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Affiliation(s)
- Shin-ichiro Shoda
- Department of Biomolecular Engineering, Graduate School of Engineering, Tohoku University , Aoba-ku, Sendai 980-8579, Japan
| | - Hiroshi Uyama
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University , Yamadaoka, Suita 565-0871, Japan
| | - Jun-ichi Kadokawa
- Department of Chemistry, Biotechnology, and Chemical Engineering, Graduate School of Science and Engineering, Kagoshima University , Korimoto, Kagoshima 890-0065, Japan
| | - Shunsaku Kimura
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University , Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Shiro Kobayashi
- Center for Fiber & Textile Science, Kyoto Institute of Technology , Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan
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Kurzątkowska K, Mielecki M, Grzelak K, Verwilst P, Dehaen W, Radecki J, Radecka H. Immobilization of His-tagged kinase JAK2 onto the surface of a plasmon resonance gold disc modified with different copper (II) complexes. Talanta 2014; 130:336-41. [DOI: 10.1016/j.talanta.2014.07.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Revised: 07/01/2014] [Accepted: 07/03/2014] [Indexed: 12/01/2022]
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Cabanas-Danés J, Rodrigues ED, Landman E, van Weerd J, van Blitterswijk C, Verrips T, Huskens J, Karperien M, Jonkheijm P. A Supramolecular Host–Guest Carrier System for Growth Factors Employing VHH Fragments. J Am Chem Soc 2014; 136:12675-81. [DOI: 10.1021/ja505695w] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Jordi Cabanas-Danés
- Molecular
Nanofabrication Group, MESA+ Institute for Nanotechnology,
Faculty of Science and Technology, University of Twente, P.O. Box 217, 7500 AE Enschede, Netherlands
| | | | | | - Jasper van Weerd
- Molecular
Nanofabrication Group, MESA+ Institute for Nanotechnology,
Faculty of Science and Technology, University of Twente, P.O. Box 217, 7500 AE Enschede, Netherlands
| | - Clemens van Blitterswijk
- Department
of Complex Tissue and Organ Regeneration, MERLN Institute, Maastricht University, Netherlands
| | - Theo Verrips
- Cellular
Architecture and Dynamics, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, Netherlands
| | - Jurriaan Huskens
- Molecular
Nanofabrication Group, MESA+ Institute for Nanotechnology,
Faculty of Science and Technology, University of Twente, P.O. Box 217, 7500 AE Enschede, Netherlands
| | | | - Pascal Jonkheijm
- Molecular
Nanofabrication Group, MESA+ Institute for Nanotechnology,
Faculty of Science and Technology, University of Twente, P.O. Box 217, 7500 AE Enschede, Netherlands
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García PF, Freiherr von Roman M, Reinlein S, Wolf M, Berensmeier S. Impact of nanoparticle aggregation on protein recovery through a pentadentate chelate ligand on magnetic carriers. ACS APPLIED MATERIALS & INTERFACES 2014; 6:13607-16. [PMID: 25090244 DOI: 10.1021/am503082s] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The growing need for more efficient separation techniques still dominates downstream processing of biomolecules, thus encouraging the continuous development of advanced nanomaterials. In this paper we present an improved process for recovering recombinant histidine tagged green fluorescent protein from an E. coli cell lysate. Superparamagnetic core-shell nanocarriers are functionalized with a pentadentate chelate affinity ligand and then loaded with metal ions (Cu(2+), Ni(2+), or Zn(2+)). The separation process yields high binding capacity (250 mg/g), good selectivity, purity >98%, good recyclability with 90% capacity after 9 cycles, and long-term stability. We determined the main physical properties of the magnetite-based nanoparticles such as saturation magnetization (59 A m(2)/kg), primary particle diameter (22 ± 4 nm), and specific surface area (89 m(2)/g). Our results show that this material is a promising tool for bioseparation applications. One special focus of the work includes analyzing the changes in the hydrodynamic size distribution using dynamic light scattering and transmission electron microscopy. We relate these effects to different interaction levels in the system and discuss how the stronger aggregation of the magnetite core is the main limiting factor for the separation yield, leading to a considerable decrease in the number of metal ions available for biomolecular capture. Otherwise weaker interactions lead instead to agglomeration effects that have no impact on the binding capacity of the system. The simple relation between the size of the aggregated units and the size of the primary particles corresponds approximately to the relation between the number of existing binding sites and the actual protein binding in the separation process. Compared with that, the effect of steric hindrance among proteins is of less significance.
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Affiliation(s)
- P Fraga García
- Bioseparation Engineering Group, Mechanical Engineering Faculty, Technische Universität München , Boltzmannstrasse 15, D-85748 Garching, Germany
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Nakamura I, Makino A, Ohmae M, Kimura S. Enzymatic Polymerization to Cellulose by Crosslinked Enzyme Immobilized on Gold Solid Surface. CHEM LETT 2012. [DOI: 10.1246/cl.2012.37] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Itsuko Nakamura
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University
| | - Akira Makino
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University
| | - Masashi Ohmae
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University
| | - Shunsaku Kimura
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University
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Reversible immobilization of rhamnulose-1-phosphate aldolase for biocatalysis: Enzyme loading optimization and aldol addition kinetic modeling. Biochem Eng J 2011. [DOI: 10.1016/j.bej.2011.06.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Nakamura I, Horikawa Y, Makino A, Sugiyama J, Kimura S. Enzymatic Polymerization Catalyzed by Immobilized Endoglucanase on Gold. Biomacromolecules 2011; 12:785-90. [DOI: 10.1021/bm101394j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Itsuko Nakamura
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Yoshiki Horikawa
- Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Gokasho, Uji, 611-0011, Japan
| | - Akira Makino
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Junji Sugiyama
- Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Gokasho, Uji, 611-0011, Japan
| | - Shunsaku Kimura
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
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