1
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Qi X, Wang Y, Yu H, Liu R, Leppert A, Zheng Z, Zhong X, Jin Z, Wang H, Li X, Wang X, Landreh M, A Morozova-Roche L, Johansson J, Xiong S, Iashchishyn I, Chen G. Spider Silk Protein Forms Amyloid-Like Nanofibrils through a Non-Nucleation-Dependent Polymerization Mechanism. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2023; 19:e2304031. [PMID: 37455347 DOI: 10.1002/smll.202304031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Revised: 06/29/2023] [Indexed: 07/18/2023]
Abstract
Amyloid fibrils-nanoscale fibrillar aggregates with high levels of order-are pathogenic in some today incurable human diseases; however, there are also many physiologically functioning amyloids in nature. The process of amyloid formation is typically nucleation-elongation-dependent, as exemplified by the pathogenic amyloid-β peptide (Aβ) that is associated with Alzheimer's disease. Spider silk, one of the toughest biomaterials, shares characteristics with amyloid. In this study, it is shown that forming amyloid-like nanofibrils is an inherent property preserved by various spider silk proteins (spidroins). Both spidroins and Aβ capped by spidroin N- and C-terminal domains, can assemble into macroscopic spider silk-like fibers that consist of straight nanofibrils parallel to the fiber axis as observed in native spider silk. While Aβ forms amyloid nanofibrils through a nucleation-dependent pathway and exhibits strong cytotoxicity and seeding effects, spidroins spontaneously and rapidly form amyloid-like nanofibrils via a non-nucleation-dependent polymerization pathway that involves lateral packing of fibrils. Spidroin nanofibrils share amyloid-like properties but lack strong cytotoxicity and the ability to self-seed or cross-seed human amyloidogenic peptides. These results suggest that spidroins´ unique primary structures have evolved to allow functional properties of amyloid, and at the same time direct their fibrillization pathways to avoid formation of cytotoxic intermediates.
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Affiliation(s)
- Xingmei Qi
- The Jiangsu Key Laboratory of Infection and Immunity, Institutes of Biology and Medical Sciences, Soochow University, Suzhou, 215123, China
| | - Yu Wang
- Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, 14157, Sweden
- College of Wildlife and Protected Area, Northeast Forestry University, Harbin, 150040, China
| | - Hairui Yu
- The Jiangsu Key Laboratory of Infection and Immunity, Institutes of Biology and Medical Sciences, Soochow University, Suzhou, 215123, China
| | - Ruifang Liu
- The Jiangsu Key Laboratory of Infection and Immunity, Institutes of Biology and Medical Sciences, Soochow University, Suzhou, 215123, China
| | - Axel Leppert
- Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, 17165, Sweden
| | - Zihan Zheng
- Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, 14157, Sweden
- Department of Pharmacology, Xi'an Jiaotong University, Shaanxi, 710061, China
| | - Xueying Zhong
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Biomedical Engineering and Health Systems, KTH Royal Institute of Technology, Huddinge, 14152, Sweden
| | - Zhen Jin
- Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, 14157, Sweden
- Department of Pharmacology, Xi'an Jiaotong University, Shaanxi, 710061, China
| | - Han Wang
- The Jiangsu Key Laboratory of Infection and Immunity, Institutes of Biology and Medical Sciences, Soochow University, Suzhou, 215123, China
| | - Xiaoli Li
- Department of Pharmacology, College of Pharmacy, Chongqing Medical University, Chongqing, 400016, China
| | - Xiuzhe Wang
- Department of Neurology, Shanghai Sixth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200233, China
| | - Michael Landreh
- Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Solna, 17165, Sweden
| | | | - Jan Johansson
- Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, 14157, Sweden
| | - Sidong Xiong
- The Jiangsu Key Laboratory of Infection and Immunity, Institutes of Biology and Medical Sciences, Soochow University, Suzhou, 215123, China
| | - Igor Iashchishyn
- Department of Medical Biochemistry and Biophysics, Umeå University, Umeå, 90187, Sweden
| | - Gefei Chen
- Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, 14157, Sweden
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2
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Yoshinaga N, Tateishi A, Kobayashi Y, Kubo T, Miyakawa H, Satoh K, Numata K. Effect of Oligomers Derived from Biodegradable Polyesters on Eco- and Neurotoxicity. Biomacromolecules 2023; 24:2721-2729. [PMID: 37085155 PMCID: PMC10265658 DOI: 10.1021/acs.biomac.3c00160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 04/08/2023] [Indexed: 04/23/2023]
Abstract
Biodegradable polymers are eco-friendly materials and have attracted attention for use in a sustainable society because they are not accumulated in the environment. Although the characteristics of biodegradable polymers have been assessed well, the effects of their degradation products have not. Herein, we comprehensively evaluated the chemical toxicities of biodegradable polyester, polycaprolactone (PCL), and synthetic oligocaprolactones (OCLs) with different degrees of polymerization. While the PCL did not show any adverse effects on various organisms, high levels of shorter OCLs and the monomer (1 μg/mL for freshwater microorganisms and 1 mg/mL for marine algae and mammalian cells) damaged the tested organisms, including freshwater microorganisms, marine algae, and mammalian cells, which indicated the toxicities of the degradation products under unnaturally high concentrations. These results highlight the need for a further understanding of the effects of the degradation products resulting from biodegradable polyesters to ensure a genuinely sustainable society.
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Affiliation(s)
- Naoto Yoshinaga
- Biomacromolecule
Research Team, RIKEN Center for Sustainable
Resource Science, Wako-shi, Saitama 351-0198, Japan
- Institute
for Advanced Biosciences, Keio University, Tsuruoka-shi, Yamagata 997-0017, Japan
| | - Ayaka Tateishi
- Biomacromolecule
Research Team, RIKEN Center for Sustainable
Resource Science, Wako-shi, Saitama 351-0198, Japan
| | - Yasuaki Kobayashi
- School
of Materials and Chemical Technology, Tokyo
Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan
| | - Tomohiro Kubo
- School
of Materials and Chemical Technology, Tokyo
Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan
| | - Hitoshi Miyakawa
- Center
for Bioscience Research and Education, Utsunomiya
University, Utsunomiya, Tochigi 321-8505, Japan
| | - Kotaro Satoh
- School
of Materials and Chemical Technology, Tokyo
Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan
| | - Keiji Numata
- Biomacromolecule
Research Team, RIKEN Center for Sustainable
Resource Science, Wako-shi, Saitama 351-0198, Japan
- Institute
for Advanced Biosciences, Keio University, Tsuruoka-shi, Yamagata 997-0017, Japan
- Department
of Material Chemistry, Kyoto University, Kyoto-shi, Kyoto 615-8510, Japan
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3
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Hofmaier M, Malanin M, Bittrich E, Lentz S, Urban B, Scheibel T, Fery A, Müller M. β-Sheet Structure Formation within Binary Blends of Two Spider Silk Related Peptides. Biomacromolecules 2023; 24:825-840. [PMID: 36632028 DOI: 10.1021/acs.biomac.2c01266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Intrinsically disordered proteins (IDPs) play an important role in molecular biology and medicine because their induced folding can lead to so-called conformational diseases, where β-amyloids play an important role. Still, the molecular folding process into the different substructures, such as parallel/antiparallel or extended β-sheet/crossed β-sheet is not fully understood. The recombinant spider silk protein eADF4(Cx) consisting of repeating modules C, which are composed of a crystalline (pep-c) and an amorphous peptide sequence (pep-a), can be used as a model system for IDP since it can assemble into similar structures. In this work, blend films of the pep-c and pep-a sequences were investigated to modulate the β-sheet formation by varying the molar fraction of pep-c and pep-a. Dichroic Fourier-transform infrared spectroscopy (FTIR), circular dichroism, spectroscopic ellipsometry, atomic force microscopy, and IR nanospectroscopy were used to examine the secondary structure, the formation of parallel and antiparallel β-sheets, their orientation, and the microscopic roughness and phase formation within peptide blend films upon methanol post-treatment. New insights into the formation of filament-like structures in these silk blend films were obtained. Filament-like structures could be locally assigned to β-sheet-rich structures. Further, the antiparallel or parallel character and the orientation of the formed β-sheets could be clearly determined. Finally, the ideal ratio of pep-a and pep-c sequences found in the fibroin 4 of the major ampullate silk of spiders could also be rationalized by comparing the blend and spider silk protein systems.
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Affiliation(s)
- Mirjam Hofmaier
- Institute of Physical Chemistry and Polymer Physics, Leibniz Institute of Polymer Research Dresden (IPF), Hohe Strasse 6, D-01069Dresden, Germany.,Chair of Physical Chemistry of Polymeric Materials, Technical University Dresden (TUD), D-01069Dresden, Germany
| | - Mikhail Malanin
- Leibniz Institute of Polymer Research Dresden (IPF), Institute of Macromolecular Chemistry, Hohe Strasse 6, D-01069Dresden, Germany
| | - Eva Bittrich
- Leibniz Institute of Polymer Research Dresden (IPF), Institute of Macromolecular Chemistry, Hohe Strasse 6, D-01069Dresden, Germany
| | - Sarah Lentz
- Chair of Biomaterials, University of Bayreuth, Prof.-Rüdiger-Bormann-Str. 1, D-95447Bayreuth, Germany
| | - Birgit Urban
- Institute of Physical Chemistry and Polymer Physics, Leibniz Institute of Polymer Research Dresden (IPF), Hohe Strasse 6, D-01069Dresden, Germany
| | - Thomas Scheibel
- Chair of Biomaterials, University of Bayreuth, Prof.-Rüdiger-Bormann-Str. 1, D-95447Bayreuth, Germany.,Bayreuther Zentrum für Kolloide und Grenzflächen (BZKG), Universität Bayreuth, Universitätsstraße 30, D-95440Bayreuth, Germany.,Bayreuther Zentrum für Molekulare Biowissenschaften (BZMB), Universität Bayreuth, Universitätsstraße 30, D-95440Bayreuth, Germany.,Bayreuther Materialzentrum (BayMAT), Universität Bayreuth, Universitätsstraße 30, D-95440Bayreuth, Germany.,Bayerisches Polymerinstitut (BPI), Universität Bayreuth, Universitätsstraße 30, D-95440Bayreuth, Germany
| | - Andreas Fery
- Institute of Physical Chemistry and Polymer Physics, Leibniz Institute of Polymer Research Dresden (IPF), Hohe Strasse 6, D-01069Dresden, Germany.,Chair of Physical Chemistry of Polymeric Materials, Technical University Dresden (TUD), D-01069Dresden, Germany
| | - Martin Müller
- Institute of Physical Chemistry and Polymer Physics, Leibniz Institute of Polymer Research Dresden (IPF), Hohe Strasse 6, D-01069Dresden, Germany.,Chair of Macromolecular Chemistry, Technical University of Dresden (TUD), Mommsenstraße 4, D-01062Dresden, Germany
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4
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Chan NJ, Lentz S, Gurr PA, Scheibel T, Qiao GG. Mimicry of silk utilizing synthetic polypeptides. Prog Polym Sci 2022. [DOI: 10.1016/j.progpolymsci.2022.101557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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5
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Madden PW, Klyubin I, Ahearne MJ. Silk fibroin safety in the eye: a review that highlights a concern. BMJ Open Ophthalmol 2020; 5:e000510. [PMID: 33024827 PMCID: PMC7513638 DOI: 10.1136/bmjophth-2020-000510] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 07/15/2020] [Accepted: 08/07/2020] [Indexed: 12/25/2022] Open
Abstract
The biomedical use of silk as a suture dates back to antiquity. Fibroin is the structural element that determines the strength of silk and here we consider the safety of fibroin in its role in ophthalmology. The high mechanical strength of silk meant sufficiently thin threads could be made for eye microsurgery, but such usage was all but superseded by synthetic polymer sutures, primarily because silk in its entirety was more inflammatory. Significant immunological response can normally be avoided by careful manufacturing to provide high purity fibroin, and it has been utilised in this form for tissue engineering an array of fibre and film substrata deployed in research with cells of the eye. Films of fibroin can also be made transparent, which is a required property in the visual pathway. Transparent layers of corneal epithelial, stromal and endothelial cells have all been demonstrated with maintenance of phenotype, as have constructs supporting retinal cells. Fibroin has a lack of demonstrable infectious agent transfer, an ability to be sterilised and prepared with minimal contamination, long-term predictable degradation and low direct cytotoxicity. However, there remains a known ability to be involved in amyloid formation and potential amyloidosis which, without further examination, is enough to currently question whether fibroin should be employed in the eye given its innervation into the brain.
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Affiliation(s)
- Peter W Madden
- Trinity Centre for Biomedical Engineering, Trinity Biomedical Sciences Institute, Trinity College Dublin, the University of Dublin, Dublin, Ireland
- Department of Mechanical, Manufacturing and Biomedical Engineering, School of Engineering, Trinity College Dublin, the University of Dublin, Dublin, Ireland
| | - Igor Klyubin
- Department of Pharmacology Therapeutics, School of Medicine, Trinity College Dublin, the University of Dublin, Dublin, Ireland
- Institute of Neuroscience, Trinity College Dublin, the University of Dublin, Dublin, Ireland
| | - Mark J Ahearne
- Trinity Centre for Biomedical Engineering, Trinity Biomedical Sciences Institute, Trinity College Dublin, the University of Dublin, Dublin, Ireland
- Department of Mechanical, Manufacturing and Biomedical Engineering, School of Engineering, Trinity College Dublin, the University of Dublin, Dublin, Ireland
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6
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Liu X, Toprakcioglu Z, Dear AJ, Levin A, Ruggeri FS, Taylor CG, Hu M, Kumita JR, Andreasen M, Dobson CM, Shimanovich U, Knowles TPJ. Fabrication and Characterization of Reconstituted Silk Microgels for the Storage and Release of Small Molecules. Macromol Rapid Commun 2019; 40:e1800898. [DOI: 10.1002/marc.201800898] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 02/18/2019] [Indexed: 12/28/2022]
Affiliation(s)
- Xizhou Liu
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Zenon Toprakcioglu
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Alexander J. Dear
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Aviad Levin
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Francesco Simone Ruggeri
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Christopher G. Taylor
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Mengsha Hu
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Janet R. Kumita
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Maria Andreasen
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
- Dr. M. AndreasenAarhus University Wilhelm Meyer's Allé 3 8000 Aarhus Denmark
| | - Christopher M. Dobson
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | | | - Tuomas P. J. Knowles
- X. Liu, Z. Toprakcioglu, A. J. Dear, Dr. A. Levin, Dr. F. S. Ruggeri, C. G. Taylor, M. Hu, Dr. J. R. Kumita, Dr. M. Andreasen, Prof. C. M. Dobson, Prof. T. P. J. KnowlesDepartment of ChemistryUniversity of Cambridge Lensfield Road Cambridge CB2 1EW UK
- Prof. T. P. J. KnowlesDepartment of Physics J J Thomson Avenue Cambridge CB3 0HE UK
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7
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Nanostructured, Self-Assembled Spider Silk Materials for Biomedical Applications. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2019; 1174:187-221. [PMID: 31713200 DOI: 10.1007/978-981-13-9791-2_6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The extraordinary mechanical properties of spider silk fibers result from the interplay of composition, structure and self-assembly of spider silk proteins (spidroins). Genetic approaches enabled the biotechnological production of recombinant spidroins which have been employed to unravel the self-assembly and spinning process. Various processing conditions allowed to explore non-natural morphologies including nanofibrils, particles, capsules, hydrogels, films or foams. Recombinant spider silk proteins and materials made thereof can be utilized for biomedical applications, such as drug delivery, tissue engineering or 3D-biomanufacturing.
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8
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Ragona L, Gasymov O, Guliyeva AJ, Aslanov RB, Zanzoni S, Botta C, Molinari H. Rhodamine binds to silk fibroin and inhibits its self-aggregation. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2018; 1866:661-667. [DOI: 10.1016/j.bbapap.2018.03.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 03/16/2018] [Accepted: 03/22/2018] [Indexed: 01/19/2023]
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9
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Humenik M, Lang G, Scheibel T. Silk nanofibril self-assembly versus electrospinning. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2018; 10:e1509. [PMID: 29393590 DOI: 10.1002/wnan.1509] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Revised: 10/18/2017] [Accepted: 12/19/2017] [Indexed: 01/16/2023]
Abstract
Natural silk fibers represent one of the most advanced blueprints for (bio)polymer scientists, displaying highly optimized mechanical properties due to their hierarchical structures. Biotechnological production of silk proteins and implementation of advanced processing methods enabled harnessing the potential of these biopolymer not just based on the mechanical properties. In addition to fibers, diverse morphologies can be produced, such as nonwoven meshes, films, hydrogels, foams, capsules and particles. Among them, nanoscale fibrils and fibers are particularly interesting concerning medical and technical applications due to their biocompatibility, environmental and mechanical robustness as well as high surface-to-volume ratio. Therefore, we introduce here self-assembly of silk proteins into hierarchically organized structures such as supramolecular nanofibrils and fabricated materials based thereon. As an alternative to self-assembly, we also present electrospinning a technique to produce nanofibers and nanofibrous mats. Accordingly, we introduce a broad range of silk-based dopes, used in self-assembly and electrospinning: natural silk proteins originating from natural spinning glands, natural silk protein solutions reconstituted from fibers, engineered recombinant silk proteins designed from natural blueprints, genetic fusions of recombinant silk proteins with other structural or functional peptides and moieties, as well as hybrids of recombinant silk proteins chemically conjugated with nonproteinaceous biotic or abiotic molecules. We highlight the advantages but also point out drawbacks of each particular production route. The scope includes studies of the natural self-assembly mechanism during natural silk spinning, production of silk fibrils as new nanostructured non-native scaffolds allowing dynamic morphological switches, as well as studying potential applications. This article is categorized under: Biology-Inspired Nanomaterials > Peptide-Based Structures Nanotechnology Approaches to Biology > Nanoscale Systems in Biology Biology-Inspired Nanomaterials > Protein and Virus-Based Structures.
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Affiliation(s)
- Martin Humenik
- Biomaterials, Faculty of Engineering Science, University of Bayreuth, Bayreuth, Germany
| | - Gregor Lang
- Biomaterials, Faculty of Engineering Science, University of Bayreuth, Bayreuth, Germany
| | - Thomas Scheibel
- Biomaterials, Faculty of Engineering Science, University of Bayreuth, Bayreuth, Germany.,Bayreuth Center for Colloids and Interfaces (BZKG), Research Center Bio-Macromolecules (BIOmac), Bayreuth Center for Molecular Biosciences (BZMB), Bayreuth Center for Material Science (BayMAT), Bavarian Polymer Institute (BPI), Universität Bayreuth, Bayreuth, Germany
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10
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Tsuchiya K, Numata K. Chemoenzymatic Synthesis of Polypeptides for Use as Functional and Structural Materials. Macromol Biosci 2017; 17. [PMID: 28722358 DOI: 10.1002/mabi.201700177] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 06/20/2017] [Indexed: 12/13/2022]
Abstract
Polypeptides inspired by the natural functional and structural proteins present in living systems are promising materials for various fields in terms of their versatile functionality and physical properties. Designing and synthesizing mimetic sequences of specific peptide motifs in proteins are important for exploring the functionality of natural proteins. Chemoenzymatic polymerization, which utilizes aminolysis (i.e., the reverse reaction of hydrolysis catalyzed by proteases), is a useful technique for synthesizing artificial polypeptide materials and has several advantages, including facile synthesis protocols, environmental friendliness, scalability, and atom economy. In this review, recent progress in chemoenzymatic polypeptide synthesis for the production of functional and structural materials for various applications is summarized in conjunction with the current status of technical challenges in the field.
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Affiliation(s)
- Kousuke Tsuchiya
- Enzyme Research Team, Biomass Engineering Research Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Keiji Numata
- Enzyme Research Team, Biomass Engineering Research Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
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11
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Tsuchiya K, Masunaga H, Numata K. Tensile Reinforcement of Silk Films by the Addition of Telechelic-Type Polyalanine. Biomacromolecules 2017; 18:1002-1009. [DOI: 10.1021/acs.biomac.6b01891] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kousuke Tsuchiya
- Enzyme
Research Team, Biomass Engineering Research Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Hiroyasu Masunaga
- Japan Synchrotron
Radiation Research Institute, 1-1-1,
Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - Keiji Numata
- Enzyme
Research Team, Biomass Engineering Research Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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12
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Wong YM, Masunaga H, Chuah JA, Sudesh K, Numata K. Enzyme-Mimic Peptide Assembly To Achieve Amidolytic Activity. Biomacromolecules 2016; 17:3375-3385. [PMID: 27642764 DOI: 10.1021/acs.biomac.6b01169] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Amyloid fibers are classified as a new generation of tunable bionanomaterials that exhibit new functions related to their distinctive characteristics, such as their universality, tunability, and stiffness. Here, we introduce the catalytic residues of serine protease into a peptide catalyst (PC) via an enzyme-mimic approach. The rational design of a repeating pattern of polar and nonpolar amino acids favors the conversion of the peptides into amyloid-like fibrils via self-assembly. Distinct fibrous morphologies have been observed at different pH values and temperatures, which indicates that different fibril packing schemes can be designed; hence, fibrillar peptides can be used to generate efficient artificial catalysts for amidolytic activities at mild pH values. The results of atomic force microscopy, Raman spectroscopy, and wide-angle X-ray scattering analyses are used to discuss and compare the fibril structure of a fibrillar PC with its amidolytic activity. The pH of the fibrillation reaction crucially affects the pKa of the side chains of the catalytic triads and is important for stable fibril formation. Temperature is another important parameter that controls the self-assembly of peptides into highly stacked and laminated morphologies. The morphology and stability of fibrils are crucial and represent important factors for demonstrating the capability of the peptides to exert amidolytic activity. The observed amidolytic activity of PC4, one of the PCs, was validated using an inhibition assay, which revealed that PC4 can perform enzyme-like amidolytic catalysis. These results provide insights into the potential use of designed peptides in the generation of efficient artificial enzymes.
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Affiliation(s)
- Yoke-Ming Wong
- Enzyme Research Team, RIKEN Center for Sustainable Resource Science , 2-1, Hirosawa, Wako-shi, Saitama 351-0198, Japan.,Ecobiomaterial Research Laboratory, School of Biological Sciences, Universiti Sains Malaysia , 11800, Minden, Penang, Malaysia
| | - Hiroyasu Masunaga
- Japan Synchrotron Radiation Research Institute, 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - Jo-Ann Chuah
- Enzyme Research Team, RIKEN Center for Sustainable Resource Science , 2-1, Hirosawa, Wako-shi, Saitama 351-0198, Japan
| | - Kumar Sudesh
- Ecobiomaterial Research Laboratory, School of Biological Sciences, Universiti Sains Malaysia , 11800, Minden, Penang, Malaysia
| | - Keiji Numata
- Enzyme Research Team, RIKEN Center for Sustainable Resource Science , 2-1, Hirosawa, Wako-shi, Saitama 351-0198, Japan
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Numata K. Poly(amino acid)s/polypeptides as potential functional and structural materials. Polym J 2015. [DOI: 10.1038/pj.2015.35] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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14
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Humenik M, Scheibel T. Self-assembly of nucleic acids, silk and hybrid materials thereof. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2014; 26:503102. [PMID: 25419786 DOI: 10.1088/0953-8984/26/50/503102] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Top-down approaches based on etching techniques have almost reached their limits in terms of dimension. Therefore, novel assembly strategies and types of nanomaterials are required to allow technological advances. Self-assembly processes independent of external energy sources and unlimited in dimensional scaling have become a very promising approach. Here,we highlight recent developments in self-assembled DNA-polymer, silk-polymer and silk-DNA hybrids as promising materials with biotic and abiotic moieties for constructing complex hierarchical materials in ‘bottom-up’ approaches. DNA block copolymers assemble into nanostructures typically exposing a DNA corona which allows functionalization, labeling and higher levels of organization due to its specific addressable recognition properties. In contrast, self-assembly of natural silk proteins as well as their recombinant variants yields mechanically stable β-sheet rich nanostructures. The combination of silk with abiotic polymers gains hybrid materials with new functionalities. Together, the precision of DNA hybridization and robustness of silk fibrillar structures combine in novel conjugates enable processing of higher-order structures with nanoscale architecture and programmable functions.
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15
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Yucel T, Lovett ML, Kaplan DL. Silk-based biomaterials for sustained drug delivery. J Control Release 2014; 190:381-97. [PMID: 24910193 PMCID: PMC4142080 DOI: 10.1016/j.jconrel.2014.05.059] [Citation(s) in RCA: 212] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Revised: 05/24/2014] [Accepted: 05/28/2014] [Indexed: 10/25/2022]
Abstract
Silk presents a rare combination of desirable properties for sustained drug delivery, including aqueous-based purification and processing options without chemical cross-linkers, compatibility with common sterilization methods, controllable and surface-mediated biodegradation into non-inflammatory by-products, biocompatibility, utility in drug stabilization, and robust mechanical properties. A versatile silk-based toolkit is currently available for sustained drug delivery formulations of small molecule through macromolecular drugs, with a promise to mitigate several drawbacks associated with other degradable sustained delivery technologies in the market. Silk-based formulations utilize silk's well-defined nano- through microscale structural hierarchy, stimuli-responsive self-assembly pathways and crystal polymorphism, as well as sequence and genetic modification options towards targeted pharmaceutical outcomes. Furthermore, by manipulating the interactions between silk and drug molecules, near-zero order sustained release may be achieved through diffusion- and degradation-based release mechanisms. Because of these desirable properties, there has been increasing industrial interest in silk-based drug delivery systems currently at various stages of the developmental pipeline from pre-clinical to FDA-approved products. Here, we discuss the unique aspects of silk technology as a sustained drug delivery platform and highlight the current state of the art in silk-based drug delivery. We also offer a potential early development pathway for silk-based sustained delivery products.
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Affiliation(s)
- Tuna Yucel
- Tufts University, Department of Biomedical Engineering, Medford, MA 02155, USA; Ekteino Laboratories, New York, NY 10022, USA
| | - Michael L Lovett
- Tufts University, Department of Biomedical Engineering, Medford, MA 02155, USA; Ekteino Laboratories, New York, NY 10022, USA
| | - David L Kaplan
- Tufts University, Department of Biomedical Engineering, Medford, MA 02155, USA
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16
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Bortolini C, Liu L, Gronewold TMA, Wang C, Besenbacher F, Dong M. The position of hydrophobic residues tunes peptide self-assembly. SOFT MATTER 2014; 10:5656-5661. [PMID: 24995505 DOI: 10.1039/c4sm01065e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The final structure and properties of synthetic peptides mainly depend on their sequence composition and experimental conditions. This work demonstrates that a variation in the positions of hydrophobic residues within a peptide sequence can tune the self-assembly. Techniques employed are atomic force microscopy, transmission electron microscopy and an innovative method based on surface acoustic waves. In addition, a systematic investigation on pH dependence was carried out by utilizing constant experimental parameters.
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Affiliation(s)
- Christian Bortolini
- Interdisciplinary Nanoscience Center (iNANO), Gustav Wieds 14, Building 1590, Aarhus C., Denmark.
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17
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Humenik M, Magdeburg M, Scheibel T. Influence of repeat numbers on self-assembly rates of repetitive recombinant spider silk proteins. J Struct Biol 2014; 186:431-7. [DOI: 10.1016/j.jsb.2014.03.010] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2014] [Revised: 03/11/2014] [Accepted: 03/12/2014] [Indexed: 12/11/2022]
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18
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Fagerland J, Finne-Wistrand A, Numata K. Short one-pot chemo-enzymatic synthesis of L-lysine and L-alanine diblock co-oligopeptides. Biomacromolecules 2014; 15:735-43. [PMID: 24484289 DOI: 10.1021/bm4015254] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Amphiphilic diblock co-oligopeptides are interesting and functional macromolecular materials for biomedical applications because of their self-assembling properties. Here, we developed a synthesis method for diblock co-oligopeptides by using chemo-enzymatic polymerization, which was a relatively short (30 min) and efficient reaction (over 40% yield). Block and random oligo(L-lysine-co-L-alanine) [oligo(Lys-co-Ala)] were synthesized using activated papain as enzymatic catalyst. The reaction time was optimized according to kinetic studies of oligo(L-alanine) and oligo(L-lysine). Using (1)H NMR spectroscopy and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry, we confirmed that diblock and random co-oligopeptides were synthesized. Optical microscopy further revealed differences in the crystalline morphology between random and block co-oligopeptides. Plate-like, hexagonal, and hollow crystals were formed due to the strong impact of the monomer distribution and pH of the solution. The different crystalline structures open up interesting possibilities to form materials for both tissue engineering and controlled drug/gene delivery systems.
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Affiliation(s)
- Jenny Fagerland
- Department of Fibre and Polymer Technology, School of Chemical Science and Engineering, KTH Royal Institute of Technology , SE-100 44, Stockholm, Sweden
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19
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Ageitos JM, Baker PJ, Sugahara M, Numata K. Proteinase K-Catalyzed Synthesis of Linear and Star Oligo(l-phenylalanine) Conjugates. Biomacromolecules 2013; 14:3635-42. [DOI: 10.1021/bm4009974] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Jose M. Ageitos
- Enzyme
Research Team, Biomass
Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
| | - Peter J. Baker
- Enzyme
Research Team, Biomass
Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
| | - Michihiro Sugahara
- Enzyme
Research Team, Biomass
Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
| | - Keiji Numata
- Enzyme
Research Team, Biomass
Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
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20
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Dams-Kozlowska H, Majer A, Tomasiewicz P, Lozinska J, Kaplan DL, Mackiewicz A. Purification and cytotoxicity of tag-free bioengineered spider silk proteins. J Biomed Mater Res A 2012; 101:456-64. [PMID: 22865581 DOI: 10.1002/jbm.a.34353] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2012] [Revised: 05/29/2012] [Accepted: 06/19/2012] [Indexed: 11/06/2022]
Abstract
Bioengineered spider silk-like proteins can serve as biomaterials for various biomedical applications. These proteins can be assembled in several morphological forms such as films, microcapsules, spheres, fibers, gels, and scaffolds. However, crucial points for recombinant spider silks for human use are toxicity and immunogenicity. To assess this issue, two bioengineered spider silk proteins composed of different numbers of repetitive motifs of the consensus repeats from spidroin-1 from Nephila clavipes (15X and 6X) were cloned and expressed in Escherichia coli. The proteins were free of tag sequence and were purified using two methods based on (1) thermal and (2) organic acid resistance of the spider silks. The soluble spider silk proteins were not cytotoxic and did not activate macrophages over a wide range of concentrations, except when present at the highest concentration. Films made of the different silk variants supported the growth of the cells. Based on these data, and as the biodegradation rate of silk is very slow, the bioengineered spider silks are presumed safe biomaterials for biomedical applications.
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Affiliation(s)
- Hanna Dams-Kozlowska
- Department of Cancer Diagnostics and Immunology, Greater Poland Cancer Centre, Poznan 61-866, Poland.
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21
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Numata K, Yamazaki S, Naga N. Biocompatible and Biodegradable Dual-Drug Release System Based on Silk Hydrogel Containing Silk Nanoparticles. Biomacromolecules 2012; 13:1383-9. [DOI: 10.1021/bm300089a] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Keiji Numata
- Enzyme Research Team, RIKEN Biomass Engineering Program, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama
351-0198, Japan
| | - Shoya Yamazaki
- Enzyme Research Team, RIKEN Biomass Engineering Program, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama
351-0198, Japan
- Department of Applied
Chemistry, Materials Science Course, College of Engineering, Shibaura Institute of Technology, 3-7-5 Toyosu, Koto-ku,
Tokyo 135-8548, Japan
| | - Naofumi Naga
- Department of Applied
Chemistry, Materials Science Course, College of Engineering, Shibaura Institute of Technology, 3-7-5 Toyosu, Koto-ku,
Tokyo 135-8548, Japan
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22
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Numata K, Katashima T, Sakai T. State of Water, Molecular Structure, and Cytotoxicity of Silk Hydrogels. Biomacromolecules 2011; 12:2137-44. [DOI: 10.1021/bm200221u] [Citation(s) in RCA: 102] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Keiji Numata
- Enzyme Research Team, RIKEN Biomass Engineering Program, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
| | - Takuya Katashima
- Department of Bioengineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Takamasa Sakai
- Department of Bioengineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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23
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Dual biosyntheses of poly[(R)-3-hydroxybutyric acid] and silk protein for the fabrication of biofunctional bioplastic. Polym J 2011. [DOI: 10.1038/pj.2011.27] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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